BAC Information

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BAC

Clone NameB6Ng01-164D13
ChromosomeY (Build37)11 (Build37)
Map Location 1,870,346 - 1,870,43283,311,047 - 83,311,866
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164D13.bB6Ng01-164D13.g
ACCDH956603DH956604
length500826
definitionDH956603|Mus musculus domesticus DNA, BAC clone: B6Ng01-164D13, 5' end.DH956604|Mus musculus domesticus DNA, BAC clone: B6Ng01-164D13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,432)(83,311,047 - 83,311,866)
sequence
gaattcctctgactcaacaagaaaaagaagacacaattttaaaatggcaa
aggagtgtgaacgatgcttctccaaagaagatatttatttacatggttaa
taatcacataatcacatgggattttgactttgcctatgatcctagcactc
tgggagacagaaggaggccaagttcaaggccagcctgggcaaatttagtg
agactttatctcaaaataaaaagtaatatggatcttgaagtggccacctc
ctgtagccaggtgggacttccagagaagggagggacacaccaacccaccc
acagaacctttgaccccaaatttgtcctgcttactatgccagggcctagc
aaacacagaagtggatgctcacagtcagctattgaatggaccacagggcc
cccaatggaggagctagagaaagcacccaaggaactaaagggaactgcaa
ccctataggtggaacaacaatatgaactaaccagtaccccggagctcttg

gaattcactgggttttgacaatagggttttttttccttttataaaggtag
ctgacgtggtgttttaaattattaggggtttccaatcagccttacaacag
tgcttgacagaagtgatactagaataataacaaaagtgggtgctgtcttg
gacaaggctaaagaaatgttggcattcgtcttgatttcctaaactttaaa
taataaacatttatgtagttatttttaaacctgtgatggttgactttcaa
ggatattaagttctgactttacatgctttggttattaccgtttccttttt
aatttcaaataagttgtcttagacagcctttccttttcttctcccatagg
tcacagggattatggacccagaccagatgctggtaagattcttgatagtt
tggtttcctacctctggaagaggaattaatgtgtttggagggaggtttaa
tttaatttaatttaatttaatttaatttaatggtgctgccagatctgggg
aatttgacttaaaataataatttagtgatctgattagaaagcttgctgga
gaaactgctgtgtttgtgctttgttgcttgaagaaacatttcaaatttgt
tctgctaataaagcattaatgcagtctaaagagaaattttgttatcttag
caatgtagaggtaaaaagctgtttaaatctttcattgaattagttttaat
gggcataagaaagttgttcatgtacaagggaattgtctttctcccgggta
gaagttacttatttttatgtagtgtttcattttttagatgaattaaaggc
tatagacttgcttttggagccttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870432
seq2: B6Ng01-164D13.b_462_548

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||| ||||||||| ||||||||| |||||||||||||||||||
seq2  CTAGAGAAAGCACCCAAGGAACTAAAGGGAACTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTG  87
      |||||| ||||||||||||| |||||| |||||||||
seq2  ACAACAATATGAACTAACCAGTACCCCGGAGCTCTTG  87

seq1: chr11_83311047_83311866
seq2: B6Ng01-164D13.g_69_894

seq1  GAATTCACTGGGTTTTGACAATAGGGTTTTTTTTCCTTTTATAAAGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGTTTTGACAATAGGGTTTTTTTTCCTTTTATAAAGGTAG  50

seq1  CTGACGTGGTGTTTTAAATTATTAGGGGTTTCCAATCAGCCTTACAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGTGGTGTTTTAAATTATTAGGGGTTTCCAATCAGCCTTACAACAG  100

seq1  TGCTTGACAGAAGTGATACTAGAATAATAACAAAAGTGGGTGCTGTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGACAGAAGTGATACTAGAATAATAACAAAAGTGGGTGCTGTCTTG  150

seq1  GACAAGGCTAAAGAAATGTTGGCATTCGTCTTGATTTCCTAAACTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCTAAAGAAATGTTGGCATTCGTCTTGATTTCCTAAACTTTAAA  200

seq1  TAATAAACATTTATGTAGTTATTTTTAAACCTGTGATGGTTGACTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACATTTATGTAGTTATTTTTAAACCTGTGATGGTTGACTTTCAA  250

seq1  GGATATTAAGTTCTGACTTTACATGCTTTGGTTATTACCGTTTCCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTAAGTTCTGACTTTACATGCTTTGGTTATTACCGTTTCCTTTTT  300

seq1  AATTTCAAATAAGTTGTCTTAGACAGCCTTTCCTTTTCTTCTCCCATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAATAAGTTGTCTTAGACAGCCTTTCCTTTTCTTCTCCCATAGG  350

seq1  TCACAGGGATTATGGACCCAGACCAGATGCTGGTAAGATTCTTGATAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGATTATGGACCCAGACCAGATGCTGGTAAGATTCTTGATAGTT  400

seq1  TGGTTTCCTACCTCTGGAAGAGGAATTAATGTGTTTGGAGGGAGGTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTACCTCTGGAAGAGGAATTAATGTGTTTGGAGGGAGGTTTAA  450

seq1  TTTAATTTAATTTAATTTAATTTAATTTAATGGTGCTGCCAGATCTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAATTTAATTTAATTTAATTTAATGGTGCTGCCAGATCTGGGG  500

seq1  AATTTGACTTAAAATAATAATTTAGTGATCTGATTAGAAAGCTTGCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACTTAAAATAATAATTTAGTGATCTGATTAGAAAGCTTGCTGGA  550

seq1  GAAACTGCTGTGTTTGTGCTTTGTTGCTTGAAGAAACA-TTCAAATTTGT  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAACTGCTGTGTTTGTGCTTTGTTGCTTGAAGAAACATTTCAAATTTGT  600

seq1  TCTGCTAAT-AAGCATTAATGCAGTCTAAAGAGAAA-TTTGTTATCTTAG  647
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  TCTGCTAATAAAGCATTAATGCAGTCTAAAGAGAAATTTTGTTATCTTAG  650

seq1  CAATGTAGAGGTAAAAAGCTGTTTAAATCTTTCATTGAATTAGTTTTAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGAGGTAAAAAGCTGTTTAAATCTTTCATTGAATTAGTTTTAAT  700

seq1  GGGCATAAGAAAGTTGTTCATGTACAAGGGAATTGTCTTTCT-CCGGGTA  746
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGCATAAGAAAGTTGTTCATGTACAAGGGAATTGTCTTTCTCCCGGGTA  750

seq1  GAAGTTAC-TAATTTTATGTAGCGTTTCA-TTTTTAGATGAATTAAAGGC  794
      |||||||| || |||||||||| |||||| ||||||||||||||||||||
seq2  GAAGTTACTTATTTTTATGTAGTGTTTCATTTTTTAGATGAATTAAAGGC  800

seq1  TATAGACTTGCTTTTGGAGCCTTTTG  820
      ||||||||||||||||||||||||||
seq2  TATAGACTTGCTTTTGGAGCCTTTTG  826