BAC Information

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BAC

Clone NameB6Ng01-166N06
Chromosome11 (Build37)
Map Location 85,561,448 - 85,754,064
singlet/doubletdoublet
Overlap geneBcas3, Tbx2, Tbx4
Upstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneLOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166N06.bB6Ng01-166N06.g
ACCDH958494DH958495
length1,1101,132
definitionDH958494|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N06, 5' end.DH958495|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,752,946 - 85,754,064)(85,561,448 - 85,562,593)
sequence
gaattcactctgtagaccaggctggcctcaaactcagagatctgcctgct
tctgcctcttgagtgctggaattaaaggcattcaccaggactacccttca
aaaccctgccttttaaaaataaaataaaataatattccctctagcaactc
tctggccactgaaaccattaaagactttcaaagcaccagcttacttaaaa
acaaattgcttatttatttatctctctgtttatttatctctctgtgttcc
ctcaaactgtcctggacccctcaatacgtagtctatgttgaccctggatt
gatgctcctgctgccttgactttttgagtactggaattacatcagtgcca
ccagacccaacttggaagaagtcttttcttcctccttttgtgtcctcaca
tacaaggcaaatgcttagcatgcggctgaacccattcctccaagggcctt
tgaaaatcccagcataacaaggagctagtgaacgtttagctatggcaggg
tgcctgcgggtgtgagagctgagggacacacacacacacacacacacaca
cacacacacacacacacacacatatctcttcgcagttaatgcaccctcag
acgacctgggtctcgcagtcagccacctcagctcaaggccactgaaagaa
taccatctcctcaaaggtctcaaaggtggcattgtcaacttaggtcagca
ggtgcccatcgcagacaggagggacatccaggttggatgcccacccaggg
ccaccaacatgatctgtttctggggagaacattccagccaggaaagagac
tcttaggaacaacgccatcagtccatggacttcagactgcacagaggaca
gtccaacctcagagtcccctttggataattccccagagaaatgcaaacct
accagctgctgctgactgtgtgtttgctccgtggcctccgaaatcccttc
cgaaagaataaagacaaagtattggatgaacatgaactgactagggagaa
acacgagagagatcccgtaaagtcagtccttgtgaaccctgatatgactt
ttgttgttgttttcgagacaggtctctctggtgtagcctgcctgtctgac
tcactctgta
gaattccattcaggcaccccttagaggcctgtggtcccgggttagggatt
tctgaatggaattaaagttgagtagatgttttcgcagaaggaagtcggtc
atgcctctgccatgtaaaacacctgcacctttgcattcctctccgttcag
catatttttatataaaggagctttaggtagtaagtcagagaagtcaagtc
ttctctgggattagatgagcagctacgtctgcatgtatgctctatgccac
aacaatgctatcttgcttaaagaagtccagttctgccatctaacatagag
aaaatttgagttttgggactggcgagctggctcagtcaccaaggtgcttg
ccacacaatcatgagaacctgagcttgttcctataatcccagcactgtgg
gagcaaagtcaggcatccccaaagctcactggccagtcagtctcagatcc
attcttaaaaataggattgagaaagatatccaacatgaccccctggcttt
ttcacccaagtacacatgtaccaacatacatgtgcatgcacaggaacaca
tataacacacaaagaatagtcttgagattcttctttacacaaatagttat
taacaacaatcccctgttcctcccatgccaggagacaaggacagaatttt
cccaggctgctctttgctctctgatatagaacttggtttttctcatcttg
ttttttaatgtcatatcgagatgtaccacagaacctggctttccatttat
gtggtggctatgatgtctttttttctccaaggatgtttctagtaatcacc
aataactcatgtccacctaatgtgaaaattggtaccatctaatagaacct
tcaacatgctaaccacaccatttcactaataaaatgcaatttgtctgctt
tcataatgtgattgttttagactctttaaaattaattgacatgtgtacat
atatacagtatatcttgattctgtccatccacatctcctttcctccctgg
gtcttctcccatctttgtgtcctttgtttcgctgtatctactgggtcatt
cagggctccctgcgagcatggctaccttaccccccacctcaccacaggcc
tccaggtttcagggtgtggagccaccgtgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_85752946_85754064
seq2: B6Ng01-166N06.b_45_1154 (reverse)

seq1  TACAGAGTGAGTTCCAGGACAGCCAGGGCTACA-CAGAGAGACCCTGTCT  49
      ||||||||||||  || ||||| || ||||||| |||||||| |||||||
seq2  TACAGAGTGAGT--CA-GACAGGCA-GGCTACACCAGAGAGA-CCTGTCT  45

seq1  CGAAAAACAAACAAACAAAAGTCATATCCAGGGTTCACAAGGACTGACTT  99
      || |||||||   |||||||||||||| ||||||||||||||||||||||
seq2  CG-AAAACAA--CAACAAAAGTCATAT-CAGGGTTCACAAGGACTGACTT  91

seq1  TAACGGGATCCTCTCTCGTG-TTCTCCCTAGTCAGTTCATGTTCATCCAA  148
      | ||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  T-ACGGGAT-CTCTCTCGTGTTTCTCCCTAGTCAGTTCATGTTCATCCAA  139

seq1  TACTTTGTCTTTATTCTTTTCGGAGGGATTTCGGAGGCCACGGAGCAAAC  198
      |||||||||||||||||||  | |||||||||||||||||||||||||||
seq2  TACTTTGTCTTTATTCTTTCGGAAGGGATTTCGGAGGCCACGGAGCAAAC  189

seq1  ACACAGTCAGCAGCAGCTGGTAGGTTTGCATTTCTCTGGGGAATTATCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCAGCAGCAGCTGGTAGGTTTGCATTTCTCTGGGGAATTATCCA  239

seq1  AAGGGGACTCTGAGGTTGGACTGTCCTCTGTGCAGTCTGAAGTCCATGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACTCTGAGGTTGGACTGTCCTCTGTGCAGTCTGAAGTCCATGGA  289

seq1  CTGATGGCGTTGTTCCTAAGAGTCTCTTTCCTGGCTGGAATGTTCTCCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGCGTTGTTCCTAAGAGTCTCTTTCCTGGCTGGAATGTTCTCCCC  339

seq1  AGAAACAGATCATGTTGGTGGCCCTGGGTGGGCATCCAACCTGGATGTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGATCATGTTGGTGGCCCTGGGTGGGCATCCAACCTGGATGTCC  389

seq1  CTCCTGTCTGCGATGGGCACCTGCTGACCTAAGTTGACAATGCCACCTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCTGCGATGGGCACCTGCTGACCTAAGTTGACAATGCCACCTTT  439

seq1  GAGACCTTTGAGGAGATGGTATTCTTTCAGTGGCCTTGAGCTGAGGTGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTTGAGGAGATGGTATTCTTTCAGTGGCCTTGAGCTGAGGTGGC  489

seq1  TGACTGCGAGACCCAGGTCGTCTGAGGGTGCATTAACTGCGAAGAGATAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCGAGACCCAGGTCGTCTGAGGGTGCATTAACTGCGAAGAGATAT  539

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCT  589

seq1  CAGCTCTCACACCCGCAGGCACCCTGCCATAGCTAAACGTTCACTAGCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCACACCCGCAGGCACCCTGCCATAGCTAAACGTTCACTAGCTC  639

seq1  CTTGTTATGCTGGGATTTTCAAAGGCCCTTGGAGGAATGGGTTCAGCCGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATGCTGGGATTTTCAAAGGCCCTTGGAGGAATGGGTTCAGCCGC  689

seq1  ATGCTAAGCATTTGCCTTGTATGTGAGGACACAAAAGGAGGAAGAAAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGCATTTGCCTTGTATGTGAGGACACAAAAGGAGGAAGAAAAGA  739

seq1  CTTCTTCCAAGTTGGGTCTGGTGGCACTGATGTAATTCCAGTACTCAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCAAGTTGGGTCTGGTGGCACTGATGTAATTCCAGTACTCAAAA  789

seq1  AGTCAAGGCAGCAGGAGCATCAATCCAGGGTCAACATAGACTACGTATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGCAGCAGGAGCATCAATCCAGGGTCAACATAGACTACGTATTG  839

seq1  AGGGGTCCAGGACAGTTTGAGGGAACACAGAGAGATAAATAAACAGAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCCAGGACAGTTTGAGGGAACACAGAGAGATAAATAAACAGAGAG  889

seq1  ATAAATAAATAAGCAATTTGTTTTTAAGTAAGCTGGTGCTTTGAAAGTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAGCAATTTGTTTTTAAGTAAGCTGGTGCTTTGAAAGTCT  939

seq1  TTAATGGTTTCAGTGGCCAGAGAGTTGCTAGAGGGAATATTATTTTATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTTTCAGTGGCCAGAGAGTTGCTAGAGGGAATATTATTTTATTT  989

seq1  TATTTTTAAAAGGCAGGGTTTTGAAGGGTAGTCCTGGTGAATGCCTTTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAAAGGCAGGGTTTTGAAGGGTAGTCCTGGTGAATGCCTTTAA  1039

seq1  TTCCAGCACTCAAGAGGCAGAAGCAGGCAGATCTCTGAGTTTGAGGCCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCACTCAAGAGGCAGAAGCAGGCAGATCTCTGAGTTTGAGGCCAG  1089

seq1  CCTGGTCTACAGAGTGAATTC  1119
      |||||||||||||||||||||
seq2  CCTGGTCTACAGAGTGAATTC  1110

seq1: chr11_85561448_85562593
seq2: B6Ng01-166N06.g_69_1200

seq1  GAATTCCATTCAGGCACCCCTTAGAGGCCTGTGGTCCCGGGTTAGGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCAGGCACCCCTTAGAGGCCTGTGGTCCCGGGTTAGGGATT  50

seq1  TCTGAATGGAATTAAAGTTGAGTAGATGTTTTCGCAGAAGGAAGTCGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGGAATTAAAGTTGAGTAGATGTTTTCGCAGAAGGAAGTCGGTC  100

seq1  ATGCCTCTGCCATGTAAAACACCTGCACCTTTGCATTCCTCTCCGTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTGCCATGTAAAACACCTGCACCTTTGCATTCCTCTCCGTTCAG  150

seq1  CATATTTTTATATAAAGGAGCTTTAGGTAGTAAGTCAGAGAAGTCAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTATATAAAGGAGCTTTAGGTAGTAAGTCAGAGAAGTCAAGTC  200

seq1  TTCTCTGGGATTAGATGAGCAGCTACGTCTGCATGTATGCTCTATGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGATTAGATGAGCAGCTACGTCTGCATGTATGCTCTATGCCAC  250

seq1  AACAATGCTATCTTGCTTAAAGAAGTCCAGTTCTGCCATCTAACATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCTATCTTGCTTAAAGAAGTCCAGTTCTGCCATCTAACATAGAG  300

seq1  AAAATTTGAGTTTTGGGACTGGCGAGCTGGCTCAGTCACCAAGGTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGAGTTTTGGGACTGGCGAGCTGGCTCAGTCACCAAGGTGCTTG  350

seq1  CCACACAATCATGAGAACCTGAGCTTGTTCCTATAATCCCAGCACTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAATCATGAGAACCTGAGCTTGTTCCTATAATCCCAGCACTGTGG  400

seq1  GAGCAAAGTCAGGCATCCCCAAAGCTCACTGGCCAGTCAGTCTCAGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGTCAGGCATCCCCAAAGCTCACTGGCCAGTCAGTCTCAGATCC  450

seq1  ATTCTTAAAAATAGGATTGAGAAAGATATCCAACATGACCCCCTGGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAAAATAGGATTGAGAAAGATATCCAACATGACCCCCTGGCTTT  500

seq1  TTCACCCAAGTACACATGTACCAACATACATGTGCATGCACAGGAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCAAGTACACATGTACCAACATACATGTGCATGCACAGGAACACA  550

seq1  TATAACACACAAAGAATAGTCTTGAGATTCTTCTTTACACAAATAGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACACAAAGAATAGTCTTGAGATTCTTCTTTACACAAATAGTTAT  600

seq1  TAACAACAATCCCCTGTTCCTCCCATGCCAGGAGACAAGGACAGAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAATCCCCTGTTCCTCCCATGCCAGGAGACAAGGACAGAATTTT  650

seq1  CCCAGGCTGCTCTTTGCTCTCTGATATAGAACTTGGTTTTTCTCATCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTGCTCTTTGCTCTCTGATATAGAACTTGGTTTTTCTCATCTTG  700

seq1  TTTTTTAATGTCATATCGAGATGTACCACAGAACCTGGCTTTCCATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATGTCATATCGAGATGTACCACAGAACCTGGCTTTCCATTTAT  750

seq1  GTGGTGGCTATGATGTCTTTTTTTCTCCAAGGATGTTTCTAGTAATCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCTATGATGTCTTTTTTTCTCCAAGGATGTTTCTAGTAATCACC  800

seq1  AATAACTCATGTCCACCTAATGTGAAAATTGGTACCATCTAATAGAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCATGTCCACCTAATGTGAAAATTGGTACCATCTAATAGAACCT  850

seq1  TCAACATGCTAACCACACCATTTCACTAATAAAATGCAAATTTGTCTGCT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAACATGCTAACCACACCATTTCACTAATAAAATGC-AATTTGTCTGCT  899

seq1  TTCATAATGTGATTGTTTTAGACTCTTTAAAAATTAATTGACAATGTTGT  950
      |||||||||||||||||||||||||||| ||||||||||||| ||| |||
seq2  TTCATAATGTGATTGTTTTAGACTCTTT-AAAATTAATTGAC-ATG-TGT  946

seq1  ACATATATACAGTATATCTTGATTCTGTCCATCCCACATCTCCTTTCCCT  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||  
seq2  ACATATATACAGTATATCTTGATTCTGTCCAT-CCACATCTCCTTTCC--  993

seq1  CCCCTGGGTC-TCTCCCATCTTTGTGTCCTTTGTTTCCTCTGTAATCTAC  1049
       ||||||||| ||||||||||||||||||||||||| | |||| ||||||
seq2  TCCCTGGGTCTTCTCCCATCTTTGTGTCCTTTGTTT-CGCTGT-ATCTAC  1041

seq1  TGGGTCCAATCAGTGCTCCCTGCCAGAGCATGGCTACCTCACCCCACCAC  1099
      ||||| || |||| |||||||||  |||||||||||||| ||||| ||||
seq2  TGGGT-CATTCAGGGCTCCCTGC--GAGCATGGCTACCTTACCCC-CCAC  1087

seq1  ACCCACCCAACA-GCCTCCAGGTTTCA-GGTGTGGAGCCACACGTGCTC  1146
       | ||||  ||| |||||||||||||| ||||||||||||| |||||||
seq2  -CTCACC--ACAGGCCTCCAGGTTTCAGGGTGTGGAGCCAC-CGTGCTC  1132