BAC Information

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BAC

Clone NameB6Ng01-165M20
Chromosome11 (Build37)
Map Location 119,435,054 - 119,615,285
singlet/doubletdoublet
Overlap gene4932417H02Rik
Upstream geneD11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1
Downstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165M20.bB6Ng01-165M20.g
ACCDH957764DH957765
length9461,129
definitionDH957764|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M20, 5' end.DH957765|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,435,054 - 119,435,997)(119,614,169 - 119,615,285)
sequence
gaattccagcatcatcgctcttgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtaggcattagcaccatgctacgcatataaggggcagaga
gcaattttgtgcaatggattctgggaatggagctcaggctgtcaggttta
tacatcaagtgctctgcaccctccagagtcactgccctggctctgctgtt
agttctgagacgggcatcccatgtgcaagcttgctatgtagctgagactg
acttgagattcccagtcttcctgattctgcctcccaagggccgggattga
aggtatctgccctgtgcccagctgactacctcagaagcagaaacaaagca
attcgccctggtggcatgcatcagtcagggttccagagagagggagagag
gcagaaagagaggacgagaatgaggaggagagacagagagagacagtgta
gtgcaggtgctgatttggggagctggttcaccaggttgtgggcccagcaa
gtctggaatttgcaggagcaaacgccttgagaccagaggtatctgatttg
tccttcctgtaggaatctgggtctttgcctcttttttttttttttttctc
tgtgtagccctggctgtcctggatctcactttgtagaccaggctggcctc
gaactcagaaatctgtctgcctctgcctcccaagtgctgggattaaaggt
gtgtgccaccatgcctggctggtcttgcctctttattttaattaattatt
agttagtttattgattgattaataatcgatttgttttttaagacagagtt
ctctgtgtaacagtcctgggctggtctggaactcactttcacaccaggtt
ggtcttgaactcacagtagatcctcctgcctctgcttccgtagtgctggg
attcaaaagcatgctccaccactccttggcttgtttttatttattg
gaattctttcagaaccgctaatacaggaattaaaaaattgatttacacat
gagttttatcccatgcattattttagttttaatttttgatctaagatatt
ggccctttaatcaaaataatccttcagaagtcagcgtgcatatgaagctc
gttaccaggcagccgggtctagtgtgggcatcaggacaagcaccacagct
cctgaaggaaggaaggctcgcctccgccagggcatttctcagcaccagaa
ccatctttagatgcaattcactgcaaccagctccagagaagacacatgct
ccatcaccaagactgtggcattgtggggtgggggtgctccagttcctaag
caaggccgggtacctcccagtcatgtgccactctgaagggcacagtccgc
ttttcagggcagtacccacatgtcttgtttttaaatgagccactgaaaca
gcactgtcctggcctttcacacacacaatgaggaacaacttttaacaagg
tgagatagccctaagttcaggagtcttaagacgaggcattctgagcagtt
gtaccttaaggcagcccttctctgtggtgagctatgcctcgtcccatagg
ccgggtggaaatcggagggcggagctgggtggagctcatgctactcacct
gtttcgttagttcagaggtctcccggggcacactacaagttaacacacaa
gtcacataactgtaggcacccaatcatcaataacaacttaaccgagtggt
ggtctgtatgctctgagactctgaaatcttggccaaggagcagaagccac
ttctggtggacagcaactcagttgatggtctccaacaggctcctagagcc
tgggtcagccagtttctcgccattattctgagcttatcccccaatgaact
gtccattatttttaaagccacttagctgcttgacagtttcagcttctaaa
tgctcttcaaaccattctacaactcagcgacacatttaattagaaatgat
aagcaaattccactcccaaccatacttgaaatgaatcaacacctaaagaa
gaaggaaaaaccggggaggttctgcaaccctgtgtcatataaaataacct
taagggggcactggaacacccattccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_119435054_119435997
seq2: B6Ng01-165M20.b_35_979

seq1  GAATTCCAGCATCATCGCTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCATCATCGCTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTAGGCATTAGCACCATGCTACGCATATAAGGGGCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTAGGCATTAGCACCATGCTACGCATATAAGGGGCAGAGA  100

seq1  GCAATTTTGTGCAATGGATTCTGGGAATGGAGCTCAGGCTGTCAGGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTGTGCAATGGATTCTGGGAATGGAGCTCAGGCTGTCAGGTTTA  150

seq1  TACATCAAGTGCTCTGCACCCTCCAGAGTCACTGCCCTGGCTCTGCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAAGTGCTCTGCACCCTCCAGAGTCACTGCCCTGGCTCTGCTGTT  200

seq1  AGTTCTGAGACGGGCATCCCATGTGCAAGCTTGCTATGTAGCTGAGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGACGGGCATCCCATGTGCAAGCTTGCTATGTAGCTGAGACTG  250

seq1  ACTTGAGATTCCCAGTCTTCCTGATTCTGCCTCCCAAGGGCCGGGATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGATTCCCAGTCTTCCTGATTCTGCCTCCCAAGGGCCGGGATTGA  300

seq1  AGGTATCTGCCCTGTGCCCAGCTGACTACCTCAGAAGCAGAAACAAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCTGCCCTGTGCCCAGCTGACTACCTCAGAAGCAGAAACAAAGCA  350

seq1  ATTCGCCCTGGTGGCATGCATCAGTCAGGGTTCCAGAGAGAGGGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCCCTGGTGGCATGCATCAGTCAGGGTTCCAGAGAGAGGGAGAGAG  400

seq1  GCAGAAAGAGAGGACGAGAATGAGGAGGAGAGACAGAGAGAGACAGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGAGAGGACGAGAATGAGGAGGAGAGACAGAGAGAGACAGTGTA  450

seq1  GTGCAGGTGCTGATTTGGGGAGCTGGTTCACCAGGTTGTGGGCCCAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTGCTGATTTGGGGAGCTGGTTCACCAGGTTGTGGGCCCAGCAA  500

seq1  GTCTGGAATTTGCAGGAGCAAACGCCTTGAGACCAGAGGTATCTGATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAATTTGCAGGAGCAAACGCCTTGAGACCAGAGGTATCTGATTTG  550

seq1  TCCTTCCTGTAGGAATCTGGGTC-TTGCCTCTTTTTTTTTTTTTTTTCTC  599
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTTCCTGTAGGAATCTGGGTCTTTGCCTCTTTTTTTTTTTTTTTTCTC  600

seq1  TGTGTAGCCCTGGCTGTCCTGGATCTCACTTTGTAGACCAGGCTGGCCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGTCCTGGATCTCACTTTGTAGACCAGGCTGGCCTC  650

seq1  GAACTCAGAAATCTGTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCTGTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGT  700

seq1  GTGTGCCACCATGCCTGGCTGGTCTTGCCTCTTTATTTTAATTAATTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGTGCCACCATGCCTGGCTGGTCTTGCCTCTTTATTTTAATTAATT-AT  749

seq1  TAGTTAGTTAATTGATTGATTAATTAATCGATTTGTTTTTCAAGACAGAG  799
      ||||||||| ||||||||||||| |||||||||||||||| |||||||||
seq2  TAGTTAGTTTATTGATTGATTAA-TAATCGATTTGTTTTTTAAGACAGAG  798

seq1  TTTCTCTGTGTAACAGTCCT-GGCTGTCCTGGAACTCACTTTCTACACCA  848
       ||||||||||||||||||| |||||  ||||||||||||||| ||||||
seq2  -TTCTCTGTGTAACAGTCCTGGGCTGGTCTGGAACTCACTTTC-ACACCA  846

seq1  GGTTGGCCTTGAACTCACAG-AGATCCTCCTGCCTCTGCTTTCCGAGTGC  897
      |||||| ||||||||||||| |||||||||||||||||||| |  |||||
seq2  GGTTGGTCTTGAACTCACAGTAGATCCTCCTGCCTCTGCTTCCGTAGTGC  896

seq1  TGGGA-TCAAAAGCATGCTCCACCACTCC-TGGCTTGTTTTTATTTATT  944
      ||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGGATTCAAAAGCATGCTCCACCACTCCTTGGCTTGTTTTTATTTATT  945

seq1: chr11_119614169_119615285
seq2: B6Ng01-165M20.g_70_1198 (reverse)

seq1  GGTGGAATGGGTGCT-CAGCTGCCCCTTAGTGTCTTCTTAT---GCACAC  46
      ||||||||||||| | |||   |||||||  ||  | ||||    |||| 
seq2  GGTGGAATGGGTGTTCCAGTGCCCCCTTAAGGTTATTTTATATGACACAG  50

seq1  GGCTGCAGAACCTCCC--GTGTTTCCTTC-TCTTTAGTTGTTGATTCATT  93
      || |||||||||||||  || |||||||| ||||||| ||||||||||||
seq2  GGTTGCAGAACCTCCCCGGTTTTTCCTTCTTCTTTAGGTGTTGATTCATT  100

seq1  TCAAGTATGGTT-GGAGTGGAATTTGCTTATCATTTCTAATT-AATGTGT  141
      |||||||||||| ||||||||||||||||||||||||||||| |||||| 
seq2  TCAAGTATGGTTGGGAGTGGAATTTGCTTATCATTTCTAATTAAATGTG-  149

seq1  TCGCTGAGTTGTAGAATGGTTTG-AGAGCATTTAGAAGCTGAAACTGTC-  189
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TCGCTGAGTTGTAGAATGGTTTGAAGAGCATTTAGAAGCTGAAACTGTCA  199

seq1  AGCAGCTAAGTGGCTTT-AAAATAATGGACAGTTCATTGGGGGATAAGCT  238
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCAGCTAAGTGGCTTTAAAAATAATGGACAGTTCATTGGGGGATAAGCT  249

seq1  CAGAATAATGGCGAGAAACTGGCTGACCCAGGCTCTAGGAGCCTGTTGGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAATGGCGAGAAACTGGCTGACCCAGGCTCTAGGAGCCTGTTGGA  299

seq1  GACCATC-ACTGAGTTGCTGTCCACCAGAAGTGGCTTCTGCTCCTTGGCC  337
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCAACTGAGTTGCTGTCCACCAGAAGTGGCTTCTGCTCCTTGGCC  349

seq1  AAGATTTCAGAGTCTCAGAGCATACAGACCACCACTCGGTTAAGTTGTTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCAGAGTCTCAGAGCATACAGACCACCACTCGGTTAAGTTGTTA  399

seq1  TTGATGATTGGGTGCCTACAGTTATGTGACTTGTGTGTTAACTTGTAGTG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATTGGGTGCCTACAGTTATGTGACTTGTGTGTTAACTTGTAGTG  449

seq1  TGCCCCGGGAGACCTCTGAACTAACGAAACAGGTGAGTAGCATGAGCTCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCGGGAGACCTCTGAACTAACGAAACAGGTGAGTAGCATGAGCTCC  499

seq1  ACCCAGCTCCGCCCTCCGATTTCCACCCGGCCTATGGGACGAGGCATAGC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTCCGCCCTCCGATTTCCACCCGGCCTATGGGACGAGGCATAGC  549

seq1  TCACCACAGAGAAGGGCTGCCTTAAGGTACAACTGCTCAGAATGCCTCGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAGAGAAGGGCTGCCTTAAGGTACAACTGCTCAGAATGCCTCGT  599

seq1  CTTAAGACTCCTGAACTTAGGGCTATCTCACCTTGTTAAAAGTTGTTCCT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACTCCTGAACTTAGGGCTATCTCACCTTGTTAAAAGTTGTTCCT  649

seq1  CATTGTGTGTGTGAAAGGCCAGGACAGTGCTGTTTCAGTGGCTCATTTAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTGTGTGAAAGGCCAGGACAGTGCTGTTTCAGTGGCTCATTTAA  699

seq1  AAACAAGACATGTGGGTACTGCCCTGAAAAGCGGACTGTGCCCTTCAGAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGACATGTGGGTACTGCCCTGAAAAGCGGACTGTGCCCTTCAGAG  749

seq1  TGGCACATGACTGGGAGGTACCCGGCCTTGCTTAGGAACTGGAGCACCCC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATGACTGGGAGGTACCCGGCCTTGCTTAGGAACTGGAGCACCCC  799

seq1  CACCCCACAATGCCACAGTCTTGGTGATGGAGCATGTGTCTTCTCTGGAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACAATGCCACAGTCTTGGTGATGGAGCATGTGTCTTCTCTGGAG  849

seq1  CTGGTTGCAGTGAATTGCATCTAAAGATGGTTCTGGTGCTGAGAAATGCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGCAGTGAATTGCATCTAAAGATGGTTCTGGTGCTGAGAAATGCC  899

seq1  CTGGCGGAGGCGAGCCTTCCTTCCTTCAGGAGCTGTGGTGCTTGTCCTGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGGAGGCGAGCCTTCCTTCCTTCAGGAGCTGTGGTGCTTGTCCTGA  949

seq1  TGCCCACACTAGACCCGGCTGCCTGGTAACGAGCTTCATATGCACGCTGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACACTAGACCCGGCTGCCTGGTAACGAGCTTCATATGCACGCTGA  999

seq1  CTTCTGAAGGATTATTTTGATTAAAGGGCCAATATCTTAGATCAAAAATT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAGGATTATTTTGATTAAAGGGCCAATATCTTAGATCAAAAATT  1049

seq1  AAAACTAAAATAATGCATGGGATAAAACTCATGTGTAAATCAATTTTTTA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAATAATGCATGGGATAAAACTCATGTGTAAATCAATTTTTTA  1099

seq1  ATTCCTGTATTAGCGGTTCTGAAAGAATTC  1117
      ||||||||||||||||||||||||||||||
seq2  ATTCCTGTATTAGCGGTTCTGAAAGAATTC  1129