BAC Information

Click to search

BAC

Clone NameB6Ng01-164I14
Chromosome11 (Build37)
Map Location 50,015,646 - 50,186,978
singlet/doubletdoublet
Overlap geneSqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik
Upstream geneZfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik
Downstream geneHnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164I14.bB6Ng01-164I14.g
ACCDH956835DH956836
length7681,022
definitionDH956835|Mus musculus domesticus DNA, BAC clone: B6Ng01-164I14, 5' end.DH956836|Mus musculus domesticus DNA, BAC clone: B6Ng01-164I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,186,212 - 50,186,978)(50,015,646 - 50,016,663)
sequence
gaattcatcatctcctaaggtgtcattcccaccaggatagaaaggctctt
caataaatgttaaaattaatgattggcaggttggaaccaaatagccctgg
tgctctagctccatagtaaaacaaacttcaaacagctgagtggtggtggt
gcacacctctgttcccagcactcaggaagcaggccaggccagtctgtaga
gtgagtgccaggatagccaggtctacatgaagcaaaccttgttttgaaaa
atcaaaagaaaaacagaaaaggaaagaagaaaagaatatcacagatttta
aaagaattaaatttatagttgggagatttggatttctcttttgagaaaat
ttctacattgtagcctaggttaacttggaactcagcatgtagcccaagat
agccagcctagagctcactatgtaacccagactaactatgaattgccagt
cctcccatctctctcagcctgtgggtactgggacaggaggtaagggctac
tgtgccttgttgaaagatttaagcttaaaattgtaaaaagctggggttag
caaaattgcccggtggttaagaacatctgttcctctaggggacctgagtt
caagttctagcacctatgttaggtggccatcactgtggttccagggtaca
cacaggggcagacacataattaaaacttgttttaatgtatgaaaagcttc
aaagcagggtatgatcacacaggaatttaatgccagcagttgaaagacgg
ggtggggggtggggggat
gaattcctaaaaatgagatgacattactattgcttgatgtagacagaagt
gtgaaccatgttctagttttctctaatgtcagctaacagtgacagccgtc
actgcaggcaagccacctggagtacacaaagtagtaaggtactaccttaa
aaaaaaaatcccaggccaggcaaccctttttgtgttgccaagactagaca
ggacaggatcctctgaaagcaaagaaggaaaatgaaacttctggtgacca
catgcctggtgggagatgtgggtatagggcagcttccttcagccctgtgg
gtccttcctgtgaggggtctagagagcttggcccttccgattctggcatc
tgtagagactggagttcacctgtagatgggtccacttcttttgaagacaa
atgtgtccagtcatcgtctcctcctgagcagtttcccgactccatctgtt
cctggaatacaacctgctgtgagcatcaggcctaagcaatgacaagtcta
accccactatctgttcccagccagggactgaacctggggcctcatgggcg
ccagctgtatgatgagttacagctccagagctaagtaaattttctctaca
gagttctatcaggaggctcagggtaacagtagaaggacaggattcctcag
gctgaagctagtagacctacctctggctgtcccaccgactccaaggctat
ctttttcatttgctctgtcagagactgagcagggccctccccagccccgt
caggtttgctgacttccgaagagcagctgcttggctgagtgttactcttg
tcttctgtgcctgtgctggaactttctggggtagtgggtgtcaggcggct
tcctcttccctccatgttccacatcaatgttcaacctcattgcctagaga
ggagaagaattgtgggcactgtgggctgaagaaagtgctttcagactcag
ttgccaacagagcatacagattaggaacacggccggccagcataatgatg
tagtagctggggcctggcgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50186212_50186978
seq2: B6Ng01-164I14.b_46_813 (reverse)

seq1  ATCCCCCCA-CCCCCACCCCGTCTTTCAACTGCTGGCATTAAATTCCTGT  49
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCCACCCCCCACCCCGTCTTTCAACTGCTGGCATTAAATTCCTGT  50

seq1  GTGATCATACCCTGCTTTGAAGCTTTTCATACATTAAAACAAGTTTTAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCATACCCTGCTTTGAAGCTTTTCATACATTAAAACAAGTTTTAAT  100

seq1  TATGTGTCTGCCCCTGTGTGTACCCTGGAACCACAGTGATGGCCACCTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCTGCCCCTGTGTGTACCCTGGAACCACAGTGATGGCCACCTAA  150

seq1  CATAGGTGCTAGAACTTGAACTCAGGTCCCCTAGAGGAACAGATGTTCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGCTAGAACTTGAACTCAGGTCCCCTAGAGGAACAGATGTTCTT  200

seq1  AACCACCGGGCAATTTTGCTAACCCCAGCTTTTTACAATTTTAAGCTTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCGGGCAATTTTGCTAACCCCAGCTTTTTACAATTTTAAGCTTAA  250

seq1  ATCTTTCAACAAGGCACAGTAGCCCTTACCTCCTGTCCCAGTACCCACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAACAAGGCACAGTAGCCCTTACCTCCTGTCCCAGTACCCACAG  300

seq1  GCTGAGAGAGATGGGAGGACTGGCAATTCATAGTTAGTCTGGGTTACATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGAGATGGGAGGACTGGCAATTCATAGTTAGTCTGGGTTACATA  350

seq1  GTGAGCTCTAGGCTGGCTATCTTGGGCTACATGCTGAGTTCCAAGTTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCTAGGCTGGCTATCTTGGGCTACATGCTGAGTTCCAAGTTAAC  400

seq1  CTAGGCTACAATGTAGAAATTTTCTCAAAAGAGAAATCCAAATCTCCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTACAATGTAGAAATTTTCTCAAAAGAGAAATCCAAATCTCCCAA  450

seq1  CTATAAATTTAATTCTTTTAAAATCTGTGATATTCTTTTCTTCTTTCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATTTAATTCTTTTAAAATCTGTGATATTCTTTTCTTCTTTCCTT  500

seq1  TTCTGTTTTTCTTTTGATTTTTCAAAACAAGGTTTGCTTCATGTAGACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTTCTTTTGATTTTTCAAAACAAGGTTTGCTTCATGTAGACCT  550

seq1  GGCTATCCTGGCACTCACTCTACAGACTGGCCTGGCCTGCTTCCTGAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCCTGGCACTCACTCTACAGACTGGCCTGGCCTGCTTCCTGAGTG  600

seq1  CTGGGAACAGAGGTGTGCACCACCACCACTCAGCTGTTTGAAGTTTGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACAGAGGTGTGCACCACCACCACTCAGCTGTTTGAAGTTTGTTT  650

seq1  TACTATGGAGCTAGAGCACCAGGGCTATTTGGTTCCAACCTGCCAATCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGAGCTAGAGCACCAGGGCTATTTGGTTCCAACCTGCCAATCAT  700

seq1  TAATTTTAACATTTATTGAAGAGCCTTTCTATCCTGGTGGGAATGACACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAACATTTATTGAAGAGCCTTTCTATCCTGGTGGGAATGACACC  750

seq1  TTAGGAGATGATGAATTC  767
      ||||||||||||||||||
seq2  TTAGGAGATGATGAATTC  768

seq1: chr11_50015646_50016663
seq2: B6Ng01-164I14.g_66_1087

seq1  GAATTCCTAAAAATGAGATGACATTACTATTGCTTGATGTAGACAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAAATGAGATGACATTACTATTGCTTGATGTAGACAGAAGT  50

seq1  GTGAACCATGTTCTAGTTTTCTCTAATGTCAGCTAACAGTGACAGCCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCATGTTCTAGTTTTCTCTAATGTCAGCTAACAGTGACAGCCGTC  100

seq1  ACTGCAGGCAAGCCACCTGGAGTACACAAAGTAGTAAGGTACTACCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGCAAGCCACCTGGAGTACACAAAGTAGTAAGGTACTACCTTAA  150

seq1  AAAAAAAATCCCAGGCCAGGCAACCCTTTTTGTGTTGCCAAGACTAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCCCAGGCCAGGCAACCCTTTTTGTGTTGCCAAGACTAGACA  200

seq1  GGACAGGATCCTCTGAAAGCAAAGAAGGAAAATGAAACTTCTGGTGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGATCCTCTGAAAGCAAAGAAGGAAAATGAAACTTCTGGTGACCA  250

seq1  CATGCCTGGTGGGAGATGTGGGTATAGGGCAGCTTCCTTCAGCCCTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGGTGGGAGATGTGGGTATAGGGCAGCTTCCTTCAGCCCTGTGG  300

seq1  GTCCTTCCTGTGAGGGGTCTAGAGAGCTTGGCCCTTCCGATTCTGGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCTGTGAGGGGTCTAGAGAGCTTGGCCCTTCCGATTCTGGCATC  350

seq1  TGTAGAGACTGGAGTTCACCTGTAGATGGGTCCACTTCTTTTGAAGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGACTGGAGTTCACCTGTAGATGGGTCCACTTCTTTTGAAGACAA  400

seq1  ATGTGTCCAGTCATCGTCTCCTCCTGAGCAGTTTCCCGACTCCATCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCAGTCATCGTCTCCTCCTGAGCAGTTTCCCGACTCCATCTGTT  450

seq1  CCTGGAATACAACCTGCTGTGAGCATCAGGCCTAAGCAATGACAAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATACAACCTGCTGTGAGCATCAGGCCTAAGCAATGACAAGTCTA  500

seq1  ACCCCACTATCTGTTCCCAGCCAGGGACTGAACCTGGGGCCTCATGGGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACTATCTGTTCCCAGCCAGGGACTGAACCTGGGGCCTCATGGGCG  550

seq1  CCAGCTGTATGATGAGTTACAGCTCCAGAGCTAAGTAAATTTTCTCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTATGATGAGTTACAGCTCCAGAGCTAAGTAAATTTTCTCTACA  600

seq1  GAGTTCTATCAGGAGGCTCAGGGTAACAGTAGAAGGACAGGATTCCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTATCAGGAGGCTCAGGGTAACAGTAGAAGGACAGGATTCCTCAG  650

seq1  GCTGAAGCTAGTAGACCTACCTCTGGCTGTCCCACCGACTCCAAGGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCTAGTAGACCTACCTCTGGCTGTCCCACCGACTCCAAGGCTAT  700

seq1  CTTTTTCATTTGCTCTGTCAGAGACTGAGCAGGGCCCTCCCCAGCCCCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATTTGCTCTGTCAGAGACTGAGCAGGGCCCTCCCCAGCCCCGT  750

seq1  CAGGTTTGCTGACTTCCGAAGAGCAGCTGCTTGGCTGAGTGTTACTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTGCTGACTTCCGAAGAGCAGCTGCTTGGCTGAGTGTTACTCTTG  800

seq1  TCTTCTGTGCCTGTGCTGGAACTTTCTGGGGTAGTGGGTGTCAGGCGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTGCCTGTGCTGGAACTTTCTGGGGTAGTGGGTGTCAGGCGGCT  850

seq1  T-CTCTTCCCTCCATGTTCCACATCAATG-TCAACCTCAATGCCTAGAGA  898
      | ||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TCCTCTTCCCTCCATGTTCCACATCAATGTTCAACCTCATTGCCTAGAGA  900

seq1  GGAGAAAGAATTGTGGGCACTGTGGGCTG-AGAAAGTGCTTTCAGACTCA  947
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAG-AAGAATTGTGGGCACTGTGGGCTGAAGAAAGTGCTTTCAGACTCA  949

seq1  GTTGCCAACAGAGCATACAGATTAGG-ACACGGCCGGCCAGCATAAGGAT  996
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  GTTGCCAACAGAGCATACAGATTAGGAACACGGCCGGCCAGCATAATGAT  999

seq1  GTAGTAGCTGGGG-CTGGCGAGA  1018
      ||||||||||||| |||||||||
seq2  GTAGTAGCTGGGGCCTGGCGAGA  1022