BAC Information

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BAC

Clone NameB6Ng01-165N17
Chromosome11 (Build37)
Map Location 67,752,359 - 67,916,050
singlet/doubletdoublet
Overlap geneWdr16, Stx8
Upstream gene9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43
Downstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165N17.bB6Ng01-165N17.g
ACCDH957800DH957801
length7931,038
definitionDH957800|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N17, 5' end.DH957801|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,915,261 - 67,916,050)(67,752,359 - 67,753,389)
sequence
gaattccccatctcctttgagactgtgtgtataatcatgaccacaatagg
ttggttcaaggacatttccaaagaaagcagggaatgggcactagaacttg
gacaagcaaagatcatggtgatgttgtttgtggcccagccaccacagagc
tggggactgtgggagtgctggcaaaagcaatgcccaagcataaagcattt
gggctgctgtgtagtctctttcaatcatggaagtgagatggggcagcaat
gggaggacttaaagaatttctaatgaaaagcagagcaggaaggagaaagc
atgcgctggagagaataccaacagtcctttcttaaagagatcacaggagc
cgggcatggtggcgcacgcctttaatcccagcactcaggaagcagaggca
ggcggatttctgagttcgaggccagcctggtctacagagtgagttccagg
agagccagggctacacagagaaacactgtcttgaaaacaaaaaaacaaaa
agcaatcacagggctaggagggacccagagctagtcataatgcaatgaaa
tactattctgagattttctgaggtcactttcctacagcaaagcccagagc
actaaaacggcaaagaggtatcaggatccaggcccagaacactccactgt
gggctcactgtccaggtccccttgcatttttgacacagtgccctgttgcc
atggaaggtagaagcaataagccttaacaacatccccatggtgtcaagac
tgcaagcttgcacagttaaagagctgggggtacattagctgcc
gaattcctttgcgtgctgcatcaaatttctaccttctaacggtcctcttc
ttctacttacaatggaaagacaatgtcctggacagcttcaaagtgacaag
ttgcaatgagagtctctttgaaatcggtgaagttaacgcggtagatgtgc
gattcttccgtccccacaaaaaactggtgtccttctccccggagcgtgat
agaggtgataccaccttgcagctggactttccttcgggggtaatgcacaa
aagtgaagcagagtcattcaaccagcaagcatttgcccacctgattgcag
agaaaacaaaaccagtcacgtggatgggccctcgaggaggtgacacagct
gagaaggcctgagttagtcacagtgttgcacacccatgatcaggagggag
ggggttgacagtgtgggttaaagtagtcaaggaaggtctgctagggagat
gtggtctgaaacagtttgtaccttaaaaattagggggaatgcctcatatt
tccagtatcatgtcctagtatagtgtacgcaaagtcatgtacttatttat
caaaagggcagtgtgcctctgggttaaactttagttttggtttaacatga
aatttttcatggaaaagaaaccactagctctgtcattccagctatgtaca
cacttagtaacaagatgaaaattttttaaccatatatgaatttctttcaa
acagggcctcactgtgtagccacaaatggcttggaactctgtagaacagg
ctggggcaaatcccacagagatccacctgcctctgcctcccgagcgctgg
gattaaaggcatgagccaccatgctcacaatatggttcttcttgatatcg
ttcagttgttggatgtaagtggaactctcttctagtggggtctcccacct
accccagctctgtggtggtgtagaacttacttgataggcttgtagctggg
gctttacagaagatcacaagccagtttcggagccgaccacaaaccaccca
tcttagggacctggagagccgacacttccctatcgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_67915261_67916050
seq2: B6Ng01-165N17.b_46_838 (reverse)

seq1  GGCAGCT-ATGTACCCCCAGCTCTTTCACTGTGCAAGCTTGCAGTCTTGA  49
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  GGCAGCTAATGTACCCCCAGCTCTTTAACTGTGCAAGCTTGCAGTCTTGA  50

seq1  CACCATGGGGATGTTGTTAAGGCTTATTGCTTCTACCTTCCATGGCAACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGGGATGTTGTTAAGGCTTATTGCTTCTACCTTCCATGGCAACA  100

seq1  GGGCACTGTGTC-AAAATGCAAGGGGACCTGGACAGTGAGCCCACAGTGG  148
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGTGTCAAAAATGCAAGGGGACCTGGACAGTGAGCCCACAGTGG  150

seq1  AGTGTTCTGGGCCTGGATCCTGATACCTCTTTGCCGTTTTAGTGCTCTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTGGGCCTGGATCCTGATACCTCTTTGCCGTTTTAGTGCTCTGG  200

seq1  GC-TTGCTGTAGGAAAGTGACCTCAGAAAATCTCAGAATAGTATTTCATT  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTGTAGGAAAGTGACCTCAGAAAATCTCAGAATAGTATTTCATT  250

seq1  GCATTATGACTAGCTCTGGGTCCCTCCTAGCCCTGTGATTGCTTTTTGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATGACTAGCTCTGGGTCCCTCCTAGCCCTGTGATTGCTTTTTGTT  300

seq1  TTTTTGTTTTCAAGACAGTGTTTCTCTGTGTAGCCCTGGCTCTCCTGGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTCAAGACAGTGTTTCTCTGTGTAGCCCTGGCTCTCCTGGAA  350

seq1  CTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCT  400

seq1  GCTTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCTCCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCTCCTG  450

seq1  TGATCTCTTTAAGAAAGGACTGTTGGTATTCTCTCCAGCGCATGCTTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTTTAAGAAAGGACTGTTGGTATTCTCTCCAGCGCATGCTTTCT  500

seq1  CCTTCCTGCTCTGCTTTTCATTAGAAATTCTTTAAGTCCTCCCATTGCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGCTCTGCTTTTCATTAGAAATTCTTTAAGTCCTCCCATTGCTG  550

seq1  CCCCATCTCACTTCCATGATTGAAAGAGACTACACAGCAGCCCAAATGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTCACTTCCATGATTGAAAGAGACTACACAGCAGCCCAAATGCT  600

seq1  TTATGCTTGGGCATTGCTTTTGCCAGCACTCCCACAGTCCCCAGCTCTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTGGGCATTGCTTTTGCCAGCACTCCCACAGTCCCCAGCTCTGT  650

seq1  GGTGGCTGGGCCACAAACAACATCACCATGATCTTTGCTTGTCCAAGTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGGGCCACAAACAACATCACCATGATCTTTGCTTGTCCAAGTTC  700

seq1  TAGTGCCCATTCCCTGCTTTCTTTGGAAATGTCCTTGAACCAACCTATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCCATTCCCTGCTTTCTTTGGAAATGTCCTTGAACCAACCTATTG  750

seq1  TGGTCATGATTATACACACAGTCTCAAAGGAGATGGGGAATTC  790
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGATTATACACACAGTCTCAAAGGAGATGGGGAATTC  793

seq1: chr11_67752359_67753389
seq2: B6Ng01-165N17.g_70_1107

seq1  GAATTCCTTTGCGTGCTGCATCAAATTTCTACCTTCTAACGGTCCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGCGTGCTGCATCAAATTTCTACCTTCTAACGGTCCTCTTC  50

seq1  TTCTACTTACAATGGAAAGACAATGTCCTGGACAGCTTCAAAGTGACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTACAATGGAAAGACAATGTCCTGGACAGCTTCAAAGTGACAAG  100

seq1  TTGCAATGAGAGTCTCTTTGAAATCGGTGAAGTTAACGCGGTAGATGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGAGAGTCTCTTTGAAATCGGTGAAGTTAACGCGGTAGATGTGC  150

seq1  GATTCTTCCGTCCCCACAAAAAACTGGTGTCCTTCTCCCCGGAGCGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCCGTCCCCACAAAAAACTGGTGTCCTTCTCCCCGGAGCGTGAT  200

seq1  AGAGGTGATACCACCTTGCAGCTGGACTTTCCTTCGGGGGTAATGCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGATACCACCTTGCAGCTGGACTTTCCTTCGGGGGTAATGCACAA  250

seq1  AAGTGAAGCAGAGTCATTCAACCAGCAAGCATTTGCCCACCTGATTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGCAGAGTCATTCAACCAGCAAGCATTTGCCCACCTGATTGCAG  300

seq1  AGAAAACAAAACCAGTCACGTGGATGGGCCCTCGAGGAGGTGACACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAAACCAGTCACGTGGATGGGCCCTCGAGGAGGTGACACAGCT  350

seq1  GAGAAGGCCTGAGTTAGTCACAGTGTTGCACACCCATGATCAGGAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCCTGAGTTAGTCACAGTGTTGCACACCCATGATCAGGAGGGAG  400

seq1  GGGGTTGACAGTGTGGGTTAAAGTAGTCAAGGAAGGTCTGCTAGGGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGACAGTGTGGGTTAAAGTAGTCAAGGAAGGTCTGCTAGGGAGAT  450

seq1  GTGGTCTGAAACAGTTTGTACCTTAAAAATTAGGGGGAATGCCTCATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTGAAACAGTTTGTACCTTAAAAATTAGGGGGAATGCCTCATATT  500

seq1  TCCAGTATCATGTCCTAGTATAGTGTACGCAAAGTCATGTACTTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATCATGTCCTAGTATAGTGTACGCAAAGTCATGTACTTATTTAT  550

seq1  CAAAAGGGCAGTGTGCCTCTGGGTTAAACTTTAG-TTTGGTTTAACATGA  599
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAAAGGGCAGTGTGCCTCTGGGTTAAACTTTAGTTTTGGTTTAACATGA  600

seq1  AATTTTTCATGGAAAAGAAACCACTAGCTCTGTCATTCCAGCTATGTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCATGGAAAAGAAACCACTAGCTCTGTCATTCCAGCTATGTACA  650

seq1  CACTTAGTAACAAGATGAAAA-TTTTTAACCAGATATGAATTTCTTTCAA  698
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  CACTTAGTAACAAGATGAAAATTTTTTAACCATATATGAATTTCTTTCAA  700

seq1  ACAGGGCCTCACTGTGTAGCCACAAATGGCTTGGAACTCTGTAGAACAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCCTCACTGTGTAGCCACAAATGGCTTGGAACTCTGTAGAACAGG  750

seq1  CT-GGGCAAATCCCACAGAGATCCACCTGCCTCTGCCTCCCGAGCGCTGG  797
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCAAATCCCACAGAGATCCACCTGCCTCTGCCTCCCGAGCGCTGG  800

seq1  GATTAAAGGCATGAGCCACCATGCTCACAATATGGTTCTTC-TGATATCG  846
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GATTAAAGGCATGAGCCACCATGCTCACAATATGGTTCTTCTTGATATCG  850

seq1  TTCAGTTGTTGGATGTAAGTGGACCTCTC-TCTAGT-GGGTCT-CCACCT  893
      ||||||||||||||||||||||| ||||| |||||| |||||| ||||||
seq2  TTCAGTTGTTGGATGTAAGTGGAACTCTCTTCTAGTGGGGTCTCCCACCT  900

seq1  ACCCCAGCTCTGTGGT-GTGTAGAACTTACTTGATAGGCTTGTAGCTGGG  942
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCCCAGCTCTGTGGTGGTGTAGAACTTACTTGATAGGCTTGTAGCTGGG  950

seq1  GCTTTTACAGAAGATCAGCAAGCCAGCTCCAGAGCCGACCAACAAACCAC  992
      || |||||||||||||| |||||||| | | ||||||||| |||||||||
seq2  GC-TTTACAGAAGATCA-CAAGCCAGTTTCGGAGCCGACC-ACAAACCAC  997

seq1  CCATCTTCAGGCACCT-GAGAGCCGACAC-TCCCTA-CGGGG  1031
      ||||||| ||| |||| |||||||||||| |||||| |||||
seq2  CCATCTT-AGGGACCTGGAGAGCCGACACTTCCCTATCGGGG  1038