BAC Information

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BAC

Clone NameB6Ng01-164N21
Chromosome11 (Build37)
Map Location 70,934,816 - 71,098,515
singlet/doubletdoublet
Overlap geneNlrp1a, Nlrp1b, Nlrp1c
Upstream geneMgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536
Downstream geneLOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164N21.bB6Ng01-164N21.g
ACCDH957081DH957082
length1,098814
definitionDH957081|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N21, 5' end.DH957082|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,097,412 - 71,098,515)(70,934,816 - 70,935,548)
sequence
gaattcacatgcctagttcatgtgccttccttctcctgtctgctctgaat
ctgtaggaataagtgtcctgaatgatgaggtattcaaagggaggaccaga
gatgagatatatactaagtataacacatgctatttacaggggatggtgag
ggagagccaaggtcctcagagagctaagttagacaaaattagagaggaaa
acacagaatacctcaacacagttgccttagtactataaccatgggccagg
gggaagagtgggtccccaaatattgtaatcttgattcctctgaggcacag
gctacagtgtcagaccagccttctcaagtacactcctggacaaggacaca
aaactaatgttctttttatccttaaagtggggcctctaacaagtctcatg
tcagtctgtcccctgcatacatgtggtcctttggctttctttgagtaatg
tgcctttcatcaaattgttagttggttctgtattgttcctcttgtgtggc
accaagggacagaagatgtctaaagatttcttcaaagcggctagcctgaa
cttaggctgagcctttactccccctctgtcctgtatcttcccaccttacc
ctgggtcacagaaatggctgaagtatctccttagagtgggacatcagaaa
aggaagaggatgaggacatgagatagtgagtattctacacagtcaaccat
gcatcctccatctgtgcattcctatccttccatcctcctgtccttgatac
tccagcacccacttttctatccccaacctcatccttgattcacatcctct
aaccctaccacccatcatgctctgactctgcaccctctatcttcttactt
caacattttcctcactcccattttctagatgtccaccttcctactcccct
ctttccatcaatttatctgcctacgctgagccaagtcttccctgctgtgt
ttttcaagttaagagagctagatctcctgcatactgctactggtggtact
agtgcccttacatcttgatcaataccaaccatatactaataaactcacaa
ctcaaggggttatcagcgcccagatttattaaggaccagaccaaaaaa
gaattcatcttggtagatttcttctttgaccaatatgaagtatccttcct
tatccttttttataacttttggttagaaatccatttgatttgacattaga
atggctactccagcttctttcttgggaccatttacttggaaaattgtttt
ccagccttttactctgaggtagtgtctgtctttgtccctgaggtgggttt
cttatatgcagcaaaatcctgggtcctgtttaatcatccagtctgttagt
ctatgtctttttattgggggaattgagtccattgatattaagagatatta
aggaaaactaattgtacttcctgttatttttgttgttagagttgggattc
tgttcttgtgactatcttcttttaggtttgttgaataattactttcttgc
tttttctagggagtagtttccctccttgtgttggaatttaccctttatta
tcctttgaagggctggattcatggaaagatattgtgtgaatttggttttg
tcgtggaatactttggtttctccatctatggagattgagagttttgctgg
gtatagtagtctgggatggcacttacgtaaacactcccttccctgatacc
tggtatatgctttgtcatggcaagagtcactccctatgtaattagagtag
gtggctattctctctccacttctctgatccttgaatagcaattttatttt
ctcttcttgtaattgattggtaggccattgtataaaataaatacttaatg
aatatttaataggggtaaatcatgtagagggaaggagtacatatatggta
ctaagtaagctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71097412_71098515
seq2: B6Ng01-164N21.b_45_1142 (reverse)

seq1  TTTTTTGGTCTGGTCCTTCATTAAATCTTGGGCGCTGTTAACCCCTTGAG  50
      |||||||||||||||||| | |||||| ||||||||| ||||||||||||
seq2  TTTTTTGGTCTGGTCCTT-AATAAATC-TGGGCGCTGATAACCCCTTGAG  48

seq1  TTTGTTGAGTTTGTTGGTATATTTGTTGGTATTGTTCATGAAGTAA-GGC  99
      ||   ||||||| || ||||| | |||||||||| ||| || |||| |||
seq2  TT--GTGAGTTTATTAGTATA-TGGTTGGTATTGATCAAGATGTAAGGGC  95

seq1  ACTAGTTCCCACAGTAGCAGTATGCAGGAGATCTAGCTCTCTTAACTTTG  149
      |||||| ||  |||||||||||||||||||||||||||||||||||||  
seq2  ACTAGTACCACCAGTAGCAGTATGCAGGAGATCTAGCTCTCTTAACTT--  143

seq1  GAGAACCACAGCAGGGAAGACTTGGCTCAGCCTAGGCAGATAAATTGATG  199
      || || ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAAAAACACAGCAGGGAAGACTTGGCTCAGCGTAGGCAGATAAATTGATG  193

seq1  GAAAGAGGGGAGTAGGAAGGTGGACATCTAGAAAATGGGAGTGAGG-AAA  248
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAAGAGGGGAGTAGGAAGGTGGACATCTAGAAAATGGGAGTGAGGAAAA  243

seq1  TGTTGAAGTAAGAAGATAGAGGGATGCAGAGTCAGAGCATGATGGGTGGT  298
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTTGAAGTAAGAAGATAGAGGG-TGCAGAGTCAGAGCATGATGGGTGGT  292

seq1  AGGGTTAGAGGATGTGAATCAAGGATGAGGTTGGGGATAGAAAAGTGGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAGAGGATGTGAATCAAGGATGAGGTTGGGGATAGAAAAGTGGGT  342

seq1  GCTGGAGTATCAAGGACAGGAGGATGGAAGGATAGGAATGCACAGATGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTATCAAGGACAGGAGGATGGAAGGATAGGAATGCACAGATGGA  392

seq1  GGATGCATGGTGGACTGTGTAGAATACTCACTATCTCATGTCCTCATCCT  448
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGATGCATGGTTGACTGTGTAGAATACTCACTATCTCATGTCCTCATCCT  442

seq1  CTTCCTTTTCTGATGTCCCACTCTAAGGAGATACTTCAGCCATTTCTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTCTGATGTCCCACTCTAAGGAGATACTTCAGCCATTTCTGTG  492

seq1  ACCCAGGGTAAGGTGGGAAGATACAGGACAGAGGGGGAGTAAAGGCTCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGTAAGGTGGGAAGATACAGGACAGAGGGGGAGTAAAGGCTCAG  542

seq1  CCTAAGTTCAGGCTAGCCGCTTTGAAGAAATCTTTAGACATCTTCTGTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTTCAGGCTAGCCGCTTTGAAGAAATCTTTAGACATCTTCTGTCC  592

seq1  CTTGGTGCCACACAAGAGGAACAATACAGAACCAACTAACAATTTGATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGCCACACAAGAGGAACAATACAGAACCAACTAACAATTTGATGA  642

seq1  AAGGCACATTACTCAAAGAAAGCCAAAGGACCACATGTATGCAGGGGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACATTACTCAAAGAAAGCCAAAGGACCACATGTATGCAGGGGACA  692

seq1  GACTGACATGAGACTTGTTAGAGGCCCCACTTTAAGGATAAAAAGAACAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACATGAGACTTGTTAGAGGCCCCACTTTAAGGATAAAAAGAACAT  742

seq1  TAGTTTTGTGTCCTTGTCCAGGAGTGTACTTGAGAAGGCTGGTCTGACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGTGTCCTTGTCCAGGAGTGTACTTGAGAAGGCTGGTCTGACAC  792

seq1  TGTAGCCTGTGCCTCAGAGGAATCAAGATTACAATATTTGGGGACCCACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTGTGCCTCAGAGGAATCAAGATTACAATATTTGGGGACCCACT  842

seq1  CTTCCCCCTGGGCCATGGTTATAGTACTAAGGCAACTGTGTTGAGGTATT  898
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCTGGCCCATGGTTATAGTACTAAGGCAACTGTGTTGAGGTATT  892

seq1  CTGTGTTTTCCTCTCTAATTTTGTCTAACTTAGCTCTCTGAGGACCTTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTCCTCTCTAATTTTGTCTAACTTAGCTCTCTGAGGACCTTGG  942

seq1  CTCTCCCTCACCATCCCCTGTAAATAGCATGTGTTATACTTAGTATATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCACCATCCCCTGTAAATAGCATGTGTTATACTTAGTATATAT  992

seq1  CTCATCTCTGGTCCTCCCTTTGAATACCTCATCATTCAGGACACTTATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCTGGTCCTCCCTTTGAATACCTCATCATTCAGGACACTTATTC  1042

seq1  CTACAGATTCAGAGCAGACAGGAGAAGGAAGGCACATGAACTAGGCATGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATTCAGAGCAGACAGGAGAAGGAAGGCACATGAACTAGGCATGT  1092

seq1  GAATTC  1104
      ||||||
seq2  GAATTC  1098

seq1: chr11_70934816_70935548
seq2: B6Ng01-164N21.g_147_882

seq1  ATCCATTTGATTTGACATTAGAATGGCTACTCCAGCTTCTTTCTTGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGATTTGACATTAGAATGGCTACTCCAGCTTCTTTCTTGGGAC  50

seq1  CATTTACTTGGAAAATTGTTTTCCAGCCTTTTACTCTGAGGTAGTGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTGGAAAATTGTTTTCCAGCCTTTTACTCTGAGGTAGTGTCTG  100

seq1  TCTTTGTCCCTGAGGTGGGTTTCTTATATGCAGCAAAATCCTGGGTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCCCTGAGGTGGGTTTCTTATATGCAGCAAAATCCTGGGTCCTG  150

seq1  TTTAATCATCCAGTCTGTTAGTCTATGTCTTTTTATTGGGGGAATTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCATCCAGTCTGTTAGTCTATGTCTTTTTATTGGGGGAATTGAGT  200

seq1  CCATTGATATTAAGAGATATTAAGGAAAACTAATTGTACTTCCTGTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATATTAAGAGATATTAAGGAAAACTAATTGTACTTCCTGTTATT  250

seq1  TTTGTTGTTAGAGTTGGGATTCTGTTCTTGTGACTATCTTCTTTTAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTAGAGTTGGGATTCTGTTCTTGTGACTATCTTCTTTTAGGTT  300

seq1  TGTTGAATAATTACTTTCTTGCTTTTTCTAGGGAGTAGTTTCCCTCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATAATTACTTTCTTGCTTTTTCTAGGGAGTAGTTTCCCTCCTTG  350

seq1  TGTTGGAATTTACCCTTTATTATCCTTTGAAGGGCTGGATTCATGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAATTTACCCTTTATTATCCTTTGAAGGGCTGGATTCATGGAAAG  400

seq1  ATATTGTGTGAATTTGGTTTTGTCGTGGAATACTTTGGTTTCTCCATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGTGAATTTGGTTTTGTCGTGGAATACTTTGGTTTCTCCATCTA  450

seq1  TGGAGATTGAGAGTTTTGCTGGGTATAGTAGTCTGGGATGGCACTTACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTGAGAGTTTTGCTGGGTATAGTAGTCTGGGATGGCACTTACGT  500

seq1  AAACACTCCCTTCCCTGATACCTGGTATATGCTTTGTCATGGCAAGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCCCTTCCCTGATACCTGGTATATGCTTTGTCATGGCAAGAGTC  550

seq1  ACTCCCTATGTAATTAGAGTAGGTGGCTATTCTCTCTCCACTTCTCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTATGTAATTAGAGTAGGTGGCTATTCTCTCTCCACTTCTCTGAT  600

seq1  CCTTGAATAGCAATTTTA-TTTCTCTTCTTGTAATTGATTGGTAGGCCAT  649
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTTGAATAGCAATTTTATTTTCTCTTCTTGTAATTGATTGGTAGGCCAT  650

seq1  TGTATAAAATAAATACTTAATGAATATTT-ATA-GGGTAAATCATGTAGA  697
      ||||||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  TGTATAAAATAAATACTTAATGAATATTTAATAGGGGTAAATCATGTAGA  700

seq1  GGGAAGGAGTACATATATGGTACTAAGTAAGCTATG  733
      ||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGTACATATATGGTACTAAGTAAGCTATG  736