BAC Information

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BAC

Clone NameB6Ng01-169K20
Chromosome11 (Build37)
Map Location 83,510,416 - 83,691,729
singlet/doubletdoublet
Overlap geneOTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2
Upstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4
Downstream geneDdx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169K20.bB6Ng01-169K20.g
ACCDH960592DH960593
length1,0481,128
definitionDH960592|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K20, 5' end.DH960593|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,690,674 - 83,691,729)(83,510,416 - 83,511,556)
sequence
gaattcctctcatatagggagagagaggagagtgtggactcttgggtaat
attggcttgtcttgtccctcgcatggcctttggcactgaagcctggggaa
ggggatctcttgactgggatctgtaagctgaacccagaatctggtgggtt
gccttcagccccgacacttcattttgaagccagctcgtattcgtgatagt
gaaggaatgttcctccagttagtggacctatgccagctcgagtgagcgcc
ccagccaccggcagagtaaacattactcaactagtcagggctctgtcacc
cacattcttcctctgtgttcctaacctcatgcagagcacagccccaaacc
cattgggtctgaaaactagatatctgaactggggtgggagggagcacgag
aaggagaaaggtcttccaaaatgaagccattgtgcccattaatcatgggc
agacagaactgttttctaagaagccccaaccttgttctgggaagtggagg
gtgggggcattaaactggtcttggtggcctagccatatgtcctcagaacc
ccctaccttcctcacctaaacaccagtcacttctattgaggacagaggca
gagagactgcagtctggtgaattcctaagatacccatttatcattgaaag
aatgtgaacaatcccttggcttcaaattggggactcgagaaaccaaagct
tcctaatgaattagcacagctccctcagtttctccacagaccttcttgcc
attctgcataccgtttctccctgaggataaagacccacatttgcatgggg
tttagcagattgaaagtctaaagcttaggaaggaaaaaaaagctgatgaa
aatgaaagcaatttaaatactaggtgggtctcagttctagatcccaaaga
cctcagtgggagccccattcacgacaggagagacacagacaggcccggag
gacggcaaacactctgattcaagggtaaagcattgaatgacacttcagga
gcccacaaactggttttcttatagaatccatgtaaacacgagcagccg
gaattccttaaagtcaggcaggcatgtgttacaatggagattcaaaggcc
aatataactagattgtagaaacatcgtgtgtgtcagcgtgagctgtgtac
aggtttctattactttctaacagtggtgactatctttgcctgggaagatg
tcagaagagagatcaaataggaatagcttaagttaggacacacaaacaca
accagacaagggagtaaggatcagacgcaggacaagtctaggccttcctt
gggagttggggaattgcttgttccagatggatgcagtgtctgggtctggg
aatgcacaataagcccacgtctagtcagcaatgagctgccaaacagaggg
tcagggtcaaacaacaagaggtttctaacgtgaggaaaatatcataatca
aatctgtattgcagatgacttagagccatgtagaagatggatgcaatctt
cataagcatgattaatggccagcccaagaagatttcttctgaatccacag
agcccatgcttggctacttccttgtcccagaatagcatccttagaagaca
aatatataatgtggtgacaatatacccatgtatttgtgtccaaaataaac
tatcctcagcatcattttcattgatccatttccttttttatttttatttt
ttcatttttacaagataggatttatctgtatattcctggctgtcctggaa
ctcagtctgtagatcaggctggcctgaaattcagaaatctgcctgccttt
ccctaccaagtactgggattaaaggcatgtgccaaaactgcccagctatt
gttcactttttatttccacattcattgactattctatcctgcagagccat
ccctgcagcctcccatgtacactgagctcgcagcatcccatcagtcccag
gaacagtcttcctatgtaattctctccccatgccacatttaaactagaga
caggcagagacatagtatatattgggggcatattctggaacatagtccag
tcagcaatgaaatgacctgagcagctgtctcatgagtggtcctctggaac
tgccatttattaatggatgatggatcccgaagcaaggttgctcaggaatt
ctcattgtgaaagatatccaaatcctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83690674_83691729
seq2: B6Ng01-169K20.b_48_1095 (reverse)

seq1  CGGCTGCTCGTGTTTACATTGATTTCTATAAGAAAACCAGTTTGTGGGCC  50
      ||||||||||||||||||| || |||||||||||||||||||||||||| 
seq2  CGGCTGCTCGTGTTTACATGGA-TTCTATAAGAAAACCAGTTTGTGGGC-  48

seq1  TCCCTGAAGTGTCATTCAATGCTTTACCCCTTGAATCAAGAGTGTTTGCC  100
        |||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  -TCCTGAAGTGTCATTCAATGCTTTA-CCCTTGAATC-AGAGTGTTTGCC  95

seq1  GTCCTCCGGGGCCTGTCTGTGTCTCTCCTGTCGTGAATGGGGCTCCCACC  150
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  GTCCTCC-GGGCCTGTCTGTGTCTCTCCTGTCGTGAATGGGGCTCCCA-C  143

seq1  TGAGGTCTTTGGGATCTAGAACTGAGACCCACCTAGTATTTAAATTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTTTGGGATCTAGAACTGAGACCCACCTAGTATTTAAATTGCTT  193

seq1  TCATTTTTCATCAGCTTTTTTTTCCTTCCTAAGCTTTAGACTTTCAATCT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TTTTCATCAGCTTTTTTTTCCTTCCTAAGCTTTAGACTTTCAATCT  242

seq1  GCTAAACCCCATGCAAATGTGGGTCTTTATCCTCAGGGAGAAACGGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACCCCATGCAAATGTGGGTCTTTATCCTCAGGGAGAAACGGTATG  292

seq1  CAGAATGGCAAGAAGGTCTGTGGAGAAACTGAGGGAGCTGTGCTAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGCAAGAAGGTCTGTGGAGAAACTGAGGGAGCTGTGCTAATTCA  342

seq1  TTAGGAAGCTTTGGTTTCTCGAGTCCCCAATTTGAAGCCAAGGGATTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGCTTTGGTTTCTCGAGTCCCCAATTTGAAGCCAAGGGATTGTT  392

seq1  CACATTCTTTCAATGATAAATGGGTATCTTAGGAATTCACCAGACTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTTCAATGATAAATGGGTATCTTAGGAATTCACCAGACTGCAG  442

seq1  TCTCTCTGCCTCTGTCCTCAATAGAAGTGACTGGTGTTTAGGTGAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGCCTCTGTCCTCAATAGAAGTGACTGGTGTTTAGGTGAGGAAG  492

seq1  GTAGGGGGTTCTGAGGACATATGGCTAGGCCACCAAGACCAGTTTAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGGTTCTGAGGACATATGGCTAGGCCACCAAGACCAGTTTAATGC  542

seq1  CCCCACCCTCCACTTCCCAGAACAAGGTTGGGGCTTCTTAGAAAACAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCTCCACTTCCCAGAACAAGGTTGGGGCTTCTTAGAAAACAGTT  592

seq1  CTGTCTGCCCATGATTAATGGGCACAATGGCTTCATTTTGGAAGACCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCCATGATTAATGGGCACAATGGCTTCATTTTGGAAGACCTTT  642

seq1  CTCCTTCTCGTGCTCCCTCCCACCCCAGTTCAGATATCTAGTTTTCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCGTGCTCCCTCCCACCCCAGTTCAGATATCTAGTTTTCAGAC  692

seq1  CCAATGGGTTTGGGGCTGTGCTCTGCATGAGGTTAGGAACACAGAGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGTTTGGGGCTGTGCTCTGCATGAGGTTAGGAACACAGAGGAAG  742

seq1  AATGTGGGTGACAGAGCCCTGACTAGTTGAGTAATGTTTACTCTGCCGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGTGACAGAGCCCTGACTAGTTGAGTAATGTTTACTCTGCCGGT  792

seq1  GGCTGGGGCGCTCACTCGAGCTGGCATAGGTCCACTAACTGGAGGAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGCGCTCACTCGAGCTGGCATAGGTCCACTAACTGGAGGAACAT  842

seq1  TCCTTCACTATCACGAATACGAGCTGGCTTCAAAATGAAGTGTCGGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACTATCACGAATACGAGCTGGCTTCAAAATGAAGTGTCGGGGCT  892

seq1  GAAGGCAACCCACCAGATTCTGGGTTCAGCTTACAGATCCCAGTCAAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAACCCACCAGATTCTGGGTTCAGCTTACAGATCCCAGTCAAGAG  942

seq1  ATCCCCTTCCCCAGGCTTCAGTGCCAAAGGCCATGCGAGGGACAAGACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTCCCCAGGCTTCAGTGCCAAAGGCCATGCGAGGGACAAGACAA  992

seq1  GCCAATATTACCCAAGAGTCCACACTCTCCTCTCTCTCCCTATATGAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATATTACCCAAGAGTCCACACTCTCCTCTCTCTCCCTATATGAGAG  1042

seq1  GAATTC  1056
      ||||||
seq2  GAATTC  1048

seq1: chr11_83510416_83511556
seq2: B6Ng01-169K20.g_67_1194

seq1  GAATTCCTTAAAGTCAGGCAGGCATGTGTTACAATGGAGATTCAAAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAAGTCAGGCAGGCATGTGTTACAATGGAGATTCAAAGGCC  50

seq1  AATATAACTAGATTGTAGAAACATCGTGTGTGTCAGCGTGAGCTGTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACTAGATTGTAGAAACATCGTGTGTGTCAGCGTGAGCTGTGTAC  100

seq1  AGGTTTCTATTACTTTCTAACAGTGGTGACTATCTTTGCCTGGGAAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTATTACTTTCTAACAGTGGTGACTATCTTTGCCTGGGAAGATG  150

seq1  TCAGAAGAGAGATCAAATAGGAATAGCTTAAGTTAGGACACACAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGAGATCAAATAGGAATAGCTTAAGTTAGGACACACAAACACA  200

seq1  ACCAGACAAGGGAGTAAGGATCAGACGCAGGACAAGTCTAGGCCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAAGGGAGTAAGGATCAGACGCAGGACAAGTCTAGGCCTTCCTT  250

seq1  GGGAGTTGGGGAATTGCTTGTTCCAGATGGATGCAGTGTCTGGGTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGGGGAATTGCTTGTTCCAGATGGATGCAGTGTCTGGGTCTGGG  300

seq1  AATGCACAATAAGCCCACGTCTAGTCAGCAATGAGCTGCCAAACAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACAATAAGCCCACGTCTAGTCAGCAATGAGCTGCCAAACAGAGGG  350

seq1  TCAGGGTCAAACAACAAGAGGTTTCTAACGTGAGGAAAATATCATAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCAAACAACAAGAGGTTTCTAACGTGAGGAAAATATCATAATCA  400

seq1  AATCTGTATTGCAGATGACTTAGAGCCATGTAGAAGATGGATGCAATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTATTGCAGATGACTTAGAGCCATGTAGAAGATGGATGCAATCTT  450

seq1  CATAAGCATGATTAATGGCCAGCCCAAGAAGATTTCTTCTGAATCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCATGATTAATGGCCAGCCCAAGAAGATTTCTTCTGAATCCACAG  500

seq1  AGCCCATGCTTGGCTACTTCCTTGTCCCAGAATAGCATCCTTAGAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGCTTGGCTACTTCCTTGTCCCAGAATAGCATCCTTAGAAGACA  550

seq1  AATATATAATGTGGTGACAATATACCCATGTATTTGTGTCCAAAATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAATGTGGTGACAATATACCCATGTATTTGTGTCCAAAATAAAC  600

seq1  TATCCTCAGCATCATTTTCATTGATCCATTTCCTTTTTTATTTTTATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCAGCATCATTTTCATTGATCCATTTCCTTTTTTATTTTTATTTT  650

seq1  TTCATTTTTACAAGATAGGATTTATCTGTATATTCCTGGCTGTCCTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTACAAGATAGGATTTATCTGTATATTCCTGGCTGTCCTGGAA  700

seq1  CTCAGTCTGTAGATCAGGCTGGCCTGAAATTCAGAAATCTGCCTGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTGTAGATCAGGCTGGCCTGAAATTCAGAAATCTGCCTGCCTTT  750

seq1  CCCTACCAAGTACTGGGATTAAAGGCATGTGCCAAAACTGCCCAGCTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCAAGTACTGGGATTAAAGGCATGTGCCAAAACTGCCCAGCTATT  800

seq1  GTTCACTTTTTATTTCCACATTCATTGACTATTCTATCCTGCAGAGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTTTTATTTCCACATTCATTGACTATTCTATCCTGCAGAGCCAT  850

seq1  CCCTGCAGCCTCCCATGTACACTGAGCTCGCAGCATCCCATCAGTCCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGCCTCCCATGTACACTGAGCTCGCAGCATCCCATCAGTCCCAG  900

seq1  GAACAAGTCTTCCTATGTAATTTCTCTCCCCATGCCACATTTAAAACTAG  950
      |||| ||||||||||||||| ||||||||||||||||||||| |||||||
seq2  GAAC-AGTCTTCCTATGTAA-TTCTCTCCCCATGCCACATTT-AAACTAG  947

seq1  AGACAAGGCAGGAGACATAAGTATATATTGGGGGCATATTCTGGAACATA  1000
      |||| ||||| ||||||| |||||||||||||||||||||||||||||| 
seq2  AGAC-AGGCA-GAGACAT-AGTATATATTGGGGGCATATTCTGGAACAT-  993

seq1  AGTCCAGTCAAGCAATGAAAATGACCTGAGCAGGCTGTCTCATGAAGTAG  1050
      ||||||||| ||||||| |||||||||||||| ||||||||||| ||| |
seq2  AGTCCAGTC-AGCAATG-AAATGACCTGAGCA-GCTGTCTCATG-AGT-G  1038

seq1  GTCTCCTGGAGCTG-CATTTATTTAATGGATGAT-GATCCAGAAGCAGGT  1098
      |||  ||||| ||| |||||| |||||||||||| ||||| |||||| | 
seq2  GTCCTCTGGAACTGCCATTTA-TTAATGGATGATGGATCCCGAAGCAAG-  1086

seq1  ATGGCTCAGGAATTCCCCATTGTAGAATA-ATCCAAAATCCTGC  1141
       | ||||||||||| | ||||||  || | |||| |||||||||
seq2  GTTGCTCAGGAATT-CTCATTGTGAAAGATATCC-AAATCCTGC  1128