BAC Information

Click to search

BAC

Clone NameB6Ng01-167E03
Chromosome11 (Build37)
Map Location 61,044,236 - 61,162,716
singlet/doubletdoublet
Overlap geneAldh3a2, 4933429E10Rik, 1300013J15Rik
Upstream geneTom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1
Downstream geneLOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167E03.bB6Ng01-167E03.g
ACCDH958803DH958804
length1,107116
definitionDH958803|Mus musculus domesticus DNA, BAC clone: B6Ng01-167E03, 5' end.DH958804|Mus musculus domesticus DNA, BAC clone: B6Ng01-167E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,044,236 - 61,045,357)(61,162,601 - 61,162,716)
sequence
gaattcagcatagcaacacactattggcttattcaaacatcagcagaaaa
attacatgtacgtgcagggtgtcagagttctgtgagttgttgactcagtt
tagatagccctgctatgtcttcacattcccctttatctttaaggttaagc
tgttcccgggaatgttttaactaaggggcatacccgggtttgtttttctt
ttttctcagccccaggcagcctctaggctcacaaacaaccagcaatttct
gagtagtttatatgacttacagatcttgaaatttcatctttctttcagta
ccaccaggccttattgatgcagtgctggggactgaacctcggcttctgct
tccatgtaagcactctgccaactgagatttattatttagtgcacaggttg
gagaccatctctggtgaagggaaagaaagggaaccacccaggtctcctgc
gtacaaacacccctggagcattttttttttttttttggaattgggcgtgg
cacgatgggaagggtgtgatgtctctttatctcttgttttgcttatctct
tcatctcctctggaactgtgtctttggattctgctgtccactccttcact
gctccagtggatccaggacccaaccctccttactgtctggcttcctccct
cccttaccccctcttaattattctccctgatcccagactgagactggtta
aataatgcgttgttctgagccttccatgtgcatctggtcgagcaggcatc
tggctgggtgacctaaagtgggtggggaaaaaaagcaccatgcaacagca
gcatgctgctccctctataaccagcaggggcagacagaggacaattttta
tggggaaagtgatcataaaaaggtcccgcttattagccgattttgaggaa
atgaggtatgcaccagctccagaagacgccggcatccgagcccacagcca
gtagcttacggaaacgtcctctgctagctgccttgtcatagacacgtaca
catcatttgattacttttattatataagatagagtctcatggggatgtga
tttgtttgtgtgtggtgtttacaaactaaacatcaactctagaattcact
ccctaac
catttctggtctcttgcagtgaaaagccagtttcaggagaagaattggaa
ctagagattttctccaagttcatcctagtactgtgtgtgtgagagagaga
gtggggagggagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61044236_61045357
seq2: B6Ng01-167E03.b_45_1151

seq1  GAATTCAGCATAGCAACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGCAACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50

seq1  ATTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100

seq1  TAGATAGCCCTGCTATGTCTTCACATTCCCCTTTATCTTTAAGGTTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCCCTGCTATGTCTTCACATTCCCCTTTATCTTTAAGGTTAAGC  150

seq1  TGTTCCCGGGAATGTTTTAACTAAGGGGCATACCCGGGTTTGTTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCGGGAATGTTTTAACTAAGGGGCATACCCGGGTTTGTTTTTCTT  200

seq1  TTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTCT  250

seq1  GAGTAGTTTATATGACTTACAGATCTTGAAATTTCATCTTTCTTTCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTTATATGACTTACAGATCTTGAAATTTCATCTTTCTTTCAGTA  300

seq1  CCACCAGGCCTTATTGATGCAGTGCTGGGGACTGAACCTCGGCTTCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGCCTTATTGATGCAGTGCTGGGGACTGAACCTCGGCTTCTGCT  350

seq1  TCCATGTAAGCACTCTGCCAACTGAGATTTATTATTTAGTGCACAGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTAAGCACTCTGCCAACTGAGATTTATTATTTAGTGCACAGGTTG  400

seq1  GAGACCATCTCTGGTGAAGGGAAAGAAAGGGAACCACCCAGGTCTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATCTCTGGTGAAGGGAAAGAAAGGGAACCACCCAGGTCTCCTGC  450

seq1  GTACAAACACCCCTGGAGCATTTTTTTTTTTTTTTTGGAATTGGGCGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAACACCCCTGGAGCATTTTTTTTTTTTTTTTGGAATTGGGCGTGG  500

seq1  CACGATGGGAAGGGTGTGATGTCTCTTTATCTCTTGTTTTGCTTATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATGGGAAGGGTGTGATGTCTCTTTATCTCTTGTTTTGCTTATCTCT  550

seq1  TCATCTCCTCTGGAACTGTGTCTTTGGATTCTGCTGTCCACTCCTTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCTCTGGAACTGTGTCTTTGGATTCTGCTGTCCACTCCTTCACT  600

seq1  GCTCCAGTGGATCCAGGACCCAACCCTCCTTACTGTCTGGCTTCCTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTGGATCCAGGACCCAACCCTCCTTACTGTCTGGCTTCCTCCCT  650

seq1  CCCTTACCCCCTCTTAATTATTCTCCCTGATCCCAGACTGAGACTGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCCCCTCTTAATTATTCTCCCTGATCCCAGACTGAGACTGGTTA  700

seq1  AATAATGCGTTGTTCTGAGCCTTCCATGTGCATCTGGTCGAGCAGGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCGTTGTTCTGAGCCTTCCATGTGCATCTGGTCGAGCAGGCATC  750

seq1  TGGCTGGGTGACCTAAAGTGGGTGGGGAAAAAAAGCACCATGCAACAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGTGACCTAAAGTGGGTGGGGAAAAAAAGCACCATGCAACAGCA  800

seq1  GCATGCTGCTCCCTCTATAACCAGCAGGGGCAGACAGAGGACAATTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTGCTCCCTCTATAACCAGCAGGGGCAGACAGAGGACAATTTTTA  850

seq1  TGGGGAAAGTGATCATAAAAAGGTCCCGCTTATTAGCCGATTTTGAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAGTGATCATAAAAAGGTCCCGCTTATTAGCCGATTTTGAGGAA  900

seq1  ATGAGGTATGCACCAGCTCCAGAAGGACGCCGGCATCCGAGCCCACAGCC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGAGGTATGCACCAGCTCCAGAA-GACGCCGGCATCCGAGCCCACAGCC  949

seq1  AGTAGCTTACGGAAACGTCCTCTTGCTAGGCTGCCTTGTTCATAGACCAC  1000
      |||||||||||||||||||||| ||||| ||||||||| ||||||| |||
seq2  AGTAGCTTACGGAAACGTCCTC-TGCTA-GCTGCCTTG-TCATAGA-CAC  995

seq1  GTACACATCATTTGATTACTTTTTAATTATATAAGATAAGAGGTCTCATT  1050
      |||||||||||||||||||||||  |||||||||||| ||| ||||||| 
seq2  GTACACATCATTTGATTACTTTT--ATTATATAAGAT-AGA-GTCTCAT-  1040

seq1  GGGGGATGTTGATTTGTTT-TGTGTTGTGTTGTTTTACAAACTAAACATC  1099
       ||||||| |||||||||| ||||| |||    |||||||||||||||||
seq2  -GGGGATG-TGATTTGTTTGTGTGTGGTG----TTTACAAACTAAACATC  1084

seq1  -ACTCTAGATTTCAACTCCCTAAC  1122
       |||||||| ||| ||||||||||
seq2  AACTCTAGAATTC-ACTCCCTAAC  1107

seq1: chr11_61162601_61162716
seq2: B6Ng01-167E03.g_71_186 (reverse)

seq1  ATCCCTCCCTCCCCACTCTCTCTCTCACACACACAGTACTAGGATGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCCTCCCCACTCTCTCTCTCACACACACAGTACTAGGATGAACT  50

seq1  TGGAGAAAATCTCTAGTTCCAATTCTTCTCCTGAAACTGGCTTTTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAATCTCTAGTTCCAATTCTTCTCCTGAAACTGGCTTTTCACTG  100

seq1  CAAGAGACCAGAAATG  116
      ||||||||||||||||
seq2  CAAGAGACCAGAAATG  116