BAC Information

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BAC

Clone NameB6Ng01-165M24
Chromosome11 (Build37)
Map Location 95,153,194 - 95,295,235
singlet/doubletdoublet
Overlap geneMyst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483
Upstream gene3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4
Downstream geneNxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165M24.bB6Ng01-165M24.g
ACCDH957770DH957771
length1,1651,127
definitionDH957770|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M24, 5' end.DH957771|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,153,194 - 95,154,354)(95,294,119 - 95,295,235)
sequence
gaattctactatgctgacaggaaactgaagaaacacaaagagtaaggaaa
ggaagtatgaagaagacatcaggaaaacgctgggctcaggatgggcacag
tgacatctgcctgtagtcctcattagtagtatacaggctaaggcagctga
agagttcaagaccagcccacgcagcacagggagacgagaccctgcctaga
gggctgggaaagggaagggggatgagggaaacctgactccaagtctacat
ggaaatataactgcagacacaagaccgcagagaaagcacactgctctcct
cagtgtcacttccccttctgggaactgacaccctgcatctatcagcctcc
tgggttgcatcactgagcaggctcaagtggaataaccaatagatctccca
cgtctgctacactcaacatctctccactactatctcaacaggtgagcatt
caaaaacttggaatctttcatttctttttctcctatctcctagtagcttc
ctctccttcagaacatatcccgaatttaatcttatcttcgacattttacc
aataacacactggtctaagctatcatttacagcaagaacttctaagcatg
tttccaatgcacctattgggtgtcatctctttctcctgcagttgttctct
acaagttaagtagttgttgcttcagacacattcttcttctgcctgcaccc
tctaaatgcttccaactgccatcggaacaaaacatagtcctgtgctgaac
attttgatcctttatgatctcaatcctccgccttcatttcccatggtgct
ccaatcatacagtctaccttcaaaccctgtcatccccagctcacggccac
ggcactttactattctgtctcctttagctctccccactcgattctttatc
ccctgctactatgacaccgtaaacatctaaatcctatgtcaatctcatat
ggctttcttgacctcctctagcaaagcagtatgttagcctccctttgagc
acagtccctcttcttttctattggtttttcatggtgtctattcacaacat
aatggatatattataccaggtttccaatgggaatggtaacttcttgggtt
gccaggttgcttttatctttttgaattttacctttaagtactgaatcctt
tggctatcccaaaaa
gaattccaatcatacttacagtaaactaagtgctacttagaactcagagg
ctgacaattaactagaatgcccagaactgtaattcttctataatgtctca
ctcaaatcttaacataccccctttttaaagattttatgcatctgagtgat
tgtctgcatgtatatatatatatatatatatatatatatgcaccacatta
agctaggtaccaggggagcagaagacggtgcaagtgcccctggaattaaa
gttatgaacagctgtaagtcgctatgtgggtgctgggaatgaaaacccag
gcctttgcaagaggagcaaatgttcttaactgctgagccatctttccagt
ctcacacatatccttttgatagagataatgacacccaggataagtgctta
ggaaaagattaaaatctggggatgaagagatgcctcggcagtgagcctag
gcagtaggcacctctatctactgagccatagcatgggtcccactgcacag
gctttcacaaagtaatgtcatttgagaaatcaatcctaggaaatcagcct
ataaagatttatgcacaaggatatctatgacaggataatttacagatcaa
agtagggaagaatgttttaattaatagagttatgtattcagggactaggg
atataactcaggtagtcaagtatttggtagcatgcacaaagccctgtgtt
ctactctgagaaccatataaaccagacatgactgcacatgcctgtactca
cagaacttgagagttagagacaaaagaatcagaagttcaaataattccta
ttaccccaacaagtgccaagccagttcacactacatgagaccctatctca
aaaatataaaacaaaagcaaacaaaaccacccttacctaaacaaacacta
acagattatgtatccatgccttagatgcctatgattcctttgtttgtggg
tttgttttgtctgtgtgtatgattctgtgtgtgcataatgtagaagccag
atgaggcttgtcaggtctctttggtctgtcgttctttgcttcattccctc
agactgtgtctgtcacctgacttcagaagggtctactgtgtttccttggt
tggacaaggctagccgagcctcccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95153194_95154354
seq2: B6Ng01-165M24.b_46_1210

seq1  GAATTCTACTATGCTGACAGGAAACTGAAGAAACACAAAGAGTAAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTATGCTGACAGGAAACTGAAGAAACACAAAGAGTAAGGAAA  50

seq1  GGAAGTATGAAGAAGACATCAGGAAAACGCTGGGCTCAGGATGGGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTATGAAGAAGACATCAGGAAAACGCTGGGCTCAGGATGGGCACAG  100

seq1  TGACATCTGCCTGTAGTCCTCATTAGTAGTATACAGGCTAAGGCAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTGCCTGTAGTCCTCATTAGTAGTATACAGGCTAAGGCAGCTGA  150

seq1  AGAGTTCAAGACCAGCCCACGCAGCACAGGGAGACGAGACCCTGCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAAGACCAGCCCACGCAGCACAGGGAGACGAGACCCTGCCTAGA  200

seq1  GGGCTGGGAAAGGGAAGGGGGATGAGGGAAACCTGACTCCAAGTCTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGAAAGGGAAGGGGGATGAGGGAAACCTGACTCCAAGTCTACAT  250

seq1  GGAAATATAACTGCAGACACAAGACCGCAGAGAAAGCACACTGCTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATAACTGCAGACACAAGACCGCAGAGAAAGCACACTGCTCTCCT  300

seq1  CAGTGTCACTTCCCCTTCTGGGAACTGACACCCTGCATCTATCAGCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCACTTCCCCTTCTGGGAACTGACACCCTGCATCTATCAGCCTCC  350

seq1  TGGGTTGCATCACTGAGCAGGCTCAAGTGGAATAACCAATAGATCTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGCATCACTGAGCAGGCTCAAGTGGAATAACCAATAGATCTCCCA  400

seq1  CGTCTGCTACACTCAACATCTCTCCACTACTATCTCAACAGGTGAGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGCTACACTCAACATCTCTCCACTACTATCTCAACAGGTGAGCATT  450

seq1  CAAAAACTTGGAATCTTTCATTTCTTTTTCTCCTATCTCCTAGTAGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTTGGAATCTTTCATTTCTTTTTCTCCTATCTCCTAGTAGCTTC  500

seq1  CTCTCCTTCAGAACATATCCCGAATTTAATCTTATCTTCGACATTTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTCAGAACATATCCCGAATTTAATCTTATCTTCGACATTTTACC  550

seq1  AATAACACACTGGTCTAAGCTATCATTTACAGCAAGAACTTCTAAGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACACTGGTCTAAGCTATCATTTACAGCAAGAACTTCTAAGCATG  600

seq1  TTTCCAATGCACCTATTGGGTGTCATCTCTTTCTCCTGCAGTTGTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGCACCTATTGGGTGTCATCTCTTTCTCCTGCAGTTGTTCTCT  650

seq1  ACAAGTTAAGTAGTTGTTGCTTCAGACACATTCTTCTTCTGCCTGCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTAAGTAGTTGTTGCTTCAGACACATTCTTCTTCTGCCTGCACCC  700

seq1  TCTAAATGCTTCCAACTGCCATCGGAACAAAACATAGTCCTGTGCTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGCTTCCAACTGCCATCGGAACAAAACATAGTCCTGTGCTGAAC  750

seq1  ATTTTGATCCTTTATGATCTCAATCCTCCGCCTTCATTTCCCATGGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATCCTTTATGATCTCAATCCTCCGCCTTCATTTCCCATGGTGCT  800

seq1  CCAATCATACAGTCTACCTTCAAACCCTGTCATCCCCAGCTCACGGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATACAGTCTACCTTCAAACCCTGTCATCCCCAGCTCACGGCCAC  850

seq1  GGCAC-TTACTATTCTGTCTCCTTTAGCTCTCCCCACTCGATTCTTTATC  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTACTATTCTGTCTCCTTTAGCTCTCCCCACTCGATTCTTTATC  900

seq1  CCCTGCTACTATGACACCGTAAACATCTAAATCCTATGTCAATCTCATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTACTATGACACCGTAAACATCTAAATCCTATGTCAATCTCATAT  950

seq1  GGCTTTCTTGACCTCCTCTAGCAAAAGCAGTATGTTAGCCTCCCTTTGAG  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCTTTCTTGACCTCCTCTAGC-AAAGCAGTATGTTAGCCTCCCTTTGAG  999

seq1  CACAGTCCCTCTCTTTCTCTATTGGTTTTTCATGGTGTCTA-TCACAACA  1048
      ||||||||||||  || |||||||||||||||||||||||| ||||||||
seq2  CACAGTCCCTCTTCTTTTCTATTGGTTTTTCATGGTGTCTATTCACAACA  1049

seq1  TAAATGGATATTAATATA-CAGGTTTCCCATGGGAATGTAAACTCCTT-G  1096
      | |||||||| || |||| ||||||||| |||||||||  |||| ||| |
seq2  T-AATGGATA-TATTATACCAGGTTTCCAATGGGAATGGTAACTTCTTGG  1097

seq1  GTTG-CAAGTGTCTTTTATC-TTTTGATTTTTATCTT--AGTCACTGAAT  1142
      |||| || ||  |||||||| |||||| ||||| |||  ||| |||||||
seq2  GTTGCCAGGTTGCTTTTATCTTTTTGAATTTTACCTTTAAGT-ACTGAAT  1146

seq1  CCTTT-GCTATCCACAAAAA  1161
      ||||| ||||||| ||||||
seq2  CCTTTGGCTATCC-CAAAAA  1165

seq1: chr11_95294119_95295235
seq2: B6Ng01-165M24.g_70_1196 (reverse)

seq1  CTTGGGA-GCTC-GCTAGCC-TGT-CAACCAAGGGAAACCAGT-GA-CCT  44
      ||||||| |||| ||||||| ||| ||||||||| ||  |||| || |||
seq2  CTTGGGAGGCTCGGCTAGCCTTGTCCAACCAAGGAAACACAGTAGACCCT  50

seq1  TCTG-AGTCA-GTGACAGACACAGTCTGAAGGAATGAAGCAAAGAACGAC  92
      |||| ||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TCTGAAGTCAGGTGACAGACACAGTCTGAGGGAATGAAGCAAAGAACGAC  100

seq1  AGA-CAAAAAGACCTGAC-AGCCTCATCTGGCTTCTACA-TATGCACACA  139
      ||| |||| ||||||||| |||||||||||||||||||| ||||||||||
seq2  AGACCAAAGAGACCTGACAAGCCTCATCTGGCTTCTACATTATGCACACA  150

seq1  CAGAATCATACACACAGAC-AAACAAA-CCACAAACAAAGGAATCATAGG  187
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  CAGAATCATACACACAGACAAAACAAACCCACAAACAAAGGAATCATAGG  200

seq1  CATCTAAGGCATGGATACATAATCTGTTAGTGTTTGTTTA-GTTAGGGTG  236
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  CATCTAAGGCATGGATACATAATCTGTTAGTGTTTGTTTAGGTAAGGGTG  250

seq1  GTTTTGTTTGCTTTTGTTTTATATTTTTGAGATAGGGTCTCATGTAGTGT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTGCTTTTGTTTTATATTTTTGAGATAGGGTCTCATGTAGTGT  300

seq1  GAACTGGCTTGGCACTTGTT-GGGTAATAGGAATTATTTGAACTTCTGAT  335
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAACTGGCTTGGCACTTGTTGGGGTAATAGGAATTATTTGAACTTCTGAT  350

seq1  TCTTTTGTCTCTAACTCTCAAGTTCTGTGAGTACAGGCATGTGCAGTCAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTCTCTAACTCTCAAGTTCTGTGAGTACAGGCATGTGCAGTCAT  400

seq1  GTCTGGTTTATATGGTTCTCAGAGTAGAACACAGGGCTTTGTGCATGCTA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTTATATGGTTCTCAGAGTAGAACACAGGGCTTTGTGCATGCTA  450

seq1  CCAAATACTTGACTACCTGAGTTATATCCCTAGTCCCTGAATACATAACT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATACTTGACTACCTGAGTTATATCCCTAGTCCCTGAATACATAACT  500

seq1  CTATTAATT-AAACATTCTTCCCTACTTTGATCTGTAAATTATCCTGTCA  534
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATTAAAACATTCTTCCCTACTTTGATCTGTAAATTATCCTGTCA  550

seq1  TAGATATCCTTGTGCATAAATCTTTATAGGCTGATTTCCTAGGATTGATT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATCCTTGTGCATAAATCTTTATAGGCTGATTTCCTAGGATTGATT  600

seq1  TCTCAAATGACATTACTTTGTGAAAGCCTGTGCAGTGGGACCCATGCTAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATGACATTACTTTGTGAAAGCCTGTGCAGTGGGACCCATGCTAT  650

seq1  GGCTCAGTAGATAGAGGTGCCTACTGCCTAGGCTCACTGCCGAGGCATCT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTAGATAGAGGTGCCTACTGCCTAGGCTCACTGCCGAGGCATCT  700

seq1  CTTCATCCCCAGATTTTAATCTTTTCCTAAGCACTTATCCTGGGTGTCAT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCCCAGATTTTAATCTTTTCCTAAGCACTTATCCTGGGTGTCAT  750

seq1  TATCTCTATCAAAAGGATATGTGTGAGACTGGAAAGATGGCTCAGCAGTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATCAAAAGGATATGTGTGAGACTGGAAAGATGGCTCAGCAGTT  800

seq1  AAGAACATTTGCTCCTCTTGCAAAGGCCTGGGTTTTCATTCCCAGCACCC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATTTGCTCCTCTTGCAAAGGCCTGGGTTTTCATTCCCAGCACCC  850

seq1  ACATAGCGACTTACAGCTGTTCATAACTTTAATTCCAGGGGCACTTGCAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCGACTTACAGCTGTTCATAACTTTAATTCCAGGGGCACTTGCAC  900

seq1  CGTCTTCTGCTCCCCTGGTACCTAGCTTAATGTGGTGCATATATATATAT  934
      ||||||||||||||||||||||||||||||||||||||      ||||||
seq2  CGTCTTCTGCTCCCCTGGTACCTAGCTTAATGTGGTGC------ATATAT  944

seq1  ATATATATATATATATATATATACATGCAGACAATCACTCAGATGCATAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATACATGCAGACAATCACTCAGATGCATAA  994

seq1  AATCTTTAAAAAGGGGGTATGTTAAGATTTGAGTGAGACATTATAGAAGA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAAAAAGGGGGTATGTTAAGATTTGAGTGAGACATTATAGAAGA  1044

seq1  ATTACAGTTCTGGGCATTCTAGTTAATTGTCAGCCTCTGAGTTCTAAGTA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTTCTGGGCATTCTAGTTAATTGTCAGCCTCTGAGTTCTAAGTA  1094

seq1  GCACTTAGTTTACTGTAAGTATGATTGGAATTC  1117
      |||||||||||||||||||||||||||||||||
seq2  GCACTTAGTTTACTGTAAGTATGATTGGAATTC  1127