BAC Information

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BAC

Clone NameB6Ng01-163F09
Chromosome11 (Build37)X (Build37)
Map Location 106,997,794 - 106,997,939132,233,706 - 132,234,654
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMap3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899
Downstream geneNol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163F09.bB6Ng01-163F09.g
ACCDH955951DH955952
length9841,068
definitionDH955951|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F09, 5' end.DH955952|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,997,794 - 106,997,939)(132,233,706 - 132,234,654)
sequence
gaattctacaaggttttttttttttaaaaaaaactacaaccaatagttct
taaattattcaaaaattaggtacagaagacatagttccaagttccctcta
tgaagccagtattagcctaatgctaaattcagataaagaaacaaaaacaa
cagcaacaacaacaacattaccagccaatatccttgataaacgtagatac
aaaaatcctcaataaaatactggcaaactgaatagaggaatatatcaaaa
agattatccaccacaatcaagttggctttatctcagagatgcaaggatag
ttcaacatacataagtcattaaataaaataaaacatataaatggactttt
acaaaattgaatgatcatctcaagagacaccaaaaagccttttgacaaac
tctaacataccttcatgataaaatactaggaacagtcaattgcaggaaac
ataccttaacaaaaaggctaaatatgacaaacccaaagtcaacattaccc
taaatgaagaaaaactcaaagcaatcacattaaaatcggaaatgagacag
gactgcccattatcccccactccttttgaatatagtgcatgaggcagcat
tagctcgagccatatggcaagagaaggaaataaaagtcatacaaatagaa
aaggtagttgaattatccctacttgcacaagatatgttctgatacatgat
atctcaaaaattggccgggcatggtggcacacgcctttaatcccaacact
cgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctac
agagtgagttccaggacagccagggctacacagaaaaaccctgtctcgaa
acaacaacaacaaaaaaaattgtaccataaaatattttagaaatgatcaa
cactttcagaaaagtggcaatttacaaagatcaactttaaaaaatcagta
gcttttctaggtttttctccattaatttgtttat
gaattctttctgttaccttaaacatattttctaaaacatctttgtcagaa
tcatccaacaaaatgccttgctttggggattacagttaattaatttgaat
gaatctcagaatagaccttgaactttagacttttaacattgttgctactg
ctatagactatgaggactttgaaagttggattaaatgcattttgcattat
gctatgtttaagtatggcccccatagactcatgtttttgaacaagtctat
ggggaccagggagtggaatgtgatagtttgtatatccttggaccagggag
tggcaccatctagaggtgtggccttgttggaatatgtgtgacctggttgg
aatgggtgtgtcactgtgggtgtgggtataagagcctcaccctagttgtc
tggaagtcagtcttccactagcagcctttggatgaagacatagaactctc
agctcctcctgcaccatgcctgcctggatattgccatgctcccaccttga
tgataatggactgaacctctaaacctgtaagccagccccaattaaatgtt
gttttttataagacttgccttggtcatggtgtctgttcacagcagtaaaa
ccctaactaagatatatatatatataattctgttgttctattttttgtgg
ctatgtgctttcaccatgacaaccattgtaattgctgtacagctttctac
tacagctgacaccaaacctttccaatcttaggggatgaccctattctgta
aagcccacttatttagcattctctaacaaatggagagtgcaagccatgcc
tctttaaaatgccttagatctatcatttttactggatgccagacagctca
ttatagggtgcaatgccatcacactagcaggcatatgctgcacaaagact
gggaaaggatgaggtacctctgtaggaccaaacaatcctctcatggtgca
ctcagctgaattactatcccattttaccagcaacttttcctgctttgtag
gcccttagcttcacagaggttatcccgaacacagggcagtgactatgtta
tggaaaaaaagcaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106997794_106997939
seq2: B6Ng01-163F09.b_757_912

seq1  GCCGGGCAAGGTAGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGG  50
      |||||||| ||| ||||||||||||||||||| |||||||||||||||||
seq2  GCCGGGCATGGTGGCACACGCCTTTAATCCCAACACTCGGGAGGCAGAGG  50

seq1  CAGGCGGATTTCTGAGTTTGAGGCCAGCCTAGTCTACAAAGTGAGCTCCA  100
      |||||||||||||||||| ||||||||||| ||||||| |||||| ||||
seq2  CAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  100

seq1  GGACAGCCAGGGCTATACAAAGAAACCCTGTCTTGAAA----------AA  140
      ||||||||||||||| ||| | ||||||||||| ||||          ||
seq2  GGACAGCCAGGGCTACACAGAAAAACCCTGTCTCGAAACAACAACAACAA  150

seq1  AAAAAA  146
      ||||||
seq2  AAAAAA  156

seq1: chrX_132233706_132234654
seq2: B6Ng01-163F09.g_184_1136

seq1  CCTTGAACTTTAGACTTTTAACATTGTTGCTACTGCTATAGACTATGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTTAGACTTTTAACATTGTTGCTACTGCTATAGACTATGAGG  50

seq1  ACTTTGAAAGTTGGATTAAATGCATTTTGCATTATGCTATGTTTAAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAAGTTGGATTAAATGCATTTTGCATTATGCTATGTTTAAGTAT  100

seq1  GGCCCCCATAGACTCATGTTTTTGAACAAGTCTATGGGGACCAGGGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCATAGACTCATGTTTTTGAACAAGTCTATGGGGACCAGGGAGTG  150

seq1  GAATGTGATAGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGATAGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTAGAG  200

seq1  GTGTGGCCTTGTTGGAATATGTGTGACCTGGTTGGAATGGGTGTGTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCCTTGTTGGAATATGTGTGACCTGGTTGGAATGGGTGTGTCACT  250

seq1  GTGGGTGTGGGTATAAGAGCCTCACCCTAGTTGTCTGGAAGTCAGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTGGGTATAAGAGCCTCACCCTAGTTGTCTGGAAGTCAGTCTTC  300

seq1  CACTAGCAGCCTTTGGATGAAGACATAGAACTCTCAGCTCCTCCTGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCAGCCTTTGGATGAAGACATAGAACTCTCAGCTCCTCCTGCACC  350

seq1  ATGCCTGCCTGGATATTGCCATGCTCCCACCTTGATGATAATGGACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCTGGATATTGCCATGCTCCCACCTTGATGATAATGGACTGAA  400

seq1  CCTCTAAACCTGTAAGCCAGCCCCAATTAAATGTTGTTTTTTATAAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAACCTGTAAGCCAGCCCCAATTAAATGTTGTTTTTTATAAGACT  450

seq1  TGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGATAT  500

seq1  ATATATATATAATTCTGTTGTTCTA-TTTTTGTGGCTATGTGCTTTCACC  549
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATATATATATAATTCTGTTGTTCTATTTTTTGTGGCTATGTGCTTTCACC  550

seq1  ATGACAACCATTGTAATTGCTGTACAGC-TTCTACTACAGCTGACACCAA  598
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGACAACCATTGTAATTGCTGTACAGCTTTCTACTACAGCTGACACCAA  600

seq1  ACCTTTCCAATCTTAGGGGATGACCCTATTCTGTAAAGCCCACTTATTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCAATCTTAGGGGATGACCCTATTCTGTAAAGCCCACTTATTTA  650

seq1  GCATTTCTCTAACAAATGGAGAGTGCAAGCCATGCCTCTTTAAAATGCCT  698
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-TTCTCTAACAAATGGAGAGTGCAAGCCATGCCTCTTTAAAATGCCT  699

seq1  TAGATCTATCATTTTTACTGGATGCCAGACAGCTCATTATAGGGTGCAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTATCATTTTTACTGGATGCCAGACAGCTCATTATAGGGTGCAAT  749

seq1  GCCATCACACTAGCAGGCATATGCTGCACAAAGACTGGG-AAGGATGAAG  797
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  GCCATCACACTAGCAGGCATATGCTGCACAAAGACTGGGAAAGGATG-AG  798

seq1  GTACCTCTGTAGGACCAAACAAATCCTCTCATGGTGCACTCAGCTGAA-T  846
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  GTACCTCTGTAGGACCAAAC-AATCCTCTCATGGTGCACTCAGCTGAATT  847

seq1  ACTATCCCATTTTACCAGCAACTTTTCCTGCTTTGTAGGCCCCTAGCTTC  896
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTATCCCATTTTACCAGCAACTTTTCCTGCTTTGTAGGCCCTTAGCTTC  897

seq1  ACAGAGGTTATCCAG-ACACATGGCAGTGACAGTG-TATGG-AACAGAGC  943
      ||||||||||||| | ||||| |||||||||  || ||||| || | |||
seq2  ACAGAGGTTATCCCGAACACAGGGCAGTGACTATGTTATGGAAAAAAAGC  947

seq1  AAGGCA  949
      ||||||
seq2  AAGGCA  953