BAC Information

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BAC

Clone NameB6Ng01-163E21
Chromosome11 (Build37)
Map Location 35,197,397 - 35,285,314
singlet/doubletdoublet
Overlap geneSlit3
Upstream geneDock2, EG574403, Dock2, Ccdc99, LOC100038976, LOC100039006
Downstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E21.bB6Ng01-163E21.g
ACCDH955927DH955928
length1,1051,130
definitionDH955927|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E21, 5' end.DH955928|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,197,397 - 35,198,504)(35,284,163 - 35,285,314)
sequence
gaattcctcaaagttacccggctgtgcattttatgtgacttctggatgag
gacatcagaaacttcttcagcctgaccctacttacttagaacctgtgcat
gctgagatactgtttgggggagctcaattattggctgagtctgggggagc
tcagaacccagcgcctctgggcaggaacacacagccatcaacacccaact
gcacacctgctggatgcagggtcaccagagaacatgcccgaaacctgcct
ttgcaggagtattttatgtcctgaccatgagagcagccacccaggggaca
gcaggattatcacaaggggacagaccagatgtgctcttgttttgttactc
taatacacagaaaggccacaggcggcccaggacatcagcttgtagaagct
gcctgctctaatacacagaaaggccatcagcttgtagaagctgcctgctc
ttttactcagcagttccttttgcttttgctttgtttttgtagggatgggg
agccctcatcctcagccaggttttgccttttgccagcaaaggcgcctggc
tgaggttatctctcaagctcctgcaaaagacagccacctaccttctcctt
gcttcccttccctacctgaggccctttgaacagttttcacaagcagggga
gcccttggaagcaagcttgcctagctgccttcaaatgcatgtgcctgccg
agccaaggttgaaactctgttgcagattcagtcaaatgaaacccagctgc
tactatctgtagttacggttgttgtttgtttactttctcttggtttattt
tttcctttgttaatcacaccatttacaccccaccaatacttcattggttt
cttgactcatcaaatttatagtaaatctctactccaggtccctagatcca
gactctggtcagtttgggctcagaaactttgctaagtcagggagagaagt
atcaggaggagagagaggggactggcaggcagacggagagagggatttac
aaaatataacatgagccatactaccagaaggtgttaccttcctggagtcc
tttagcgttgagtatcgtgttcgagatccctgccagttctatgaatgtgt
aataa
gaattctctctatcttaaatgcaggacctacatttattggacaaacattt
gaggatcctttggtacctgtatatgtacaaatatctcactgtctgaactt
gtgaactgtatagatgggaaaagcctggctacatgcattgtgaggtttta
agcgtcagagccatcagatgtgtgattatacagatgggcacacgaactcc
tggaaaataagtccaagttgattcagcctggagctctatggctaggccca
ggactgtgaatttaaacatggaagacgtatgccttcactgagactctcct
ggggggaaatggattgcttcaacaaattattaggagagatggagctgaac
cctaaaaccttctatgaatcagatctttgggcagctgtctatactaatat
tccctcatcataatcttcatatctgaccaatcattgaagatcacctattt
tgcttccaaatgcctgcctatccatccacccccttcttctcaccaagtca
ccatgccctcctttgagctgctcaaatctctttccttcccgctggcttct
attctgaagtcaggggtcttttataaacacaaatctgattagcctgcctt
cctaatatctcctaagtgcgtcccagtgttcttagctggatgttgactaa
ttatgatctgtgaacagagcccagcctccaccggaagccccgtttacagg
aactgggctgtggccattattgacgcaccatctctggctgcttcttctct
gcgacagacagcagaaagacacttgcaccaacaacactgtctggacagca
aagctaaaagcacttgtcatctgtcatgtcaccaaagaagtttgccaact
gcagtactagacaaaagtccttatggtggtgacacatgagatctcattgt
gtatgaccactgcctgttctctgtccccaccccacccccattctgcaccc
cctctgttttctactgtcattttactagacaactgtggctgttcccaggg
actcaggacaggactggaggttatgtgtacgtgacttggtgagccccgaa
tccgtggtcataggtgctgacttttgggactcaagcatctatctttccta
ggctaggctgtggctttggttctactattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_35197397_35198504
seq2: B6Ng01-163E21.b_45_1149

seq1  GAATTCCTCAAAGTTACCCGGCTGTGCATTTTATGTGACTTCTGGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAAGTTACCCGGCTGTGCATTTTATGTGACTTCTGGATGAG  50

seq1  GACATCAGAAACTTCTTCAGCCTGACCCTACTTACTTAGAACCTGTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGAAACTTCTTCAGCCTGACCCTACTTACTTAGAACCTGTGCAT  100

seq1  GCTGAGATACTGTTTGGGGGAGCTCAATTATTGGCTGAGTCTGGGGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATACTGTTTGGGGGAGCTCAATTATTGGCTGAGTCTGGGGGAGC  150

seq1  TCAGAACCCAGCGCCTCTGGGCAGGAACACACAGCCATCAACACCCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCCAGCGCCTCTGGGCAGGAACACACAGCCATCAACACCCAACT  200

seq1  GCACACCTGCTGGATGCAGGGTCACCAGAGAACATGCCCGAAACCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTGCTGGATGCAGGGTCACCAGAGAACATGCCCGAAACCTGCCT  250

seq1  TTGCAGGAGTATTTTATGTCCTGACCATGAGAGCAGCCACCCAGGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGAGTATTTTATGTCCTGACCATGAGAGCAGCCACCCAGGGGACA  300

seq1  GCAGGATTATCACAAGGGGACAGACCAGATGTGCTCTTGTTTTGTTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTATCACAAGGGGACAGACCAGATGTGCTCTTGTTTTGTTACTC  350

seq1  TAATACACAGAAAGGCCACAGGCGGCCCAGGACATCAGCTTGTAGAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACACAGAAAGGCCACAGGCGGCCCAGGACATCAGCTTGTAGAAGCT  400

seq1  GCCTGCTCTAATACACAGAAAGGCCATCAGCTTGTAGAAGCTGCCTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCTAATACACAGAAAGGCCATCAGCTTGTAGAAGCTGCCTGCTC  450

seq1  TTTTACTCAGCAGTTCCTTTTGCTTTTGCTTTGTTTTTGTAGGGATGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCAGCAGTTCCTTTTGCTTTTGCTTTGTTTTTGTAGGGATGGGG  500

seq1  AGCCCTCATCCTCAGCCAGGTTTTGCCTTTTGCCAGCAAAGGCGCCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCATCCTCAGCCAGGTTTTGCCTTTTGCCAGCAAAGGCGCCTGGC  550

seq1  TGAGGTTATCTCTCAAGCTCCTGCAAAAGACAGCCACCTACCTTCTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTATCTCTCAAGCTCCTGCAAAAGACAGCCACCTACCTTCTCCTT  600

seq1  GCTTCCCTTCCCTACCTGAGGCCCTTTGAACAGTTTTCACAAGCAGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTTCCCTACCTGAGGCCCTTTGAACAGTTTTCACAAGCAGGGGA  650

seq1  GCCCTTGGAAGCAAGCTTGCCTAGCTGCCTTCAAATGCATGTGCCTGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGAAGCAAGCTTGCCTAGCTGCCTTCAAATGCATGTGCCTGCCG  700

seq1  AGCCAAGGTTGAAACTCTGTTGCAGATTCAGTCAAATGAAACCCAGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGTTGAAACTCTGTTGCAGATTCAGTCAAATGAAACCCAGCTGC  750

seq1  TACTATCTGTAGTTACGGTTGTTGTTTGTTTACTTTCTCTTGGTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTGTAGTTACGGTTGTTGTTTGTTTACTTTCTCTTGGTTTATTT  800

seq1  TTTCCTTTGTTAATCACACCATTTACACCCCACCAATACTTCATTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGTTAATCACACCATTTACACCCCACCAATACTTCATTGGTTT  850

seq1  CTTGACTCATCAAATTTATAGTAAATCTCTACTCCAGGTCCCTAGATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTCATCAAATTTATAGTAAATCTCTACTCCAGGTCCCTAGATCCA  900

seq1  GACTCTGGTCAGTTTGGGCTCAGAAACTTTGCTAAGTCAAGGGAGAGAAG  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACTCTGGTCAGTTTGGGCTCAGAAACTTTGCTAAGTC-AGGGAGAGAAG  949

seq1  TATCAGGAGGAGAGAGAGGGGACTGGCAGGCAGAAGGGAGAGAGGGAATT  1000
      ||||||||||||||||||||||||||||||||| | |||||||||| |||
seq2  TATCAGGAGGAGAGAGAGGGGACTGGCAGGCAG-ACGGAGAGAGGG-ATT  997

seq1  TACAAAATATAACATGAGCCATACTACCAGAA-GTGTTACCTTCCT-GAG  1048
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TACAAAATATAACATGAGCCATACTACCAGAAGGTGTTACCTTCCTGGAG  1047

seq1  TCCTTTAGTGTTTGAGTATCGTGTTCGAAGGATCCCTGCCAG-TCTATGA  1097
      |||||||| | |||||||||||||||||  |||||||||||| |||||||
seq2  TCCTTTAGCG-TTGAGTATCGTGTTCGA--GATCCCTGCCAGTTCTATGA  1094

seq1  ATGTGTCATAA  1108
      |||||| ||||
seq2  ATGTGTAATAA  1105

seq1: chr11_35284163_35285314
seq2: B6Ng01-163E21.g_67_1196 (reverse)

seq1  AAATAGTAGAACACAAAACCCACAGCCCTAGCGATGGAAGGGCTAGGATT  50
      ||||||||||  || ||| |||||| ||||||   ||||  | || ||| 
seq2  AAATAGTAGA--ACCAAAGCCACAG-CCTAGCCTAGGAA-AGATA-GAT-  44

seq1  GCCTTGGGTCCCAAAAGTCAGCACCCTATGAACAACGGAATTGGGGGGCT  100
        |||| |||||||||||||||| |||||| || |||||  |  ||||||
seq2  -GCTTGAGTCCCAAAAGTCAGCA-CCTATG-ACCACGGA--TTCGGGGCT  89

seq1  TCACAGGTCACGGTAACACATAACACTCAGTCCTGTCCCTGAGGTCCCTG  150
         || ||||||   |||||||||   ||||||||| ||||| |||||||
seq2  CACCAAGTCACG--TACACATAACCTCCAGTCCTGT-CCTGA-GTCCCTG  135

seq1  GGAACAGCCACAAGTTTGTCTAGTAAAATGACAGTGAGAAAAACAAGAGG  200
      ||||||||||||   |||||||||||||||||||| ||||||   ||| |
seq2  GGAACAGCCACA--GTTGTCTAGTAAAATGACAGT-AGAAAA--CAGA-G  179

seq1  GGGGTGCAGAATGGGGGTGGGGTGGGGACAGAGAAACAGGCAGTGGTCAT  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGTGCAGAATGGGGGTGGGGTGGGGACAGAG-AACAGGCAGTGGTCAT  228

seq1  ACACAATGAGATCTCATGTGTCACCACCATAAGGACTTTTGTCTAGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGAGATCTCATGTGTCACCACCATAAGGACTTTTGTCTAGTACT  278

seq1  GCAGTTGGCAAACTTCTTTGGTGACATGACAGATGACAAGTGCTTTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGCAAACTTCTTTGGTGACATGACAGATGACAAGTGCTTTTAGC  328

seq1  TTTGCTGTCCAGACAGTGTTGTTGGTGCAAGTGTCTTTCTGCTGTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTCCAGACAGTGTTGTTGGTGCAAGTGTCTTTCTGCTGTCTGTC  378

seq1  GCAGAGAAGAAGCAGCCAGAGATGGTGCGTCAATAATGGCCACAGCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAGAAGCAGCCAGAGATGGTGCGTCAATAATGGCCACAGCCCAG  428

seq1  TTCCTGTAAACGGGGCTTCCGGTGGAGGCTGGGCTCTGTTCACAGATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTAAACGGGGCTTCCGGTGGAGGCTGGGCTCTGTTCACAGATCAT  478

seq1  AATTAGTCAACATCCAGCTAAGAACACTGGGACGCACTTAGGAGATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCAACATCCAGCTAAGAACACTGGGACGCACTTAGGAGATATTA  528

seq1  GGAAGGCAGGCTAATCAGATTTGTGTTTATAAAAGACCCCTGACTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGGCTAATCAGATTTGTGTTTATAAAAGACCCCTGACTTCAGA  578

seq1  ATAGAAGCCAGCGGGAAGGAAAGAGATTTGAGCAGCTCAAAGGAGGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCCAGCGGGAAGGAAAGAGATTTGAGCAGCTCAAAGGAGGGCAT  628

seq1  GGTGACTTGGTGAGAAGAAGGGGGTGGATGGATAGGCAGGCATTTGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTGGTGAGAAGAAGGGGGTGGATGGATAGGCAGGCATTTGGAAG  678

seq1  CAAAATAGGTGATCTTCAATGATTGGTCAGATATGAAGATTATGATGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGGTGATCTTCAATGATTGGTCAGATATGAAGATTATGATGAGG  728

seq1  GAATATTAGTATAGACAGCTGCCCAAAGATCTGATTCATAGAAGGTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAGTATAGACAGCTGCCCAAAGATCTGATTCATAGAAGGTTTTA  778

seq1  GGGTTCAGCTCCATCTCTCCTAATAATTTGTTGAAGCAATCCATTTCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGCTCCATCTCTCCTAATAATTTGTTGAAGCAATCCATTTCCCC  828

seq1  CCAGGAGAGTCTCAGTGAAGGCATACGTCTTCCATGTTTAAATTCACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAGTCTCAGTGAAGGCATACGTCTTCCATGTTTAAATTCACAGT  878

seq1  CCTGGGCCTAGCCATAGAGCTCCAGGCTGAATCAACTTGGACTTATTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCTAGCCATAGAGCTCCAGGCTGAATCAACTTGGACTTATTTTC  928

seq1  CAGGAGTTCGTGTGCCCATCTGTATAATCACACATCTGATGGCTCTGACG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTCGTGTGCCCATCTGTATAATCACACATCTGATGGCTCTGACG  978

seq1  CTTAAAACCTCACAATGCATGTAGCCAGGCTTTTCCCATCTATACAGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACCTCACAATGCATGTAGCCAGGCTTTTCCCATCTATACAGTTC  1028

seq1  ACAAGTTCAGACAGTGAGATATTTGTACATATACAGGTACCAAAGGATCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTCAGACAGTGAGATATTTGTACATATACAGGTACCAAAGGATCC  1078

seq1  TCAAATGTTTGTCCAATAAATGTAGGTCCTGCATTTAAGATAGAGAGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTTTGTCCAATAAATGTAGGTCCTGCATTTAAGATAGAGAGAAT  1128

seq1  TC  1152
      ||
seq2  TC  1130