BAC Information

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BAC

Clone NameB6Ng01-169B23
Chromosome11 (Build37)
Map Location 63,760,764 - 63,888,418
singlet/doubletdoublet
Overlap geneCox10
Upstream geneCdrt4, Tekt3, Pmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1
Downstream gene2810001G20Rik, EG544785, Hs3st3a1, LOC626959, Elac2, AU040829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169B23.bB6Ng01-169B23.g
ACCDH960183DH960184
length1,231827
definitionDH960183|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B23, 5' end.DH960184|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,887,189 - 63,888,418)(63,760,764 - 63,761,589)
sequence
gaattcttctcaaacagttccactaactggggcctaggtactcaaatata
tgagcctatgggagacattcttacttaaatcaccaaagtattgtttacat
aaactgacagataattatattgtacgtatggaggcatgaacgtccattca
cctcagataggacattgggtgcctgagcaaaaaactagtccatctaagta
taaattggtgccaaatgagtttatttgaatacttacaggattacgagtga
ggggttacttacaggagtgggggacaattgggcatcactgaaaaggccac
cccagaatgggtgatggatagctcaggaaaactgcatccctacagtgtcc
tgtgcacctgcaggaagctacacacaggagtctcctcttaccttgcaact
gttactgcttgtataactccagggagggaccttttcaatcttaaaacttg
ctgagcttactgaaccctgtaggtttgtcagcttcttaagaactatgagc
cttcctctaggaagaaatacttaaatccagtggaaataactgcacaatgc
aaagaaaattgaggcacactaggaaactaaaaagcagaaaacagagcaca
gagaaactaggctgtggaagccatgagaggagacactcaaaaagatgggg
acctggagggtaagcaagggggtaactgcagtatcacacacacacacaca
cacacacacacacacacacacacactctcacatgttgatttgagacatta
gtaaagtaagatttggatgcaacagaagcagcttattcctaactgggttg
ctggtcagattttactgaaaagtattttccctcccttgtagtattatcta
tgcaaccataatcaaaatggcaaccttcacctcagtttactggcattcag
taagaaaagatgtatgccaccttttctacttttgaagatgtggactcact
gagttgtattttcttcttagaaacatctacactatggtagtctccacgct
ccgctgaattgttgtacgcattatgatgtgagagtggaggtttccctggt
cctcctgaagactgttcctgacctaagcctaaggctgatgagtgccactc
cattcctggggttgggaggcagaggtggttggagccagacctccacacga
gcaatcacagctgcttgctctcttaggtgggatgtgggcactggtgagtg
aaccgtcattcttacaagttcgtcctctcct
gaattccaggcttatattcccacaagtgcaggcccaggagctcaagtgaa
agaagacctgagcatgagtcttgaggtcaatgcctgaaacacatatcggt
gctgaaatgggtcaccgtggccaagaggacactaaatactcccattgatc
aatcccatgtggcatgtcacctgtggcacctggttagaatcagctccatc
caagtcctgcaagctaagaatagaataggggtactggtgcccccaggatg
tcagggtcatcgtaacagaagaaacatggatgaaaagcttgggaccacat
ttaacggtgccttcactaagcagatttttcaaaactttatctctttgagt
cagtggttctccctggggatgtgtgacttgttcccaggataaatgaaata
cttttattttctacagctggaagtgctgcaggggaggacggctggaagct
gctgaaatcctgtctacagtggacagtgttcccaaaacagaattatttgg
tgcgaaatgtcaataatgttgaggaggagaagccatgttcatgtggaagt
gcagccaagaaagctgtggttcatcattgagaaaagaggaggaggtagcc
agatgtggtaatccacacttgtaataccagcaactgcctggactgtctca
gagagagagagagagagagagagagagagagagagagagaggcagagaca
cagagagagacacacagagagagacagagacagagagagacagagacaga
gagacagagagagagacacagagagagagacacagagagacagagagtgc
aggagttagagggagtgggggatagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_63887189_63888418
seq2: B6Ng01-169B23.b_43_1273 (reverse)

seq1  AGGAGAGGAAG-ACATGTAGAAATGACAGCTGTTCACTCA-CAGTGCCCA  48
      ||||||||| | || ||||  |||||   | ||||||||| |||||||||
seq2  AGGAGAGGACGAACTTGTAAGAATGA---CGGTTCACTCACCAGTGCCCA  47

seq1  CAT-CCACCTAGAGGCAAAGCCAAGCAGAT-TGA-TGCTCTGTGT-GAGG  94
      ||| ||||||| ||  | || ||||||| | ||| ||||| |||| ||||
seq2  CATCCCACCTA-AG--AGAG-CAAGCAGCTGTGATTGCTC-GTGTGGAGG  92

seq1  CTGGGCTCCAAACCACCTCTGCCTCC--AACCCAGGAAT-GAGTGGCACT  141
         |||||| ||||||||||||||||  | ||||||||| ||||||||||
seq2  TCTGGCTCC-AACCACCTCTGCCTCCCAACCCCAGGAATGGAGTGGCACT  141

seq1  CATCAGCCTTAGGCTTAGGTCAGGAACAGTCTTCAGGAGGACCAGGGAAA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCTTAGGCTTAGGTCAGGAACAGTCTTCAGGAGGACCAGGGAAA  191

seq1  CCT-CACTCTCACATCATAATGCGTACAACAATTCAGCGGAGCGTGGAGA  240
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACTCTCACATCATAATGCGTACAACAATTCAGCGGAGCGTGGAGA  241

seq1  CTACCATAGTGTAGATGTTTCTAAGAAGAAAATACAACTCAGTGAGTCCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATAGTGTAGATGTTTCTAAGAAGAAAATACAACTCAGTGAGTCCA  291

seq1  CATCTTCAAAAGTAGAAAAGGTGGCATACATCTTTTCTTACTGAATGCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAAAAGTAGAAAAGGTGGCATACATCTTTTCTTACTGAATGCCA  341

seq1  GTAAACTGAGGTGAAGGTTGCCATTTTGATTATGGTTGCATAGATAATAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTGAGGTGAAGGTTGCCATTTTGATTATGGTTGCATAGATAATAC  391

seq1  TACAAGGGAGGGAAAATACTTTTCAGTAAAATCTGACCAGCAACCCAGTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGGAGGGAAAATACTTTTCAGTAAAATCTGACCAGCAACCCAGTT  441

seq1  AGGAATAAGCTGCTTCTGTTGCATCCAAATCTTACTTTACTAATGTCTCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAGCTGCTTCTGTTGCATCCAAATCTTACTTTACTAATGTCTCA  491

seq1  AATCAACATGTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACATGTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  541

seq1  TGTGTGATACTGCAGTTACCCCCTTGCTTACCCTCCAGGTCCCCATCTTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATACTGCAGTTACCCCCTTGCTTACCCTCCAGGTCCCCATCTTT  591

seq1  TTGAGTGTCTCCTCTCATGGCTTCCACAGCCTAGTTTCTCTGTGCTCTGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTCTCCTCTCATGGCTTCCACAGCCTAGTTTCTCTGTGCTCTGT  641

seq1  TTTCTGCTTTTTAGTTTCCTAGTGTGCCTCAATTTTCTTTGCATTGTGCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTTTTAGTTTCCTAGTGTGCCTCAATTTTCTTTGCATTGTGCA  691

seq1  GTTATTTCCACTGGATTTAAGTATTTCTTCCTAGAGGAAGGCTCATAGTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCCACTGGATTTAAGTATTTCTTCCTAGAGGAAGGCTCATAGTT  741

seq1  CTTAAGAAGCTGACAAACCTACAGGGTTCAGTAAGCTCAGCAAGTTTTAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAGCTGACAAACCTACAGGGTTCAGTAAGCTCAGCAAGTTTTAA  791

seq1  GATTGAAAAGGTCCCTCCCTGGAGTTATACAAGCAGTAACAGTTGCAAGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAAGGTCCCTCCCTGGAGTTATACAAGCAGTAACAGTTGCAAGG  841

seq1  TAAGAGGAGACTCCTGTGTGTAGCTTCCTGCAGGTGCACAGGACACTGTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAGACTCCTGTGTGTAGCTTCCTGCAGGTGCACAGGACACTGTA  891

seq1  GGGATGCAGTTTTCCTGAGCTATCCATCACCCATTCTGGGGTGGCCTTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCAGTTTTCCTGAGCTATCCATCACCCATTCTGGGGTGGCCTTTT  941

seq1  CAGTGATGCCCAATTGTCCCCCACTCCTGTAAGTAACCCCTCACTCGTAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGCCCAATTGTCCCCCACTCCTGTAAGTAACCCCTCACTCGTAA  991

seq1  TCCTGTAAGTATTCAAATAAACTCATTTGGCACCAATTTATACTTAGATG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAAGTATTCAAATAAACTCATTTGGCACCAATTTATACTTAGATG  1041

seq1  GACTAGTTTTTTGCTCAGGCACCCAATGTCCTATCTGAGGTGAATGGACG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTTTTTTGCTCAGGCACCCAATGTCCTATCTGAGGTGAATGGACG  1091

seq1  TTCATGCCTCCATACGTACAATATAATTATCTGTCAGTTTATGTAAACAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCTCCATACGTACAATATAATTATCTGTCAGTTTATGTAAACAA  1141

seq1  TACTTTGGTGATTTAAGTAAGAATGTCTCCCATAGGCTCATATATTTGAG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGTGATTTAAGTAAGAATGTCTCCCATAGGCTCATATATTTGAG  1191

seq1  TACCTAGGCCCCAGTTAGTGGAACTGTTTGAGAAGAATTC  1230
      ||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGGCCCCAGTTAGTGGAACTGTTTGAGAAGAATTC  1231

seq1: chr11_63760764_63761589
seq2: B6Ng01-169B23.g_67_893

seq1  GAATTCCAGGCTTATATTCCCACAAGTGCAGGCCCAGGAGCTCAAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTTATATTCCCACAAGTGCAGGCCCAGGAGCTCAAGTGAA  50

seq1  AGAAGACCTGAGCATGAGTCTTGAGGTCAATGCCTGAAACACATATCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCTGAGCATGAGTCTTGAGGTCAATGCCTGAAACACATATCGGT  100

seq1  GCTGAAATGGGTCACCGTGGCCAAGAGGACACTAAATACTCCCATTGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATGGGTCACCGTGGCCAAGAGGACACTAAATACTCCCATTGATC  150

seq1  AATCCCATGTGGCATGTCACCTGTGGCACCTGGTTAGAATCAGCTCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATGTGGCATGTCACCTGTGGCACCTGGTTAGAATCAGCTCCATC  200

seq1  CAAGTCCTGCAAGCTAAGAATAGAATAGGGGTACTGGTGCCCCCAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTGCAAGCTAAGAATAGAATAGGGGTACTGGTGCCCCCAGGATG  250

seq1  TCAGGGTCATCGTAACAGAAGAAACATGGATGAAAAGCTTGGGACCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCATCGTAACAGAAGAAACATGGATGAAAAGCTTGGGACCACAT  300

seq1  TTAACGGTGCCTTCACTAAGCAGATTTTTCAAAACTTTATCTCTTTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGGTGCCTTCACTAAGCAGATTTTTCAAAACTTTATCTCTTTGAGT  350

seq1  CAGTGGTTCTCCCTGGGGATGTGTGACTTGTTCCCAGGATAAATGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTCTCCCTGGGGATGTGTGACTTGTTCCCAGGATAAATGAAATA  400

seq1  CTTTTATTTTCTACAGCTGGAAGTGCTGCAGGGGAGGACGGCTGGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTCTACAGCTGGAAGTGCTGCAGGGGAGGACGGCTGGAAGCT  450

seq1  GCTGAAATCCTGTCTACAGTGGACAGTGTTCCCAAAACAGAATTATTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATCCTGTCTACAGTGGACAGTGTTCCCAAAACAGAATTATTTGG  500

seq1  TGCGAAATGTCAATAATGTTGAGGAGGAGAAGCCATGTTCATGTGGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAATGTCAATAATGTTGAGGAGGAGAAGCCATGTTCATGTGGAAGT  550

seq1  GCAGCCAAGAAAGCTGTGGTTCATCATTGAGAAAAGAGGAGGAGGTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAAGAAAGCTGTGGTTCATCATTGAGAAAAGAGGAGGAGGTAGCC  600

seq1  AGATGTGGTAATCCACACTTGTAATACCAGCAACTGCCTGGACTGTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGTAATCCACACTTGTAATACCAGCAACTGCCTGGACTGTCTCA  650

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGACA  700

seq1  CAGAGAGAGACACACAGAGAGAGACAGAGACAGAGAGAGACAGAGACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGACACACAGAGAGAGACAGAGACAGAGAGAGACAGAGACAGA  750

seq1  GAGACAGAGAGAGAGACACAGAGAGAGAGACACAGAGAGACAGAGAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGAGAGACACAGAGAGAGAGACACAGAGAGACAGAGAGTGC  800

seq1  AGGAGTTAGAGGGAGT-GGGGATAGGA  826
      |||||||||||||||| ||||||||||
seq2  AGGAGTTAGAGGGAGTGGGGGATAGGA  827