BAC Information

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BAC

Clone NameB6Ng01-163O16
Chromosome11 (Build37)
Map Location 86,690,535 - 86,831,011
singlet/doubletdoublet
Overlap geneYpel2
Upstream geneTbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
Downstream geneGdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163O16.bB6Ng01-163O16.g
ACCDH956382DH956383
length7121,020
definitionDH956382|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O16, 5' end.DH956383|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,690,535 - 86,691,247)(86,830,410 - 86,831,011)
sequence
gaattctattctgtcagtcatctagggctggctgctaggtgagtcctagc
cttttaaaaattgagtcccctcagctgggcgtggtggtgcaggcctttaa
tctcagcccttggaaggcagaaataggcagatctttgtgagttggaggcc
agcctgatctacagaatgagttccaggacaaagcaagggctgttacacac
agaagttgtctccaaaaacaaaaaccaagcaaataaacaaaagtgtgggg
ggggggatctctccatcatggaaagggggctggagacagaaagattgatg
tgagattgagatcctcctgcctccgtgactggggagccaggatgacaagc
accactaggcctcagtgcagtgcagggctcaacctaggacttcatccgtg
ctaggcaaacacttaaccgactgagctacacctccaactctaaggttact
tttaaaaaatcaaaatgtcaggcagatattccaaaggtcctgaattcaaa
tcccagcaaccaaatggtggctcataaccacccgtaatgagatctgacgc
cctcttctggtgtgtctcaaggctagcctggtctaaaagtaagttccaga
ctagccatatctatgccgtgagactgttaaaaaaaaaaaaaaaagtcaaa
atgccaaggggtctgcactctcccctaaacatgcctgtgttctcctttta
attttaggtaat
gaattctcattgtgagctactaccctaaaatgacaaagggcagctagagg
gatggcttagtcacagacagctctttttgctcttacagaggatctaggtt
ctgttcccaggaacacatgggcaagcacaacaggccaaatgcttatatat
acaagataaaataatctaaaaaaaaaaattaggaatctaaggccctcttc
tggtgtgtctgaagacagctacagtgtattcatataaatacattttaaaa
aagaaggggggggggagagatggctcagtggttaggaacactgactattc
ttccagagttcttccagagatcctgagttcaattctcagcaaccacatgg
tggctcacaaccatctgtaaagggatctgatgccctcttctggtgtgtct
gaagacagccacaatgtactcacatacataaaataaataaataattcttt
aaaaaatgttttaaacaaactaacttcttagctagccagggtcttgctaa
attgcataggttgggctcgaacttatgaaccctttgcctcaggcatccaa
gtggcttgatttacaggcctgagccaccagactcagtaacttggatcatt
catttctctcagtgccacagcctagacatcagttcaaaccatttccttcc
tgtatcactgcagaatctctcacagtttctttccctctttagtctgtgct
taaagaagctgcccaagaaatccagctaaagatatgtcaggggctagaga
ggtggctcagtcaagagttctttgtcccatcttgcagaggatttggattt
agtccatttctcagcacttacatggcagctcacaacttctgcatgcatca
gtgctagtgtggtggagagatcataaagtacaggcaaaacactcacacac
aaaagaaataaatcatatacatacacacatgccatatatattgatatatg
atatgtatgtacatatgatatattataatatgtgatatgttatatatcat
tcctatatacgtaatatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86690535_86691247
seq2: B6Ng01-163O16.b_47_758

seq1  GAATTCTATTCTGTCAGTCATCTAGGGCTGGCTGCTAGGTGAGTCCTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCTGTCAGTCATCTAGGGCTGGCTGCTAGGTGAGTCCTAGC  50

seq1  CTTTTAAAAATTGAGTCCCCTCAGCTGGGCGTGGTGGTGCAGGCCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAATTGAGTCCCCTCAGCTGGGCGTGGTGGTGCAGGCCTTTAA  100

seq1  TCTCAGCCCTTGGAAGGCAGAAATAGGCAGATCTTTGTGAGTTGGAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCCTTGGAAGGCAGAAATAGGCAGATCTTTGTGAGTTGGAGGCC  150

seq1  AGCCTGATCTACAGAATGAGTTCCAGGACAAAGCAAGGGCTGTTACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATCTACAGAATGAGTTCCAGGACAAAGCAAGGGCTGTTACACAC  200

seq1  AGAAGTTGTCTCCAAAAACAAAAACCAAGCAAATAAACAAAAGTGTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGTCTCCAAAAACAAAAACCAAGCAAATAAACAAAAGTGTGGGG  250

seq1  GGGGGGATCTCTCCATCATGGAAAGGGGGCTGGAGACAGAAAGATTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATCTCTCCATCATGGAAAGGGGGCTGGAGACAGAAAGATTGATG  300

seq1  TGAGATTGAGATCCTCCTGCCTCCGTGACTGGGGAGCCAGGATGACAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGAGATCCTCCTGCCTCCGTGACTGGGGAGCCAGGATGACAAGC  350

seq1  ACCACTAGGCCTCAGTGCAGTGCAGGGCTCAACCTAGGACTTCATCCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTAGGCCTCAGTGCAGTGCAGGGCTCAACCTAGGACTTCATCCGTG  400

seq1  CTAGGCAAACACTTAACCGACTGAGCTACACCTCCAACTCTAAGGTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAAACACTTAACCGACTGAGCTACACCTCCAACTCTAAGGTTACT  450

seq1  TTTAAAAAATCAAAATGTCAGGCAGATATTCCAAAGGTCCTGAATTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATCAAAATGTCAGGCAGATATTCCAAAGGTCCTGAATTCAAA  500

seq1  TCCCAGCAACCAAATGGTGGCTCATAACCACCCGTAATGAGATCTGACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAACCAAATGGTGGCTCATAACCACCCGTAATGAGATCTGACGC  550

seq1  CCTCTTCTGGTGTGTCTCAAGGCTAGCCTGGTCTAAAAGTAAGTTCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGTGTGTCTCAAGGCTAGCCTGGTCTAAAAGTAAGTTCCAGA  600

seq1  CTAGCCATATCTATGCCGTGAGACTGTTAAAAAAAAAAAAAAAAGTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCATATCTATGCCGTGAGACTGTTAAAAAAAAAAAAAAAAGTCAAA  650

seq1  ATGCCAAGGGGTCTGCACTCTCCCCTAAGCATGCCTGTGTTCTCTCTTTT  700
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  ATGCCAAGGGGTCTGCACTCTCCCCTAAACATGCCTGTGTTCTC-CTTTT  699

seq1  ATTTTTAGGTAAT  713
      | |||||||||||
seq2  AATTTTAGGTAAT  712

seq1: chr11_86830410_86831011
seq2: B6Ng01-163O16.g_489_1089 (reverse)

seq1  CACATATATACATATATATGAATGATATATAACATATCACATA-TATAAT  49
      ||||||| ||| |||||| |||||||||||||||||||||||| ||||||
seq2  CACATAT-TACGTATATAGGAATGATATATAACATATCACATATTATAAT  49

seq1  ATATCATATGTACATACATATCATATATC-ATATATATGGCATGTGTGTA  98
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATATCATATGTACATACATATCATATATCAATATATATGGCATGTGTGTA  99

seq1  TGTATATGATTTATTTCTTTTGTGTGTGAGTGTTTTGCCTGTACTTTATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGATTTATTTCTTTTGTGTGTGAGTGTTTTGCCTGTACTTTATG  149

seq1  AATCTCTCCACCACACTAGCACCTGATGCATGCAGAAGTTGTGAGCTGCC  198
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -ATCTCTCCACCACACTAGCA-CTGATGCATGCAGAAGTTGTGAGCTGCC  197

seq1  ATGTAAGTGCTGAGAAATGGACTAAATCCTAAATCCTCTGCAAGATGGGA  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGTAAGTGCTGAGAAATGGACTAAATCC-AAATCCTCTGCAAGATGGGA  246

seq1  C-AAGAACTCTTGACTGAGCCACCTCTCTAGCCCCTGACATATCTTTAGC  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACTCTTGACTGAGCCACCTCTCTAGCCCCTGACATATCTTTAGC  296

seq1  TGGATTTCTTGGGCAGCTTCTTTAAGCACAGACTAAAGAGGGAAAGAAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTTGGGCAGCTTCTTTAAGCACAGACTAAAGAGGGAAAGAAAC  346

seq1  TGTGAGAGATTCTGCAGTGATACAGGAAGGAAATGGTTTGAACTGATGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGATTCTGCAGTGATACAGGAAGGAAATGGTTTGAACTGATGTC  396

seq1  TAGGCTGTGGCACTGAGAGAAATGAATGATCCAAGTTACTGAGTCTGGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTGGCACTGAGAGAAATGAATGATCCAAGTTACTGAGTCTGGTG  446

seq1  GCTCAGGCCTGTAAATCAAGCCACTTGGATGCCTGAGGCAAAGGGTTCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGCCTGTAAATCAAGCCACTTGGATGCCTGAGGCAAAGGGTTCAT  496

seq1  AAGTTCGAGCCCAACCTATGCAATTTAGCAAGACCCTGGCTAGCTAAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCGAGCCCAACCTATGCAATTTAGCAAGACCCTGGCTAGCTAAGAA  546

seq1  GTTAGTTTGTTTAAAACATTTTTTAAAGAATTATTTATTTATTTTATGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTGTTTAAAACATTTTTTAAAGAATTATTTATTTATTTTATGTA  596

seq1  TGTGA  602
      |||||
seq2  TGTGA  601