BAC Information

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BAC

Clone NameB6Ng01-166L15
Chromosome11 (Build37)
Map Location 34,703,924 - 34,752,968
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166L15.bB6Ng01-166L15.g
ACCDH958420DH958421
length1,095976
definitionDH958420|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L15, 5' end.DH958421|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,703,924 - 34,705,022)(34,751,992 - 34,752,968)
sequence
gaattcatggctctcaatgtccctttctgtccaacaatgaccccatgagt
aggttttatgcgggttgggggaaaatggaatagacaatctcagcacagac
tacctcagctgtgtgccttgagatgctgcctggccagcgcagcccactag
ggaagttcctatccagcagggcaggtagaaggccaagcactaggccctag
cacccaggggaattcagtgatggaagacatagacctttaggctgtgactc
ccagccatgcaccacccctcttaacttccatttattggatctttcccaca
ttttcacagctgctaaatatatctcctgaattaacatatcttaatttaat
aattgttgtatccatgagaaagggagcctcatagtgaggaaacccaagca
gactcaatcattagagccattacagtcatgcagttagtgagcaacagagc
cacattttccctgaggaatctgacactgacgcccatcaaccctgcccatt
ggcctgttaccgcaacttcacattcacccattgaatttactattctaggt
tcatgtctggctgggtaagatagcatactgcctggattttaataagcact
gcccaagtgggtccatagcttccatctctgaagtaggctgtgttgtcgtt
gttgttattgctgttgctgttgttgcactacactcttctcactcttctct
agacagtcttaatttgctaaggttatcaaagcattagcagatgggatggc
tttaacaacaacacatatctttttttttaacacccacaaaggctggaaag
gccacgatcaaaggtttggtttctttagatgcctttctccgtgccttgca
gactgtcatgttccccactgggcccacatatggtttctttagatgcacac
atacctcacatacctggcatctccccagacaccctaatctccttttctta
taaataaaccatccgtaggggatttcactcatgatagtgtacttgtgtag
cagtgcagtcctgggttcagtcatcagtgtcgggtggggtggggaggcca
caccagtcaaattggataggatagaccccatggctcattttcacc
gaattcacctctggcctccacacacatggacttgcagacaagagtactga
tacacacccataccttctctctctctctctctctctctctctctctctct
ctctctctcatcacaaatactttcctcagcagctggtaagctggtaagct
gcttctccttctcctcccactcagctgaatgccagttgtccctgcatccc
aacccagcctctcaaaatggcttcagtttccaagagacagcttgcttcta
aatgccatccagtcctgttgccagaggggggagtacagggatttgtccag
tgggagggacagaaaacaacagccagagccaccatgccaggcaagctctg
tgaacgtggatgtctggaagctgattctgtggggaggtgggtgtggcgag
tgaaaatcaccagcttgttgggggcacatttcatgatacaaaggggtctt
cggtattattctacggcctaatttaccttcctgagagttaagtatatgaa
ataaagcatgccttttaagttacctgtgtgcagtttagaagcacagtgtc
ctgtctcccctagagggctggattcagaatgctctttcacacattaccaa
atccgtgggccctcaagtccctcatgtgaagtaccacagtatttgtacaa
cctcggtgcatcctcccatacattttaacatcaccgctagacaaccgatg
atacttaatacagtgtggccgctaagctgatagctgtgctgcagtgtttt
agagaatattgggtgagaaggaaaatgcactcgttactcaataaagagaa
tctgtctttttacgtcttaaaactaaatgtgttcaatgcatggatgcacc
ttgagaattaactgtgcccgattctgctctaaattttatttgattcaaat
ttcagagtaccaagggatagcatcaatgatcctagagtctctgaattccc
ttttcttaggattggtctttgtctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_34703924_34705022
seq2: B6Ng01-166L15.b_44_1138

seq1  GAATTCATGGCTCTCAATGTCCCTTTCTGTCCAACAATGACCCCATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCTCTCAATGTCCCTTTCTGTCCAACAATGACCCCATGAGT  50

seq1  AGGTTTTATGCGGGTTGGGGGAAAATGGAATAGACAATCTCAGCACAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTATGCGGGTTGGGGGAAAATGGAATAGACAATCTCAGCACAGAC  100

seq1  TACCTCAGCTGTGTGCCTTGAGATGCTGCCTGGCCAGCGCAGCCCACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGCTGTGTGCCTTGAGATGCTGCCTGGCCAGCGCAGCCCACTAG  150

seq1  GGAAGTTCCTATCCAGCAGGGCAGGTAGAAGGCCAAGCACTAGGCCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCCTATCCAGCAGGGCAGGTAGAAGGCCAAGCACTAGGCCCTAG  200

seq1  CACCCAGGGGAATTCAGTGATGGAAGACATAGACCTTTAGGCTGTGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGGGAATTCAGTGATGGAAGACATAGACCTTTAGGCTGTGACTC  250

seq1  CCAGCCATGCACCACCCCTCTTAACTTCCATTTATTGGATCTTTCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATGCACCACCCCTCTTAACTTCCATTTATTGGATCTTTCCCACA  300

seq1  TTTTCACAGCTGCTAAATATATCTCCTGAATTAACATATCTTAATTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGCTGCTAAATATATCTCCTGAATTAACATATCTTAATTTAAT  350

seq1  AATTGTTGTATCCATGAGAAAGGGAGCCTCATAGTGAGGAAACCCAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGTATCCATGAGAAAGGGAGCCTCATAGTGAGGAAACCCAAGCA  400

seq1  GACTCAATCATTAGAGCCATTACAGTCATGCAGTTAGTGAGCAACAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAATCATTAGAGCCATTACAGTCATGCAGTTAGTGAGCAACAGAGC  450

seq1  CACATTTTCCCTGAGGAATCTGACACTGACGCCCATCAACCCTGCCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTCCCTGAGGAATCTGACACTGACGCCCATCAACCCTGCCCATT  500

seq1  GGCCTGTTACCGCAACTTCACATTCACCCATTGAATTTACTATTCTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTTACCGCAACTTCACATTCACCCATTGAATTTACTATTCTAGGT  550

seq1  TCATGTCTGGCTGGGTAAGATAGCATACTGCCTGGATTTTAATAAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTGGCTGGGTAAGATAGCATACTGCCTGGATTTTAATAAGCACT  600

seq1  GCCCAAGTGGGTCCATAGCTTCCATCTCTGAAGTAGGCTGTGTTGTCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGTGGGTCCATAGCTTCCATCTCTGAAGTAGGCTGTGTTGTCGTT  650

seq1  GTTGTTATTGCTGTTGCTGTTGTTGCACTACACTCTTCTCACTCTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTGCTGTTGCTGTTGTTGCACTACACTCTTCTCACTCTTCTCT  700

seq1  AGACAGTCTTAATTTGCTAAGGTTATCAAAGCATTAGCAGATGGGATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCTTAATTTGCTAAGGTTATCAAAGCATTAGCAGATGGGATGGC  750

seq1  TTTAACAACAACACATATCTTTTTTTTTAACACCCACAAAGGCTGG-AAG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTAACAACAACACATATCTTTTTTTTTAACACCCACAAAGGCTGGAAAG  800

seq1  GCCACGATC-AAGGTTTGGTTTCTTTAGATGCCTTTCTCCGTGCCTTGCA  848
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGATCAAAGGTTTGGTTTCTTTAGATGCCTTTCTCCGTGCCTTGCA  850

seq1  GACTGTCATGTTCCCCACTGGGCCCACATATGGTTTCTTTAGATGCACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCATGTTCCCCACTGGGCCCACATATGGTTTCTTTAGATGCACAC  900

seq1  ATACCTCACATACCTGGCATCTCCCCAGACACCCTAATCTCCTTTTCTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCACATACCTGGCATCTCCCCAGACACCCTAATCTCCTTTTCTTA  950

seq1  TAAATAAACCATCCGTAGGGGATTTCACTCAATGATAGTGTACTTGTGTA  998
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAATAAACCATCCGTAGGGGATTTCACTC-ATGATAGTGTACTTGTGTA  999

seq1  GCAAGTGCAAGGCCCTGGGTTCAGTCATCAGTGTCGGGGTGGGT-GGGAG  1047
      || ||||||  | |||||||||||||||||||||||||  |||| |||||
seq2  GC-AGTGCA--GTCCTGGGTTCAGTCATCAGTGTCGGGTGGGGTGGGGAG  1046

seq1  GCCACACCAGTCAAATTGGATTAGGATAGACCCCAATGGCTTCATTTTCA  1097
      |||||||||||||||||||| ||||||||||||| ||||| |||||||||
seq2  GCCACACCAGTCAAATTGGA-TAGGATAGACCCC-ATGGC-TCATTTTCA  1093

seq1  CC  1099
      ||
seq2  CC  1095

seq1: chr11_34751992_34752968
seq2: B6Ng01-166L15.g_67_1042 (reverse)

seq1  ACAGACAAAAGACCAAATCAAAGAAAGGGGAATTCAGAGAACTCTGAGAT  50
      |||||| |||||||||  | |||||| |||||||||||| |||||  |||
seq2  ACAGAC-AAAGACCAATCCTAAGAAAAGGGAATTCAGAG-ACTCTAGGAT  48

seq1  CATTGATTGCTATCCCTTTGGTACTCTGAAATTTTGAATACAAATAAAAT  100
      |||||| ||||||||| |||||||||||||| ||||||| ||||||||||
seq2  CATTGA-TGCTATCCC-TTGGTACTCTGAAA-TTTGAAT-CAAATAAAAT  94

seq1  TTAGAGCAGAATCGGGCACAGTTAATTCAC-AGGTGCATCCATGCATTGA  149
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  TTAGAGCAGAATCGGGCACAGTTAATTCTCAAGGTGCATCCATGCATTGA  144

seq1  ACACATTTAGTTTTAAGACGTTAAAAGACAGATTCTCTTTATTGAGT-AC  198
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  ACACATTTAGTTTTAAGACGTAAAAAGACAGATTCTCTTTATTGAGTAAC  194

seq1  GAGTGCATTTTCCTTCTCA-CCAATATTCTCT-AAACACTGCAGCACAGC  246
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  GAGTGCATTTTCCTTCTCACCCAATATTCTCTAAAACACTGCAGCACAGC  244

seq1  TATCAGCTTAGCGGCCACACTGTATTAAGTATCATCGGTTGTCTAGCGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTTAGCGGCCACACTGTATTAAGTATCATCGGTTGTCTAGCGGT  294

seq1  GATGTT-AAATGTATGGGAGGATGCACCGAGGTTGTACAAATACTGTGGT  345
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAAAATGTATGGGAGGATGCACCGAGGTTGTACAAATACTGTGGT  344

seq1  ACTTCACATGAGGGACTTGAGGGCCCACGGATTTGGTAATGTGTGAAAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATGAGGGACTTGAGGGCCCACGGATTTGGTAATGTGTGAAAGA  394

seq1  GCATTCTGAATCCAGCCCTCTAGGGGAGACAGGACACTGTGCTTCTAAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGAATCCAGCCCTCTAGGGGAGACAGGACACTGTGCTTCTAAAC  444

seq1  TGCACACAGGTAACTTAAAAGGCATGCTTTATTTCATATACTTAACTCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAGGTAACTTAAAAGGCATGCTTTATTTCATATACTTAACTCTC  494

seq1  AGGAAGGTAAATTAGGCCGTAGAATAATACCGAAGACCCCTTTGTATCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTAAATTAGGCCGTAGAATAATACCGAAGACCCCTTTGTATCAT  544

seq1  GAAATGTGCCCCCAACAAGCTGGTGATTTTCACTCGCCACACCCACCTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGCCCCCAACAAGCTGGTGATTTTCACTCGCCACACCCACCTCC  594

seq1  CCACAGAATCAGCTTCCAGACATCCACGTTCACAGAGCTTGCCTGGCATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAATCAGCTTCCAGACATCCACGTTCACAGAGCTTGCCTGGCATG  644

seq1  GTGGCTCTGGCTGTTGTTTTCTGTCCCTCCCACTGGACAAATCCCTGTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTGGCTGTTGTTTTCTGTCCCTCCCACTGGACAAATCCCTGTAC  694

seq1  TCCCCCCTCTGGCAACAGGACTGGATGGCATTTAGAAGCAAGCTGTCTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCTGGCAACAGGACTGGATGGCATTTAGAAGCAAGCTGTCTCT  744

seq1  TGGAAACTGAAGCCATTTTGAGAGGCTGGGTTGGGATGCAGGGACAACTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTGAAGCCATTTTGAGAGGCTGGGTTGGGATGCAGGGACAACTG  794

seq1  GCATTCAGCTGAGTGGGAGGAGAAGGAGAAGCAGCTTACCAGCTTACCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGCTGAGTGGGAGGAGAAGGAGAAGCAGCTTACCAGCTTACCAG  844

seq1  CTGCTGAGGAAAGTATTTGTGATGAGAGAGAGAGAGAGAGAGAGAGAGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGGAAAGTATTTGTGATGAGAGAGAGAGAGAGAGAGAGAGAGAG  894

seq1  AGAGAGAGAGAGAGAGAAGGTATGGGTGTGTATCAGTACTCTTGTCTGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAAGGTATGGGTGTGTATCAGTACTCTTGTCTGCA  944

seq1  AGTCCATGTGTGTGGAGGCCAGAGGTGAATTC  977
      ||||||||||||||||||||||||||||||||
seq2  AGTCCATGTGTGTGGAGGCCAGAGGTGAATTC  976