BAC Information

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BAC

Clone NameB6Ng01-168E16
Chromosome11 (Build37)
Map Location 76,054,012 - 76,221,972
singlet/doubletdoublet
Overlap geneGlod4, Rnmtl1, Nxn, Timm22
Upstream geneRtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5
Downstream geneAbr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168E16.bB6Ng01-168E16.g
ACCDH959567DH959568
length1,130349
definitionDH959567|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E16, 5' end.DH959568|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,054,012 - 76,055,150)(76,221,624 - 76,221,972)
sequence
gaattctttataagtcagtaaatgtaagcagtgtttccctgaggtcagga
ggaggggctactaggatttgtagctggtcttacacacctccagacacaca
gagaactgagctaatgagatccctggctagaatctggagtcctggagaac
tgcttgctgtgtctgaggtgctgcatgacagtgtggagagacaaagggtg
ctccccgctgctattcaagtagcttctcctgtttcctgcctcctttctgt
tattgttatttattctttaaagtagcttatcccatgccttacactcaact
ttgagagagtgtgttctgctcggagctactcagaaccttagcttgtaaga
taaggcgtcatacccattgcatgcagctttgcagccttcttcaaattcct
catggcggagaacctagtaaagagaagagaataaattataagttccactc
gttggagtactggggatttcaaggacttgtgttagacgagagctctaatg
ctgagcaatgctcttagcgctcaactttaaaggactgtctcactgtgtag
cccagttgctctcaaactatgatcctcctggctcagccatcctcatgctg
gcacttcaagtgtactagtattgtacgtagcgcatttatgcaaactaaca
ggacataaacattatcatttgttagctttactaagagaaacaagcagacc
ttctacgataggtatagcagaggtaagaacatcttaagatgggcctggta
gcacatacctttagtactagcacttaggagacagaggcagatagatttct
gtgagttcaaggtcagcttggtctacatagtgaattccaggacagttgag
gatacatagtaagactctgtcctgcccccactttcccccaaaagagttgc
actcctaaacaggtttgaaatctctttagtgtaggaagccacctgtggta
gagaagtgtgtttagcactcgagactgcagtgtggaatgctgagcacgct
gttttagactcagtttcagactgagtgtgacactctgttgtgaaatgata
acctgtttggagatcgagacagacctagaatacagaaagcctctcactgc
ttggtctctgctcccacctctttctcctga
actatataaactaggctgacctggaactctgagatctgactgcctcttcc
tccctgctttgtttgtttgtttgtttgtttttccagacagggtttctctg
tgtagccctggctgtcctagaactcactctgtagaccaggctggccttga
actcagaaatccacctgcctctgcctcccaagtgctgggattaaaggcgt
gtgccaccactgcccggctaatgtttttcatttgtaatgaaatttgaatt
catctacaaatatacctaaccttttcacctgcacgttttaaatatgctgt
acattctcaaatcctcaaaacgtgaatgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_76054012_76055150
seq2: B6Ng01-168E16.b_44_1173

seq1  GAATTCTTTATAAGTCAGTAAATGTAAGCAGTGTTTCCCTGAGGTCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAAGTCAGTAAATGTAAGCAGTGTTTCCCTGAGGTCAGGA  50

seq1  GGAGGGGCTACTAGGATTTGTAGCTGGTCTTACACACCTCCAGACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCTACTAGGATTTGTAGCTGGTCTTACACACCTCCAGACACACA  100

seq1  GAGAACTGAGCTAATGAGATCCCTGGCTAGAATCTGGAGTCCTGGAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGAGCTAATGAGATCCCTGGCTAGAATCTGGAGTCCTGGAGAAC  150

seq1  TGCTTGCTGTGTCTGAGGTGCTGCATGACAGTGTGGAGAGACAAAGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTGTGTCTGAGGTGCTGCATGACAGTGTGGAGAGACAAAGGGTG  200

seq1  CTCCCCGCTGCTATTCAAGTAGCTTCTCCTGTTTCCTGCCTCCTTTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCGCTGCTATTCAAGTAGCTTCTCCTGTTTCCTGCCTCCTTTCTGT  250

seq1  TATTGTTATTTATTCTTTAAAGTAGCTTATCCCATGCCTTACACTCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTATTTATTCTTTAAAGTAGCTTATCCCATGCCTTACACTCAACT  300

seq1  TTGAGAGAGTGTGTTCTGCTCGGAGCTACTCAGAACCTTAGCTTGTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAGTGTGTTCTGCTCGGAGCTACTCAGAACCTTAGCTTGTAAGA  350

seq1  TAAGGCGTCATACCCATTGCATGCAGCTTTGCAGCCTTCTTCAAATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCGTCATACCCATTGCATGCAGCTTTGCAGCCTTCTTCAAATTCCT  400

seq1  CATGGCGGAGAACCTAGTAAAGAGAAGAGAATAAATTATAAGTTCCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGGAGAACCTAGTAAAGAGAAGAGAATAAATTATAAGTTCCACTC  450

seq1  GTTGGAGTACTGGGGATTTCAAGGACTTGTGTTAGACGAGAGCTCTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGTACTGGGGATTTCAAGGACTTGTGTTAGACGAGAGCTCTAATG  500

seq1  CTGAGCAATGCTCTTAGCGCTCAACTTTAAAGGACTGTCTCACTGTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAATGCTCTTAGCGCTCAACTTTAAAGGACTGTCTCACTGTGTAG  550

seq1  CCCAGTTGCTCTCAAACTATGATCCTCCTGGCTCAGCCATCCTCATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGCTCTCAAACTATGATCCTCCTGGCTCAGCCATCCTCATGCTG  600

seq1  GCACTTCAAGTGTACTAGTATTGTACGTAGCGCATTTATGCAAACTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCAAGTGTACTAGTATTGTACGTAGCGCATTTATGCAAACTAACA  650

seq1  GGACATAAACATTATCATTTGTTAGCTTTACTAAGAGAAACAAGCAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAAACATTATCATTTGTTAGCTTTACTAAGAGAAACAAGCAGACC  700

seq1  TTCTACGATAGGTATAGCAGAGGTAAGAACATCTTAAGATGGGCCTGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACGATAGGTATAGCAGAGGTAAGAACATCTTAAGATGGGCCTGGTA  750

seq1  GCACATACCTTTAGTACTAGCACTTAGGAGACAGAGGCAGATAGATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACCTTTAGTACTAGCACTTAGGAGACAGAGGCAGATAGATTTCT  800

seq1  GTGAGTTCAAGGTCAGCTTGGTCTACATAGTGAATTCCAGGACAGTTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCAAGGTCAGCTTGGTCTACATAGTGAATTCCAGGACAGTTGAG  850

seq1  GATACATAGTAAGACTCTGTCCTGCCCCCACTTTCCCCCAAAAGAGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATAGTAAGACTCTGTCCTGCCCCCACTTTCCCCCAAAAGAGTTGC  900

seq1  ACTCCTAAACAGGTTTGAAATCTCTTTAGGGTAGGAAGCCACCTGTGGTA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTCCTAAACAGGTTTGAAATCTCTTTAGTGTAGGAAGCCACCTGTGGTA  950

seq1  GAGAAGTGTGTTTAGCACTCGAGACTGCAGTGTGGAATGCTGAGCACGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGTGTTTAGCACTCGAGACTGCAGTGTGGAATGCTGAGCACGCT  1000

seq1  GTTTTAGACTCAGTTTCAGACTGAGTGTGACAACTCTGTTGGTGAAAATG  1050
      ||||||||||||||||||||||||||||||| |||||||| ||||||   
seq2  GTTTTAGACTCAGTTTCAGACTGAGTGTGAC-ACTCTGTT-GTGAAA--T  1046

seq1  GATAACCTGTTTGGAGAGCCGAGACAGAACCTAGAATACAGAAAG-CTCT  1099
      |||||||||||||||||  |||||||| ||||||||||||||||| ||||
seq2  GATAACCTGTTTGGAGA-TCGAGACAG-ACCTAGAATACAGAAAGCCTCT  1094

seq1  CACTGTCTTGGTCTCTGCTCCCCACCTCCTTTTCTCCTGA  1139
      ||||| ||||||||||||| ||||||||  ||||||||||
seq2  CACTG-CTTGGTCTCTGCT-CCCACCTC--TTTCTCCTGA  1130

seq1: chr11_76221624_76221972
seq2: B6Ng01-168E16.g_75_423 (reverse)

seq1  ACACACACACACACACACACACATTCACGTTTTGAGGATTTGAGAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACATTCACGTTTTGAGGATTTGAGAATGTA  50

seq1  CAGCATATTTAAAACGTGCAGGTGAAAAGGTTAGGTATATTTGTAGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATTTAAAACGTGCAGGTGAAAAGGTTAGGTATATTTGTAGATGA  100

seq1  ATTCAAATTTCATTACAAATGAAAAACATTAGCCGGGCAGTGGTGGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATTTCATTACAAATGAAAAACATTAGCCGGGCAGTGGTGGCACA  150

seq1  CGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT  200

seq1  CAAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACAC  250

seq1  AGAGAAACCCTGTCTGGAAAAACAAACAAACAAACAAACAAAGCAGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTGGAAAAACAAACAAACAAACAAACAAAGCAGGGAG  300

seq1  GAAGAGGCAGTCAGATCTCAGAGTTCCAGGTCAGCCTAGTTTATATAGT  349
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCAGTCAGATCTCAGAGTTCCAGGTCAGCCTAGTTTATATAGT  349