BAC Information

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BAC

Clone NameB6Ng01-165K24
Chromosome11 (Build37)
Map Location 102,278,280 - 102,446,799
singlet/doubletdoublet
Overlap geneGrn, BC025575, Itga2b, Mdk-ps1, LOC100040792
Upstream geneAarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39
Downstream geneFzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165K24.bB6Ng01-165K24.g
ACCDH957679DH957680
length988793
definitionDH957679|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K24, 5' end.DH957680|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,445,816 - 102,446,799)(102,278,280 - 102,279,069)
sequence
gaattcaactcacagagatctggctgcctctgcaaacagttttcttttta
ttgccctaccaaggacagcatcctttaaaccagatacatcaggacttcac
caaatacagccaatgtaaaatggcagttcgtgctcctattcctgaaaccc
aaaatctaacagagagtggagaccagtcccaggcctcacactaataaata
aaggtgaaattccacttcacccctccagccccaacttacacgctctccta
gcccagaccccaaaggaccccagaatggttgattgcactagacttacaag
atgctcctttctgtaaacccttacaccctgagtcccagtacctgtctgtc
attgaggacccaaactcccatgttacccagctcacctggttgatcctacc
cctgggacacaaggacagtccccacctctttagccaggccttctctagga
acccccttgacttcttgaaccctcaagccagggtccgccaatatgtgaat
gatcctttgtagcccacagaaggtccccaggaaggaactgagtttactcc
ttatctgagagggggctataaggtttctaaaataaagttcggttgtgcca
gctgtcaatcaaatacttagtactagccatagctaaagagaaagggactt
ggcgaggactgggtaaaatctagcttttccttcccattacaaaaataaaa
taataataataaaataaattaaacaacttaggggatttttatggggaggt
tacaagattcttcagactctgaattttcagtatatggggaattttgcctg
gttataaatgaaaccagccaataaaagaaacacaaaactggggctggaga
gatggctcagaggttaagggcacagactgttcttccagaggtccctgagt
tcaattctccaaagtagaaaagacaagattcaccatcaacacgccctaaa
gttgggacacccaactctactcaaccatcatctcatca
gaattccacacccctaagccccttaccccataaaaaaacccctagctttc
gagcctcgcggcagacatccattatctcctgtgtgggatacatgtcggtc
tggagctccgtaattaaacgacctcatgtaattacatcaagatggtcctt
tgtgattttttgggtgtacactgaatcgggaattgagtgggggtttcccc
actaggttctatcagagcaaagcaagttggggagggataagtcagcctac
acttccacatcactgttcatcaccaaaggaagtcaggacaggaactcaca
caggacagggacttggagtcaggagctgatgcagaggccatggagggatg
ctgcttactggcttcctcacctggcttgctcatcctgatgttttatagaa
cccaggaccaccagtgtagggagagcaccacccacaatgagatgggccct
cccccatcaatcattaattaacaagttgccctggtggtggtaggtgacag
ctgcagctgggtacaagtttaatctcagctctagggagacagaggcagat
gcaggtggatctctgtgagtttgagggtagcctgatctacggagctagtg
ccaagatagccagagctacaacaaaaatgagagagagagagagagagaga
gatatgagaaaagagacatgagagagaggagagagaggagagaaatgaga
gagagagagggagagagagagagatcccatatgcttgcctactgcccaat
ctttccaatcttttggggcattttctctaattaactttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102445816_102446799
seq2: B6Ng01-165K24.b_46_1033 (reverse)

seq1  TGATGAGATGATGGTTGAGTAGAGTTGGGTGTCCCAACTTTAGGGCGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGATGATGGTTGAGTAGAGTTGGGTGTCCCAACTTTAGGGCGTGT  50

seq1  TGATGGTGAATCTTGTCTTTTCTACTTTGGAGAATTGAACTCA-GGACCT  99
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGATGGTGAATCTTGTCTTTTCTACTTTGGAGAATTGAACTCAGGGACCT  100

seq1  CTGGAAGAACAGTCTGTGCCCTTAACCTCTGAGCCATCTCTCCAGCCCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAACAGTCTGTGCCCTTAACCTCTGAGCCATCTCTCCAGCCCCA  150

seq1  G-TTTGTGTTTCTTTTATTGGCTGGTTTCATTTATAACCAGGC-AAATTC  197
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTTTGTGTTTCTTTTATTGGCTGGTTTCATTTATAACCAGGCAAAATTC  200

seq1  CCCATATACTG-AAATTCAGAGTCTGAAGAATCTTGTAACCTCCCCATAA  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCATATACTGAAAATTCAGAGTCTGAAGAATCTTGTAACCTCCCCATAA  250

seq1  AAATCCCCTAAGTTGTTTAATTTATTTTATTATTATTATTTTATTTTTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCTAAGTTGTTTAATTTATTTTATTATTATTATTTTATTTTTGT  300

seq1  AATGGGAAGGAAAAGCTAGATTTTACCCAGTCCTCGCCAAGTCCCTTTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGGAAAAGCTAGATTTTACCCAGTCCTCGCCAAGTCCCTTTCT  350

seq1  CTTTAGCTATGGCTAGTACTAAGTATTTGATTGACAGCTGGCACAACCGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTATGGCTAGTACTAAGTATTTGATTGACAGCTGGCACAACCGA  400

seq1  ACTTTATTTTAGAAACCTTATAGCCCCCTCTCAGATAAGGAGTAAACTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTTTAGAAACCTTATAGCCCCCTCTCAGATAAGGAGTAAACTCA  450

seq1  GTTCCTTCCTGGGGACCTTCTGTGGGCTACAAAGGATCATTCACATATTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCCTGGGGACCTTCTGTGGGCTACAAAGGATCATTCACATATTG  500

seq1  GCGGACCCTGGCTTGAGGGTTCAAGAAGTCAAGGGGGTTCCTAGAGAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGACCCTGGCTTGAGGGTTCAAGAAGTCAAGGGGGTTCCTAGAGAAGG  550

seq1  CCTGGCTAAAGAGGTGGGGACTGTCCTTGTGTCCCAGGGGTAGGATCAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTAAAGAGGTGGGGACTGTCCTTGTGTCCCAGGGGTAGGATCAAC  600

seq1  CAGGTGAGCTGGGTAACATGGGAGTTTGGGTCCTCAATGACAGACAGGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGCTGGGTAACATGGGAGTTTGGGTCCTCAATGACAGACAGGTA  650

seq1  CTGGGACTCAGGGTGTAAGGGTTTACAGAAAGGAGCATCTTGTAAGTCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTCAGGGTGTAAGGGTTTACAGAAAGGAGCATCTTGTAAGTCTA  700

seq1  GTGCAATCAACCATTCTGGGGTCCTTTGGGGTCTGGGCTAGGAGAGCGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATCAACCATTCTGGGGTCCTTTGGGGTCTGGGCTAGGAGAGCGTG  750

seq1  TAAGTTGGGGCTGGAGGGGTGAAGTGGAATTTCACCTTTATTTATTAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGGGCTGGAGGGGTGAAGTGGAATTTCACCTTTATTTATTAGTG  800

seq1  TGAGGCCTGGGACTGGTCTCCACTCTCTGTTAGATTTTGGGTTTCAGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTGGGACTGGTCTCCACTCTCTGTTAGATTTTGGGTTTCAGGAA  850

seq1  TAGGAGCACGAACTGCCATTTTACATTGGCTGTATTTGGTGAAGTCCTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCACGAACTGCCATTTTACATTGGCTGTATTTGGTGAAGTCCTGA  900

seq1  TGTATCTGGTTTAAAGGATGCTGTCCTTGGTAGGGCAATAAAAAGAAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGGTTTAAAGGATGCTGTCCTTGGTAGGGCAATAAAAAGAAAAC  950

seq1  TGTTTGCAGAGGCAGCCAGATCTCTGTGAGTTGAATTC  984
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCAGAGGCAGCCAGATCTCTGTGAGTTGAATTC  988

seq1: chr11_102278280_102279069
seq2: B6Ng01-165K24.g_67_859

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAAAACCCCTAGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAAAACCCCTAGCTTTC  50

seq1  GAGCCTCGCGGCAGACATCCATTATCTCCTGTGTGGGATACATGTCGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCGCGGCAGACATCCATTATCTCCTGTGTGGGATACATGTCGGTC  100

seq1  TGGAGCTCCGTAATTAAACGACCTCATGTAATTACATCAAGATGGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCCGTAATTAAACGACCTCATGTAATTACATCAAGATGGTCCTT  150

seq1  TGTGATTTTTTGGGTGTACACTGAATCGGGAATTGAGTGGGGGTTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTTGGGTGTACACTGAATCGGGAATTGAGTGGGGGTTTCCCC  200

seq1  ACTAGGTTCTATCAGAGCAAAGCAAGTTGGGGAGGGATAAGTCAGCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTCTATCAGAGCAAAGCAAGTTGGGGAGGGATAAGTCAGCCTAC  250

seq1  ACTTCCACATCACTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACATCACTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACA  300

seq1  CAGGACAGGGACTTGGAGTCAGGAGCTGATGCAGAGGCCATGGAGGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGGACTTGGAGTCAGGAGCTGATGCAGAGGCCATGGAGGGATG  350

seq1  CTGCTTACTGGCTTCCTCACCTGGCTTGCTCATCCTGATGTTTTATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACTGGCTTCCTCACCTGGCTTGCTCATCCTGATGTTTTATAGAA  400

seq1  CCCAGGACCACCAGTGTAGGGAGAGCACCACCCACAATGAGATGGGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACCACCAGTGTAGGGAGAGCACCACCCACAATGAGATGGGCCCT  450

seq1  CCCCCATCAATCATTAATTAACAAGTTGCCCTGGTGGTGGTAGGTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCAATCATTAATTAACAAGTTGCCCTGGTGGTGGTAGGTGACAG  500

seq1  CTGCAGCTGGGTACAAGTTTAATCTCAGCTCTAGGGAGACAGAGGCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGGGTACAAGTTTAATCTCAGCTCTAGGGAGACAGAGGCAGAT  550

seq1  GCAGGTGGATCTCTGTGAGTTTGAGGGTAGCCTGATCTACGGAGCTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATCTCTGTGAGTTTGAGGGTAGCCTGATCTACGGAGCTAGTG  600

seq1  CCAAGATAGCCAGAGCTACAACAAAAATGAGAGAGAGAGAGAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAGCCAGAGCTACAACAAAAATGAGAGAGAGAGAGAGAGAGAGA  650

seq1  GATATGAG-AAAGAGACATGAGAGAGAGGAGAGAGAGGAGAGAAATGAGA  699
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAGAAAAGAGACATGAGAGAGAGGAGAGAGAGGAGAGAAATGAGA  700

seq1  GAGAGAGAGGGAGAGAGAGAGAGATCCCATAGGCTTGCCTACTGCCCAAT  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGAGAGAGGGAGAGAGAGAGAGATCCCATATGCTTGCCTACTGCCCAAT  750

seq1  C-TTCCAATCTTTTGGGGCATTTTCTCT-ATTAACTTTCTTTT  790
      | |||||||||||||||||||||||||| ||||||||||||||
seq2  CTTTCCAATCTTTTGGGGCATTTTCTCTAATTAACTTTCTTTT  793