BAC Information

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BAC

Clone NameB6Ng01-170F12
Chromosome11 (Build37)
Map Location 107,284,822 - 107,376,170
singlet/doubletdoublet
Overlap genePitpnc1, Psmd12
Upstream geneErn1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream geneA830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381, Ccdc46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170F12.bB6Ng01-170F12.g
ACCDH961081DH961082
length1,1131,092
definitionDH961081|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F12, 5' end.DH961082|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,375,050 - 107,376,170)(107,284,822 - 107,285,922)
sequence
gaattctttctttaaaatgattgttaaggtcggtcaggcagtggtggtgt
gcatgcctttaatcccagcacttggaaggcagaggcaggaggatttctga
gttcaaggccagcctggtctacagagtgagtcccaggacagccagggcta
cacagagaaaccctgtctccaaaaacaaaacaaaacaaaacaaaacaaga
tgattgttaatattattattgtcgttattattgttaattatttttaatgt
gtatgggtgtttgccttcatgcgtacctgctacctaaggaagctagaaga
gggcatctaatcccttgggactggagtaacagatgtttatgaactgacat
gtggatgctgggaattgaaccctggtcctctggaagagcagcaggtgctc
taaccattgaagcatctctccagccctagacaggtcttgatattctgccc
tgggactcatacagagagtcatgtaaaacactgaagagttccaaatgtct
tcctctcagtgctggtattacgggcttgttcctccacacctaagcacgtt
tacttggcccatgtttctggaggttcttagtccaagaccacgaattctga
gggcacccaagagaggcacaaattggaaatagcttggtcaaaagcaagtg
gtcacttctagaggttgggaggcagaggcagccagatctcagtgatttca
aggtcagcctgttctaccgagggagttccaggacagctggggccgcgtgg
aaagaacttgtcacaaaataacacaacgtgaaaacaagtggtcatatctt
atatagaaagccagagggagtccagagtcccacaatcctctgcatttgtt
tcttcctcctcttctcttcttcctcttcttctcttcctcctcctcatctt
tctccttctctcttttttccttctcctcctccccagacccctgtcccttc
tctctgtctctcctctctcttctctttctcttcctcacaaagtcaaacct
agcctggaactcctatatacaccaggctgaccttaaactcacagtatcgt
ttgcttgtgccttctccggtgcaagcaccataaattctcttcaaacttcc
acctactaaaata
gaattcctgccccacacccctcccccagcaccaaataagccagaccgtat
ggtaaggactggagttcaaagtcatccttgactatgtaaagttagaccca
agcctgggctacaagagctatcgtcacaaagcaccaaaccaacaactgac
aatcagtctctgtacttaaggttttttgacaatgatactgattgatgaac
aaacatttattcatcaaacccaagaaaatgacaaagaaaaaggggctgga
gagatggctcagcagttaagagcattgactgctcgtccagaggtcctgag
ttcaattcccagcaaccacttggtagctcacaaccatctgtaatgagatc
tggcaccctctcctggcgtgtctgaagacagctacagtgtactcacatat
aataataaataaatcatatatatatatatatatatatatatacacacata
tacatatgtatatatatatagttaaaaaatcagctatgatccattccgag
actgtgtaagacatggtctcactagctgtaagcactgcatatccctggat
cctctaacacagacggacacactctaaagggaatgctgactctcccagac
actgtgtcacagggagggaaactatccaaagcctggatgaacaagtgtca
catcagacgcccaagcatccgtcaggcgctcttgattacgaagacgggtg
aattgatttcctcccgcccgccttgctcacacgaaggaagggatcaatcc
tccctcccccgtcttcagacaagcctttgattccgccattaacattttcc
acaaagcctcaatcaaatcagattatatatttgcctggaatttgcttccc
gagtgttaaatatgatttatttttagctgtgtgggtgatgggagttgtgt
gaagaggtcccggtgagaataatcagttggcagccaagcctggaggtgca
gcctgtattcgcatggaaggagactggggaagatggcagacagctcacac
tcccttggaagaggatactaaaggagtgttgtgctgcccagcaaaaatag
caacagtcttcaaaaaggctggacctcgaggattaatcaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107375050_107376170
seq2: B6Ng01-170F12.b_46_1158 (reverse)

seq1  TATTTTAAGTAGTGTGAAGTTTG-AGAGAATTTATGGTGCTTTGCACC-G  48
      |||||| |||||   |||||||| |||||||||||||||| ||||||| |
seq2  TATTTT-AGTAGGTGGAAGTTTGAAGAGAATTTATGGTGC-TTGCACCGG  48

seq1  AGAAGGCACAGGCAAAACGATCACTGTGAGTTTAAGGTCAGCCTGGTGTA  98
      |||||||||| || ||||||| ||||||||||||||||||||||||||||
seq2  AGAAGGCACAAGC-AAACGAT-ACTGTGAGTTTAAGGTCAGCCTGGTGTA  96

seq1  TATAGGGAGTTCCAGGCTAGGTTTGACTTTGTTGAGGAAGAGAAAGAGAA  148
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATA-GGAGTTCCAGGCTAGGTTTGACTTTG-TGAGGAAGAGAAAGAGAA  144

seq1  GAGAGAGGGAGAGACAGAGAGAAGGGACAGGGGTCTGGGGGAGGAGGAGA  198
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGAGA-GGAGAGACAGAGAGAAGGGACAGGGGTCT-GGGGAGGAGGAGA  192

seq1  AGGAAAAAAGAGAAGAAGGAGAAAGATGAGGAGGAGGAAGAGAAGAAGAG  248
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAGAG-AGAAGGAGAAAGATGAGGAGGAGGAAGAGAAGAAGAG  241

seq1  GAAGAAGAGAAGAGGAGGAAGAAAACAAATGCAGAGGATTGTGGGACTCT  298
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGAAGAGAAGAGGAGGAAG-AAACAAATGCAGAGGATTGTGGGACTCT  290

seq1  GGACTCCCTCTGGCTTTCTATATAAGATATGACCACTTGTTTTCACGTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCCTCTGGCTTTCTATATAAGATATGACCACTTGTTTTCACGTTG  340

seq1  TGTTATTTTGTGACAAGTTCTTTCCACGCGGCCCCAGCTGTCCTGGAACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTGTGACAAGTTCTTTCCACGCGGCCCCAGCTGTCCTGGAACT  390

seq1  CCCTCGGTAGAACAGGCTGACCTTGAAATCACTGAGATCTGGCTGCCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGTAGAACAGGCTGACCTTGAAATCACTGAGATCTGGCTGCCTCT  440

seq1  GCCTCCCAACCTCTAGAAGTGACCACTTGCTTTTGACCAAGCTATTTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAACCTCTAGAAGTGACCACTTGCTTTTGACCAAGCTATTTCCA  490

seq1  ATTTGTGCCTCTCTTGGGTGCCCTCAGAATTCGTGGTCTTGGACTAAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGCCTCTCTTGGGTGCCCTCAGAATTCGTGGTCTTGGACTAAGAA  540

seq1  CCTCCAGAAACATGGGCCAAGTAAACGTGCTTAGGTGTGGAGGAACAAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAAACATGGGCCAAGTAAACGTGCTTAGGTGTGGAGGAACAAGC  590

seq1  CCGTAATACCAGCACTGAGAGGAAGACATTTGGAACTCTTCAGTGTTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAATACCAGCACTGAGAGGAAGACATTTGGAACTCTTCAGTGTTTTA  640

seq1  CATGACTCTCTGTATGAGTCCCAGGGCAGAATATCAAGACCTGTCTAGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCTCTGTATGAGTCCCAGGGCAGAATATCAAGACCTGTCTAGGG  690

seq1  CTGGAGAGATGCTTCAATGGTTAGAGCACCTGCTGCTCTTCCAGAGGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGATGCTTCAATGGTTAGAGCACCTGCTGCTCTTCCAGAGGACC  740

seq1  AGGGTTCAATTCCCAGCATCCACATGTCAGTTCATAAACATCTGTTACTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCAATTCCCAGCATCCACATGTCAGTTCATAAACATCTGTTACTC  790

seq1  CAGTCCCAAGGGATTAGATGCCCTCTTCTAGCTTCCTTAGGTAGCAGGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAAGGGATTAGATGCCCTCTTCTAGCTTCCTTAGGTAGCAGGTA  840

seq1  CGCATGAAGGCAAACACCCATACACATTAAAAATAATTAACAATAATAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGAAGGCAAACACCCATACACATTAAAAATAATTAACAATAATAAC  890

seq1  GACAATAATAATATTAACAATCATCTTGTTTTGTTTTGTTTTGTTTTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAATAATATTAACAATCATCTTGTTTTGTTTTGTTTTGTTTTGTT  940

seq1  TTTGGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGGACTCACTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGGACTCACTC  990

seq1  TGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTCCTGCCTCTGCCTTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTCCTGCCTCTGCCTTCC  1040

seq1  AAGTGCTGGGATTAAAGGCATGCACACCACCACTGCCTGACCGACCTTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTAAAGGCATGCACACCACCACTGCCTGACCGACCTTAA  1090

seq1  CAATCATTTTAAAGAAAGAATTC  1121
      |||||||||||||||||||||||
seq2  CAATCATTTTAAAGAAAGAATTC  1113

seq1: chr11_107284822_107285922
seq2: B6Ng01-170F12.g_69_1160

seq1  GAATTCCTGCCCCACACCCCTCCCCCAGCACCAAATAAGCCAGACCGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCCCACACCCCTCCCCCAGCACCAAATAAGCCAGACCGTAT  50

seq1  GGTAAGGACTGGAGTTCAAAGTCATCCTTGACTATGTAAAGTTAGACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGACTGGAGTTCAAAGTCATCCTTGACTATGTAAAGTTAGACCCA  100

seq1  AGCCTGGGCTACAAGAGCTATCGTCACAAAGCACCAAACCAACAACTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGCTACAAGAGCTATCGTCACAAAGCACCAAACCAACAACTGAC  150

seq1  AATCAGTCTCTGTACTTAAGGTTTTTTGACAATGATACTGATTGATGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCTCTGTACTTAAGGTTTTTTGACAATGATACTGATTGATGAAC  200

seq1  AAACATTTATTCATCAAACCCAAGAAAATGACAAAGAAAAAGGGGCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTATTCATCAAACCCAAGAAAATGACAAAGAAAAAGGGGCTGGA  250

seq1  GAGATGGCTCAGCAGTTAAGAGCATTGACTGCTCGTCCAGAGGTCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGCAGTTAAGAGCATTGACTGCTCGTCCAGAGGTCCTGAG  300

seq1  TTCAATTCCCAGCAACCACTTGGTAGCTCACAACCATCTGTAATGAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCCAGCAACCACTTGGTAGCTCACAACCATCTGTAATGAGATC  350

seq1  TGGCACCCTCTCCTGGCGTGTCTGAAGACAGCTACAGTGTACTCACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCCTCTCCTGGCGTGTCTGAAGACAGCTACAGTGTACTCACATAT  400

seq1  AATAATAAATAAATCATATATATATATATATATATATATATACACACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAATAAATCATATATATATATATATATATATATATACACACATA  450

seq1  TACATATGTATATATATATAGTTAAAAAATCAGCTATGATCCATTCCGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGTATATATATATAGTTAAAAAATCAGCTATGATCCATTCCGAG  500

seq1  ACTGTGTAAGACATGGTCTCACTAGCTGTAAGCACTGCATATCCCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAAGACATGGTCTCACTAGCTGTAAGCACTGCATATCCCTGGAT  550

seq1  CCTCTAACACAGACGGACACACTCTAAAGGGAATGCTGACTCTCCCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAACACAGACGGACACACTCTAAAGGGAATGCTGACTCTCCCAGAC  600

seq1  ACTGTGTCACAGGGAGGGAAACTATCCAAAGCCTGGATGAACAAGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCACAGGGAGGGAAACTATCCAAAGCCTGGATGAACAAGTGTCA  650

seq1  CATCAGACGCCCAAGCATCCGTCAGGCGCTCTTGATTACGAAGACGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACGCCCAAGCATCCGTCAGGCGCTCTTGATTACGAAGACGGGTG  700

seq1  AATTGATTTCCTCCCGCCCGCCTTGCTCACACGAAGGAAGGGATCAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTTCCTCCCGCCCGCCTTGCTCACACGAAGGAAGGGATCAATCC  750

seq1  TCCCTCCCCCGTCTTCAAGACAAGCCTTTGATTCCGCCATTAACATTTTC  800
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCCGTCTTC-AGACAAGCCTTTGATTCCGCCATTAACATTTTC  799

seq1  CACAAAGCCTCAATCAAATCAGATTATATATTTGCCTGGAATTTTGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||   | |
seq2  CACAAAGCCTCAATCAAATCAGATTATATATTTGCCTGGAATTTGCTTCC  849

seq1  CGAGTGTTAAATATGATTTATTTTTAGCTGTGTGGGTGATGGGAGTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGTTAAATATGATTTATTTTTAGCTGTGTGGGTGATGGGAGTTGTG  899

seq1  TTAACAGGCCCCGGTGAGAATAATCAGTTGGCAGCCAAGCCT-GAGGTGC  949
      | || ||| ||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAGAGGTCCCGGTGAGAATAATCAGTTGGCAGCCAAGCCTGGAGGTGC  949

seq1  AGCCTGTATTCGCATGGAAGGAAGACTGGGGAAGATGGCAGACAGCTTCA  999
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  AGCCTGTATTCGCATGGAAGG-AGACTGGGGAAGATGGCAGACAGC-TCA  997

seq1  CACCCCCTTGGAAAGAGGAATACTAAAGAAGTGTGTGGCTGCACAGCAGA  1049
      ||| ||||||| |||||| ||||||||| |||||   ||||| ||||   
seq2  CACTCCCTTGG-AAGAGG-ATACTAAAGGAGTGTTGTGCTGCCCAGC---  1042

seq1  GAAATAAAGCAAACAGTC-TCAAAAA-GCTGGACCTCGAGGATTTATATC  1097
       ||| | ||| ||||||| ||||||| |||||||||||||||||   |||
seq2  -AAAAATAGC-AACAGTCTTCAAAAAGGCTGGACCTCGAGGATT--AATC  1088

seq1  AATC  1101
      ||||
seq2  AATC  1092