BAC Information

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BAC

Clone NameB6Ng01-169H20
Chromosome11 (Build37)
Map Location 83,510,416 - 83,691,729
singlet/doubletdoublet
Overlap geneOTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2
Upstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4
Downstream geneDdx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169H20.bB6Ng01-169H20.g
ACCDH960456DH960457
length1,046941
definitionDH960456|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H20, 5' end.DH960457|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,690,677 - 83,691,729)(83,510,416 - 83,511,366)
sequence
gaattcctctcatatagggagagagaggagagtgtggactcttgggtaat
attggcttgtcttgtccctcgcatggcctttggcactgaagcctggggaa
ggggatctcttgactgggatctgtaagctgaacccagaatctggtgggtt
gccttcagccccgacacttcattttgaagccagctcgtattcgtgatagt
gaaggaatgttcctccagttagtggacctatgccagctcgagtgagcgcc
ccagccaccggcagagtaaacattactcaactagtcagggctctgtcacc
cacattcttcctctgtgttcctaacctcatgcagagcacagccccaaacc
cattgggtctgaaaactagatatctgaactggggtgggagggagcacgag
aaggagaaaggtcttccaaaatgaagccattgtgcccattaatcatgggc
agacagaactgttttctaagaagccccaaccttgttctgggaagtggagg
gtgggggcattaaactggtcttggtggcctagccatatgtcctcagaacc
ccctaccttcctcacctaaacaccagtcacttctattgaggacagaggca
gagagactgcagtctggtgaattcctaagatacccatttatcattgaaag
aatgtgaacaatcccttggcttcaaattggggactcgagaaaccaaagct
tcctaatgaattagcacagctccctcagtttctccacagaccttcttgcc
attctgcataccgtttctccctgaggataaagacccacatttgcatgggg
tttagcagattgaaagtctaaagcttaggaaggaaaaaaaagctgatgaa
aaatgaaagcaatttaaatactaggtgggtctcagttctagatcccaaag
acctcagtgggagccccattcacgacaggagagacacagacaggccccgg
agacggcaaacactcttgattcaagggtaaagcattgaatgacacttcag
gaggcccacaactggtttttttatagaatcatgtaaacacgagcag
gaattccttaaagtcaggcaggcatgtgttacaatggagattcaaaggcc
aatataactagattgtagaaacatcgtgtgtgtcagcgtgagctgtgtac
aggtttctattactttctaacagtggtgactatctttgcctgggaagatg
tcagaagagagatcaaataggaatagcttaagttaggacacacaaacaca
accagacaagggagtaaggatcagacgcaggacaagtctaggccttcctt
gggagttggggaattgcttgttccagatggatgcagtgtctgggtctggg
aatgcacaataagcccacgtctagtcagcaatgagctgccaaacagaggg
tcagggtcaaacaacaagaggtttctaacgtgaggaaaatatcataatca
aatctgtattgcagatgacttagagccatgtagaagatggatgcaatctt
cataagcatgattaatggccagcccaagaagatttcttctgaatccacag
agcccatgcttggctacttccttgtcccagaatagcatccttagaagaca
aatatataatgtggtgacaatatacccatgtatttgtgtccaaaataaac
tatcctcagcatcattttcattgatccatttccttttttatttttatttt
ttcatttttacaagataggatttatctgtatattcctggctgtcctggaa
ctcagtctgtagatcaggctggcctgaaattcagaaatctgcctgccttt
ccctaccaagtactgggattaaaggcatgtgccaaaactgccagctatgt
tcaccttttatttcaacattcattgactattctatcctgcagagccatcc
ctgcagcctcccatgtacactgagctcgcagcatcccatcagtccaagac
agtcttctatgtaatttctctcccatgcccattaaactaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83690677_83691729
seq2: B6Ng01-169H20.b_46_1091 (reverse)

seq1  CTGCTCGTGTTTACATTGATTTCTATAAGAAAACCAGTTTGTGGGCCTCC  50
      ||||||||||||||| ||| |||||||| |||||||| |||||||||| |
seq2  CTGCTCGTGTTTACA-TGA-TTCTATAAAAAAACCAG-TTGTGGGCCT-C  46

seq1  CTGAAGTGTCATTCAATGCTTTACCCCTTGAATCAAGAGTGTTTGCCGTC  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  CTGAAGTGTCATTCAATGCTTTA-CCCTTGAATCAAGAGTGTTTGCCGT-  94

seq1  CTCCGGGGCCTGTCTGTGTCTCTCCTGTCGTGAATGGGGCTCCCACCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCCGGGGCCTGTCTGTGTCTCTCCTGTCGTGAATGGGGCTCCCA-CTGA  143

seq1  GGTCTTTGGGATCTAGAACTGAGACCCACCTAGTATTTAAATTGCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGGGATCTAGAACTGAGACCCACCTAGTATTTAAATTGCTTTCA  193

seq1  TTTTTCATCAGCTTTTTTTTCCTTCCTAAGCTTTAGACTTTCAATCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATCAGCTTTTTTTTCCTTCCTAAGCTTTAGACTTTCAATCTGCT  243

seq1  AAACCCCATGCAAATGTGGGTCTTTATCCTCAGGGAGAAACGGTATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCATGCAAATGTGGGTCTTTATCCTCAGGGAGAAACGGTATGCAG  293

seq1  AATGGCAAGAAGGTCTGTGGAGAAACTGAGGGAGCTGTGCTAATTCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAAGAAGGTCTGTGGAGAAACTGAGGGAGCTGTGCTAATTCATTA  343

seq1  GGAAGCTTTGGTTTCTCGAGTCCCCAATTTGAAGCCAAGGGATTGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTTGGTTTCTCGAGTCCCCAATTTGAAGCCAAGGGATTGTTCAC  393

seq1  ATTCTTTCAATGATAAATGGGTATCTTAGGAATTCACCAGACTGCAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCAATGATAAATGGGTATCTTAGGAATTCACCAGACTGCAGTCT  443

seq1  CTCTGCCTCTGTCCTCAATAGAAGTGACTGGTGTTTAGGTGAGGAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTGTCCTCAATAGAAGTGACTGGTGTTTAGGTGAGGAAGGTA  493

seq1  GGGGGTTCTGAGGACATATGGCTAGGCCACCAAGACCAGTTTAATGCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTCTGAGGACATATGGCTAGGCCACCAAGACCAGTTTAATGCCCC  543

seq1  CACCCTCCACTTCCCAGAACAAGGTTGGGGCTTCTTAGAAAACAGTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCACTTCCCAGAACAAGGTTGGGGCTTCTTAGAAAACAGTTCTG  593

seq1  TCTGCCCATGATTAATGGGCACAATGGCTTCATTTTGGAAGACCTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCATGATTAATGGGCACAATGGCTTCATTTTGGAAGACCTTTCTC  643

seq1  CTTCTCGTGCTCCCTCCCACCCCAGTTCAGATATCTAGTTTTCAGACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGTGCTCCCTCCCACCCCAGTTCAGATATCTAGTTTTCAGACCCA  693

seq1  ATGGGTTTGGGGCTGTGCTCTGCATGAGGTTAGGAACACAGAGGAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTGGGGCTGTGCTCTGCATGAGGTTAGGAACACAGAGGAAGAAT  743

seq1  GTGGGTGACAGAGCCCTGACTAGTTGAGTAATGTTTACTCTGCCGGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGACAGAGCCCTGACTAGTTGAGTAATGTTTACTCTGCCGGTGGC  793

seq1  TGGGGCGCTCACTCGAGCTGGCATAGGTCCACTAACTGGAGGAACATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGCTCACTCGAGCTGGCATAGGTCCACTAACTGGAGGAACATTCC  843

seq1  TTCACTATCACGAATACGAGCTGGCTTCAAAATGAAGTGTCGGGGCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATCACGAATACGAGCTGGCTTCAAAATGAAGTGTCGGGGCTGAA  893

seq1  GGCAACCCACCAGATTCTGGGTTCAGCTTACAGATCCCAGTCAAGAGATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACCCACCAGATTCTGGGTTCAGCTTACAGATCCCAGTCAAGAGATC  943

seq1  CCCTTCCCCAGGCTTCAGTGCCAAAGGCCATGCGAGGGACAAGACAAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCCAGGCTTCAGTGCCAAAGGCCATGCGAGGGACAAGACAAGCC  993

seq1  AATATTACCCAAGAGTCCACACTCTCCTCTCTCTCCCTATATGAGAGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACCCAAGAGTCCACACTCTCCTCTCTCTCCCTATATGAGAGGAA  1043

seq1  TTC  1053
      |||
seq2  TTC  1046

seq1: chr11_83510416_83511366
seq2: B6Ng01-169H20.g_66_1006

seq1  GAATTCCTTAAAGTCAGGCAGGCATGTGTTACAATGGAGATTCAAAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAAGTCAGGCAGGCATGTGTTACAATGGAGATTCAAAGGCC  50

seq1  AATATAACTAGATTGTAGAAACATCGTGTGTGTCAGCGTGAGCTGTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACTAGATTGTAGAAACATCGTGTGTGTCAGCGTGAGCTGTGTAC  100

seq1  AGGTTTCTATTACTTTCTAACAGTGGTGACTATCTTTGCCTGGGAAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTATTACTTTCTAACAGTGGTGACTATCTTTGCCTGGGAAGATG  150

seq1  TCAGAAGAGAGATCAAATAGGAATAGCTTAAGTTAGGACACACAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGAGATCAAATAGGAATAGCTTAAGTTAGGACACACAAACACA  200

seq1  ACCAGACAAGGGAGTAAGGATCAGACGCAGGACAAGTCTAGGCCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAAGGGAGTAAGGATCAGACGCAGGACAAGTCTAGGCCTTCCTT  250

seq1  GGGAGTTGGGGAATTGCTTGTTCCAGATGGATGCAGTGTCTGGGTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGGGGAATTGCTTGTTCCAGATGGATGCAGTGTCTGGGTCTGGG  300

seq1  AATGCACAATAAGCCCACGTCTAGTCAGCAATGAGCTGCCAAACAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACAATAAGCCCACGTCTAGTCAGCAATGAGCTGCCAAACAGAGGG  350

seq1  TCAGGGTCAAACAACAAGAGGTTTCTAACGTGAGGAAAATATCATAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCAAACAACAAGAGGTTTCTAACGTGAGGAAAATATCATAATCA  400

seq1  AATCTGTATTGCAGATGACTTAGAGCCATGTAGAAGATGGATGCAATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTATTGCAGATGACTTAGAGCCATGTAGAAGATGGATGCAATCTT  450

seq1  CATAAGCATGATTAATGGCCAGCCCAAGAAGATTTCTTCTGAATCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCATGATTAATGGCCAGCCCAAGAAGATTTCTTCTGAATCCACAG  500

seq1  AGCCCATGCTTGGCTACTTCCTTGTCCCAGAATAGCATCCTTAGAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGCTTGGCTACTTCCTTGTCCCAGAATAGCATCCTTAGAAGACA  550

seq1  AATATATAATGTGGTGACAATATACCCATGTATTTGTGTCCAAAATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAATGTGGTGACAATATACCCATGTATTTGTGTCCAAAATAAAC  600

seq1  TATCCTCAGCATCATTTTCATTGATCCATTTCCTTTTTTATTTTTATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCAGCATCATTTTCATTGATCCATTTCCTTTTTTATTTTTATTTT  650

seq1  TTCATTTTTACAAGATAGGATTTATCTGTATATTCCTGGCTGTCCTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTACAAGATAGGATTTATCTGTATATTCCTGGCTGTCCTGGAA  700

seq1  CTCAGTCTGTAGATCAGGCTGGCCTGAAATTCAGAAATCTGCCTGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTGTAGATCAGGCTGGCCTGAAATTCAGAAATCTGCCTGCCTTT  750

seq1  CCCTACCAAGTACTGGGATTAAAGGCATGTGCCAAAACTGCCCAGCTATT  800
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  CCCTACCAAGTACTGGGATTAAAGGCATGTGCCAAAACTG-CCAGCTA-T  798

seq1  GTTCACTTTTTATTTCCACATTCATTGACTATTCTATCCTGCAGAGCCAT  850
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTCACCTTTTATTTCAACATTCATTGACTATTCTATCCTGCAGAGCCAT  848

seq1  CCCTGCAGCCTCCCATGTACACTGAGCTCGCAGCATCCCATCAGTCCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCTGCAGCCTCCCATGTACACTGAGCTCGCAGCATCCCATCAGTCCAAG  898

seq1  GAACAAGTCTTCCTATGTAATTTCTCTCCCCATGCCACATTTAAAACTAG  950
        || |||||| ||||||||||||||| |||||||| ||||  |||||||
seq2  --AC-AGTCTT-CTATGTAATTTCTCT-CCCATGCC-CATT--AAACTAG  940

seq1  A  951
      |
seq2  A  941