BAC Information

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BAC

Clone NameB6Ng01-169G02
Chromosome11 (Build37)
Map Location 40,425,771 - 40,426,228
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039241, LOC382508
Downstream geneLOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285, Hspd1, LOC100039292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169G02.bB6Ng01-169G02.g
ACCDH960373DH960374
length9771,208
definitionDH960373|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G02, 5' end.DH960374|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccataagaaaacaaaattggaagccaagaaactgtagagttaaag
aagagaataaaacaaaacataataaattattaaaaacaaaagaaagtaat
acaaaacaaggaaaagccctgacatgaaattatgaggaaaaaagaaagaa
agaaaaagaagagaagagaagagaagagaagagaagagaagagaagagaa
gagaagagaagagaagagaaaagaagagaaaagaaaagaaaagaaaagaa
gagaagagaagagaagagaaaagaaaagaaaagaaaagaaaagaaaagaa
aagaaaagaaaagaaaagaaaagaactgcccttgagtatttttttgttgt
tgatgcccttctaggactgcccatgcagcctatacttgaaagtgatttgt
ttctccactgaaacccccttgaaggaaattatattttcacttgtaggtgg
gtaccaataagaaataacttctggaagagggatacaggcatgtatccatt
tctcctttcatctctaggacccaatctgataaagacacatgtaagaggca
gtggctcttaccatagaaacaaggctttctaagcacaataggaccaattc
acaaatgaattcccagagactatggaataatatacagggactgcaggtat
cagtttgtgcctattctttcacagggtttcttgagacattaaaagaggaa
ttggatataaatatcttatagaggctgagtgttccaaggtctctcactct
ctggaaaatttctgtctgtagatatctatatttgttcccctgtgctacag
aaagaagcttctctgttgatgactgatcaaggcatggatctataaatata
gcaaaatgttattaagaataattttgttgctatattcttttagtagaaca
gagtatttggtatactctaagattcctggtttctatcattgggttactga
ttaccagcagtgcattatggattccat
gaattctggaatacagcttcgttgactctcagaaaatacttcccagaaga
tttcacctcagtgatgctggtgtcttcttcatcacatctaatttttagct
acacctgtccagcatcaattgtcttagtagtctcttctattcttgcctgt
aaagacaggctattggtcaagcctatatgcagcagaagatcccagcatac
tgaaggtgccagtaccataggatgagcagtaagacagtaggtgcagtaga
gtggagtcaaacagagcttagagttatatagagggcaaagaaggaaaagt
ggcttagtctctttggaggcacagaggagatcatgtgtggatggcagaca
ttgaaacattaagctataatattgaagctaccttggacaccctaagattt
tgaaacaaataaaaccagccaaagagaaagaactgtgctgcaatgaaaaa
agcagaaaggagttagagatctttagaatgtttttacatcagacatggag
atgcagagtttgggaatagcccagctggcttttggccttgtttatttcta
gtatttcttcacaatgacctttaggaacggtgaagtatatcctgtgaatt
tggaggtatatggtatgctttttgttttgaaaatataagggattactgtc
acataatagaattaatctcaaaagagtatttgaactttggactctaaaca
catttttgagactgctgtagatgatagggacttttgaagttagagctcat
ttattttgaattatgctatgtataagtacggtctccatatactcatgtgt
ttcaacaatcatataggggccaagcagtggaatatggtaatttaattatg
cttggataagggagtggcactattaggaagtgtggaggaagtgcatcgct
gtgggggtgggctttgaaattcatcccagtactgagagaccctcctcctt
ggaagacagtcttttcctgactgcctttgggattaagatgcagaactctt
agcttctctcagcatcatgtctgcgtttaggcctagcatcttcctactct
gatgaaatgactacacctctgaacctgtagccagcccaatttattggtgc
cttttttaggaagaagaggtatgacgtggaataccaaccttctctggata
atggaacaattgctataaccattaactgcgtgcgcctcgctaggagtaag
aagtgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40425771_40426228
seq2: B6Ng01-169G02.b_71_283

seq1  GGAAGCCAAGAAACTGGAAGTGGGCCACTAAGGCTGGGCACCTAAGGGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAATTAAAGCTCAGGTAAAATGAAAATGGAGAAAGGGCTTAGTAGATGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAGGCAGGGTTCAAATGTGGAAGAGGAGAGGAATGGGGAAGTCAGGCA  150
                                            ||||| || | |
seq2  --------------------------------------GGAAGCCAAGAA  12

seq1  TTGGTAGAAGGCTTAGCTG-CAATAAAGTTTGTTATGTATGACAATGC-T  198
         |||| ||    ||  |  ||||||              ||||  | |
seq2  ACTGTAG-AGTTAAAGAAGAGAATAAA--------------ACAAAACAT  47

seq1  ATTTGGAAACCTATTATCTTCCAACCCAAGAGAAAAAAAT-CAATCAGGT  247
      | |    ||  |||||      ||  ||| |||||  ||| |||      
seq2  AAT----AAATTATTA------AAAACAAAAGAAAGTAATACAA------  81

seq1  GGAACAAGAGAACACAGGTGAGTTCACGTTTGTTCTTGTGGTGGTTGTTG  297
        |||||| ||| |    |||                             
seq2  --AACAAG-GAAAAGCCCTGA-----------------------------  99

seq1  TGGTTGTTGTCGGTGGTGGTGGCCGCCATTTTGTTTTCTTGCCTCTGCAA  347
                                ||                 || ||
seq2  --------------------------CA-----------------TGAAA  106

seq1  TTGTATGGTGCTGGAAATAAAACTTGTCGTGAAAG-AGAGAAAAGAAAGG  396
      |  ||||     ||||| || |      |  |||| |||||| ||||   
seq2  T--TATG----AGGAAAAAAGAAAGAAAGAAAAAGAAGAGAAGAGAA---  147

seq1  GAGAA-AGAA-AGAA-AGAAAAAGAGAGAGGGGGAAGGGAAAAGA--ACA  441
      ||||| |||| |||| |||| |  |||||  | |||| ||| |||  | |
seq2  GAGAAGAGAAGAGAAGAGAAGAGAAGAGA-AGAGAAGAGAAGAGAAGAGA  196

seq1  AAAGAAGAGAAAAGAAA  458
      |||||||||||||||||
seq2  AAAGAAGAGAAAAGAAA  213