BAC Information

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BAC

Clone NameB6Ng01-168M12
Chromosome11 (Build37)
Map Location 34,607,281 - 34,608,327
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403, Dock2
Downstream geneCcdc99, LOC100038976, Slit3, LOC100039006, Pank3, LOC666733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M12.bB6Ng01-168M12.g
ACCDH959931DH959932
length1,0801,187
definitionDH959931|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M12, 5' end.DH959932|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaggaagacatcaggtctccttgacatcctggaactggagttg
aggatggttgtgagccacctcaggggtgctgggaactgaactcgagtcct
ctgcaagagcaacttgtgctcttaactgctgagcctcgtctccagactcc
tcatttttatttatatgaatatctgtgtgagtgaatgccatgtatctgtg
tggggtactcagagaaacccaatgaggtccctggattctctggaggtggg
gttataggccggtgaaatcctatgtgttggagctgggaacaaaagtcgag
gtctctggaaaaacggtaagtgttctttacttcggagtcatctctctcgc
cctgccatgcttttctttctaaagtactacccgaaatctcatgaggacta
aatcctttaacaaatttctactgaaattcccaggcctctctgtatcgtgt
actgaccatgaataaatcctactttttctatgattggcagattccatggg
ggctttgtgtaaataacatagccaaatgacactgggaaactgtggacagg
tctactgacaccatctctggcatgtgtctttattacattattgcacccca
ccaccttatacccatccagagtcagcagtccatggatgcggactttaact
gttctcatcttgtctactcttgagcttttaagtgtattttccaatgattt
atgggatgtcgggccgtggtggcacatgcctttagtcccatacttgaggg
gcatagacaggctgattctgattaagagaccttcctggtctacagagtga
gtcccgaaagttccaggggtcccagagaaaccctatcttgaacatcaagc
aaacaataatgcttatttattatttggatttgattatatgggcccaataa
aatattaaaagaaatgataactatacaatctgcaggagtatatatacctt
tgaaaaagcattctacagctccccactcattacatgacataaaaccctaa
atcaatacctgacctgctctctcaagaagggtcatcctgtctccgtctgg
atcaacacatgacggccagaatcaatgtgg
gaattctccccccatgccccattttatattgtttaggaattttataagtg
cataaaatgtgtttggttaaatccagtcatcattcccttcctccgttttc
tcatcttcctttgacccccacttctccttctcagtattagattgtctttt
ggtgttttttaatttacagtctacttactacttactgctgtctgtatatg
catgggtcaaggaccatgtgtgcgagcatgggtaacctggcaggagcttg
atcctggaaggattatctatgtgagatctggtaacctaccagggacttca
tcctggaaggagcatctgtgagagcacaggttatcaagcaggagctttgt
cttgaaagaaatcaaattcagcttcttctagcagccattaactatctgtc
actcctccactggggtgcaatttcatgtcagggttagggttaagattggg
tttttggaccaactagtacaggtagtactagttgaattcagtttagtggt
tttatgctttaagcccagagtttctagaaagtttaaaaatattactttgt
tgctattctccacttgataggtattatttttgatattttcttcactttta
catggtttttattatgggaatctgtttatagagcagcgggtttacagtct
tcagttatcacaatgccaaactcctcggcagagtttatattcaatctgtg
tatcagccgtactttcccattcctttgcgtacattattgtttttattgaa
aatggcgtgtttagtactgtaataactctgatatcatatcctccttcctc
tccacactttgtcatgtttccattcatctttgttctgactgttttgcaca
aattctatattatctggtcataggaaacactggatgcgtctagattttct
ttctgtactccctaagatcacactgaaggacgctttagtggatgtacagt
taaaggtgattcctgctgatgctggagactcaatgagggatgccttaaaa
agctagttcgtgtccatctgatggcaaggaaggatctggattaccttgaa
ccaggggaaaggaagcacaagaaggcgtaatgtatactacattggtatag
tctcagtcagagaatcctgagatttgtattgccatagggttggtttgcga
tataaagaaaggtcttctcatgatgggagtagtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_34607281_34608327
seq2: B6Ng01-168M12.b_97_1125

seq1  GGATGGTTGTGAGCCACCTCAGGGGTGCTGGGAACTGAACTCGAGTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTGTGAGCCACCTCAGGGGTGCTGGGAACTGAACTCGAGTCCTC  50

seq1  TGCAAGAGCAACAAGTGCTCTTAACTGCTGAGCCAGGTCTCCAGACTCCT  100
      ||||||||||||  ||||||||||||||||||||  ||||||||||||||
seq2  TGCAAGAGCAACTTGTGCTCTTAACTGCTGAGCCTCGTCTCCAGACTCCT  100

seq1  CATTTTTATTTATATGAATATCTGTGTGAGTGAATGCCATGTATCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATTTATATGAATATCTGTGTGAGTGAATGCCATGTATCTGTGT  150

seq1  GGGGTACTCAGAGAAACCCAAGGAGGTCACTGGATTCTCTGGAGGTGGGG  200
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  GGGGTACTCAGAGAAACCCAATGAGGTCCCTGGATTCTCTGGAGGTGGGG  200

seq1  TTATAGGCAGTTGTGAGCCTATGTGTTGGAGCTGGGAACAAAACTCAAGT  250
      |||||||| | ||  | |||||||||||||||||||||||||| || || 
seq2  TTATAGGCCGGTGAAATCCTATGTGTTGGAGCTGGGAACAAAAGTCGAGG  250

seq1  TCTCTGGAAGAACGGCAAGTGTACTTAACTTCGGAGTCATCTCTCTCGCC  300
      ||||||||| ||||| |||||| ||| |||||||||||||||||||||||
seq2  TCTCTGGAAAAACGGTAAGTGTTCTTTACTTCGGAGTCATCTCTCTCGCC  300

seq1  CTGCCATGCTTTTCTTTCTAAAGTACTACCCGAAATCACATGAAGACTAA  350
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  CTGCCATGCTTTTCTTTCTAAAGTACTACCCGAAATCTCATGAGGACTAA  350

seq1  ATCCTTTAACAAATTTCTACTGAGATACCCAGGCCTCTCTGTAGTGTGTA  400
      ||||||||||||||||||||||| || ||||||||||||||||  |||||
seq2  ATCCTTTAACAAATTTCTACTGAAATTCCCAGGCCTCTCTGTATCGTGTA  400

seq1  CTGACCAGCAATAAATCCTACTTTTTCTATGATTGGCATATTCCAGGTGG  450
      |||||||  ||||||||||||||||||||||||||||| |||||| | ||
seq2  CTGACCATGAATAAATCCTACTTTTTCTATGATTGGCAGATTCCATGGGG  450

seq1  GCTTTGTGTAGAGAACAGTGCCAAATGTCACTGGAAGACTGTGGACAGTT  500
      |||||||||| | ||||  |||||||| |||||| | ||||||||||| |
seq2  GCTTTGTGTAAATAACATAGCCAAATGACACTGGGAAACTGTGGACAGGT  500

seq1  CTACTGACACCATCTCTGAAATGTGTCTTTATTTAATTATTGCACCCCAC  550
      ||||||||||||||||||  |||||||||||||  |||||||||||||||
seq2  CTACTGACACCATCTCTGGCATGTGTCTTTATTACATTATTGCACCCCAC  550

seq1  CACCTTAGACCCATCCAGAGTCAGCAGTCCCTGGATGCGGACTTTAACTG  600
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  CACCTTATACCCATCCAGAGTCAGCAGTCCATGGATGCGGACTTTAACTG  600

seq1  TTCTTATCTTGTCTACTCTTGAGCTATAAGGTGTATTTTCCAATGATAAA  650
      |||| |||||||||||||||||||| | | |||||||||||||||||  |
seq2  TTCTCATCTTGTCTACTCTTGAGCTTTTAAGTGTATTTTCCAATGATTTA  650

seq1  AGTAATGTCGGGCAGTGGTGGCACATGCCTTTAGTCCCAGCACTTGGGGG  700
       |  ||||||||| |||||||||||||||||||||||||  ||||| |||
seq2  TGGGATGTCGGGCCGTGGTGGCACATGCCTTTAGTCCCA-TACTTGAGGG  699

seq1  GCAGAGACAGGCAGATTTCTGAGTTTGAGACCAGCCTGGTCTACAGAGTG  750
      ||| |||||||| || |||||| |  ||||||  ||||||||||||||||
seq2  GCATAGACAGGCTGA-TTCTGATTAAGAGACCTTCCTGGTCTACAGAGTG  748

seq1  AGTTCCAGGACAG--CCAGGGCTCCACAGAGAAACCCTGTCTTGAAAAAC  798
      ||| ||  || ||  |||||| ||| |||||||||||| ||||||| | |
seq2  AGTCCC--GAAAGTTCCAGGGGTCC-CAGAGAAACCCTATCTTGAACATC  795

seq1  AAACAAACAATAATGCTTATTTATTACTTTGCCTTTTGAGTTATCCAT-G  847
      || ||||||||||||||||||||||| || |   ||||| ||||  || |
seq2  AAGCAAACAATAATGCTTATTTATTATTTGG--ATTTGA-TTAT--ATGG  840

seq1  GTCCAAAAAAATATTAAATAGAAAATTCAGAACTATACAATCTGCAGGAG  897
      | |||| ||||||||||| |||||  | | ||||||||||||||||||||
seq2  GCCCAATAAAATATTAAA-AGAAA--TGATAACTATACAATCTGCAGGAG  887

seq1  CAATATAATTTCTTTTAAAAAAGCAATTACAATAGCTCCCCACTCCTTTA  947
         ||||  | | ||| ||||||||  | | | ||||||||||| | |||
seq2  ---TATATATACCTTTGAAAAAGCA--TTCTACAGCTCCCCACT-CATTA  931

seq1  CCTGACATAAGACCCCCAGATGAAAACCTGACGTTGCGCTCTC-TGTGTG  996
      | |||||||| | ||| | || || |||||||  ||| |||||  |   |
seq2  CATGACATAA-AACCCTAAATCAATACCTGAC-CTGCTCTCTCAAGAAGG  979

seq1  CTCTTTCCTGTTTCCTGTCGTGAT-AAAAAAAGAGGCCCAGAGTCAATGT  1045
       ||  |||||| ||| |||  ||| || | | || | ||||| |||||||
seq2  GTC-ATCCTGTCTCC-GTCTGGATCAACACATGACGGCCAGAATCAATGT  1027

seq1  GG  1047
      ||
seq2  GG  1029