BAC Information

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BAC

Clone NameB6Ng01-170J23
Chromosome11 (Build37)
Map Location 38,005,082 - 38,200,526
singlet/doubletdoublet
Overlap geneLOC276941
Upstream geneLOC100039148
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170J23.bB6Ng01-170J23.g
ACCDH961287DH961288
length1,066286
definitionDH961287|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J23, 5' end.DH961288|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,199,452 - 38,200,526)(38,005,082 - 38,005,365)
sequence
gaattctgtgcagtaatctggcatagatataatttccctaaaatagaaat
tctacccacatatttgctcaccaagtgtttgagttcatttctgcatggca
aggaagaaaataagatttttttgtgttgtgtcatggtaaatgaataaata
gtttttctattcattagagtggacataatagaataattatatattcatgg
tggtcagttttctataaatattggaatccagtaattgctataaaactgca
tgttatttattcatttggagacttaaaggaacatgcatagcatgaaatat
ttctataaataaaatatacacttgtgttacttgttttgacctttgagctg
ccataaaatcctctttgttttcttcttgttaatatttgatatattcacca
tcctgaagtagacactgtttcaaatacaatgtacatatatgcacaatcct
tttatggcagctctttctctcccagatggtaaagatattgaattttcctt
tctctcttttgttttcctcccttaaatatgtaggaaaacaaaagaaaaat
gcccatactcgttctcccacttttataatattttagcctgtcttgtggct
attgtcactagccagtatgagaattgagaagatgtagggtggtgagaact
cctcagcttatgctttcccaaatcaggatgaatacagctgaataaactga
tgggacaagcctcagaaggcatctttctcacattttacctgaagcctgtt
tccataaagatctaatgttcaaggtgtaggcttcagaaatgagaatgttt
catgcaacgtaggagccatctgtcagccctcaaaagcataacagctattt
tttctttgttcgcttttaggggagtagaggtttcattttagaagtctaaa
atgggatgtccttttctgagctcagatacctaattaatatcacattaatt
ttacgaaacgttttggagatcaagctgtgtggacctcagaagtcaagaag
gtcaaactagaagaatagaaaaccattgaccgtgtttaatcatcatttgc
tgaggaagcataaaga
tctcacccatctcaaaagctttgtgttatctttgactcctacctctcttt
gtggcccatgcctatcagttatgaaacaccatggggcagcctccactgct
cccgacttgctgttctggatccatgagctcagctgtatttcatttcctgt
ctatcaggtgcttgagatgagattgctaattctctttctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctc
tctctctctcgcgtgggtgctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38199452_38200526
seq2: B6Ng01-170J23.b_47_1112 (reverse)

seq1  TCTTTATGCTTTTCCCTCTGCAAATGATTGATTAAACCACGTCAATGGTT  50
      |||||||||||   |||| |||||||| |||||||||   ||||||||||
seq2  TCTTTATGCTT---CCTCAGCAAATGA-TGATTAAACACGGTCAATGGTT  46

seq1  TTCTATATCTCTAGTTTGACCCTTCTTGACTTCTGAGGTCCACAACAGCT  100
      ||||||   |||||||||| ||||||||||||||||||||||| ||||||
seq2  TTCTATTCTTCTAGTTTGA-CCTTCTTGACTTCTGAGGTCCAC-ACAGCT  94

seq1  TGATCTCCAAAAACGTTTCGTAAAATTAATGTGATATTAATTAGGTATCT  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCC-AAAACGTTTCGTAAAATTAATGTGATATTAATTAGGTATCT  143

seq1  GAGCTCAGAAAAGGACATCCCATTTTAGACTTCTAAAATGAAACCTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGAAAAGGACATCCCATTTTAGACTTCTAAAATGAAACCTCTAC  193

seq1  TCCCCTAAAAGCGAACAAAAGAAGAAAATAGCTGTTATGCTTTTGAGGGC  250
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TCCCCTAAAAGCGAAC-AAAGAA-AAAATAGCTGTTATGCTTTTGAGGGC  241

seq1  TGACAGATGGCTCCTACGTTGCATGAAACATTCTCATTTCTGAAGCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATGGCTCCTACGTTGCATGAAACATTCTCATTTCTGAAGCCTAC  291

seq1  ACCTTGAACATTAGATCTTTATGGAAACAGGCTTCAGGTAAAATGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAACATTAGATCTTTATGGAAACAGGCTTCAGGTAAAATGTGAGA  341

seq1  AAGATGCCTTCTGAGGCTTGTCCCATCAGTTTATTCAGCTGTATTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCTTCTGAGGCTTGTCCCATCAGTTTATTCAGCTGTATTCATCC  391

seq1  TGATTTGGGAAAGCATAAGCTGAGGAGTTCTCACCACCCTACATCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGGAAAGCATAAGCTGAGGAGTTCTCACCACCCTACATCTTCTC  441

seq1  AATTCTCATACTGGCTAGTGACAATAGCCACAAGACAGGCTAAAATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCATACTGGCTAGTGACAATAGCCACAAGACAGGCTAAAATATTA  491

seq1  TAAAAGTGGGAGAACGAGTATGGGCATTTTTCTTTTGTTTTCCTACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGGGAGAACGAGTATGGGCATTTTTCTTTTGTTTTCCTACATAT  541

seq1  TTAAGGGAGGAAAACAAAAGAGAGAAAGGAAAATTCAATATCTTTACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGAGGAAAACAAAAGAGAGAAAGGAAAATTCAATATCTTTACCAT  591

seq1  CTGGGAGAGAAAGAGCTGCCATAAAAGGATTGTGCATATATGTACATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAGAAAGAGCTGCCATAAAAGGATTGTGCATATATGTACATTGT  641

seq1  ATTTGAAACAGTGTCTACTTCAGGATGGTGAATATATCAAATATTAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACAGTGTCTACTTCAGGATGGTGAATATATCAAATATTAACAA  691

seq1  GAAGAAAACAAAGAGGATTTTATGGCAGCTCAAAGGTCAAAACAAGTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACAAAGAGGATTTTATGGCAGCTCAAAGGTCAAAACAAGTAAC  741

seq1  ACAAGTGTATATTTTATTTATAGAAATATTTCATGCTATGCATGTTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTATATTTTATTTATAGAAATATTTCATGCTATGCATGTTCCTT  791

seq1  TAAGTCTCCAAATGAATAAATAACATGCAGTTTTATAGCAATTACTGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCCAAATGAATAAATAACATGCAGTTTTATAGCAATTACTGGAT  841

seq1  TCCAATATTTATAGAAAACTGACCACCATGAATATATAATTATTCTATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATTTATAGAAAACTGACCACCATGAATATATAATTATTCTATTA  891

seq1  TGTCCACTCTAATGAATAGAAAAACTATTTATTCATTTACCATGACACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTCTAATGAATAGAAAAACTATTTATTCATTTACCATGACACAA  941

seq1  CACAAAAAAATCTTATTTTCTTCCTTGCCATGCAGAAATGAACTCAAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAAATCTTATTTTCTTCCTTGCCATGCAGAAATGAACTCAAACA  991

seq1  CTTGGTGAGCAAATATGTGGGTAGAATTTCTATTTTAGGGAAATTATATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGAGCAAATATGTGGGTAGAATTTCTATTTTAGGGAAATTATATC  1041

seq1  TATGCCAGATTACTGCACAGAATTC  1075
      |||||||||||||||||||||||||
seq2  TATGCCAGATTACTGCACAGAATTC  1066

seq1: chr11_38005082_38005365
seq2: B6Ng01-170J23.g_67_358

seq1  GAATTCTCTCACCCATCTCAAAAGCTTTGTGTTATCTTTGACTCCTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACCCATCTCAAAAGCTTTGTGTTATCTTTGACTCCTACCT  50

seq1  CTCTTTGTGGCCCATGCCTATCAGTTATGAAACACCATGGGGCAGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTGGCCCATGCCTATCAGTTATGAAACACCATGGGGCAGCCTCC  100

seq1  ACTGCTCCCGACTTGCTGTTCTGGATCCATGAGCTCAGCTGTATTTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCCGACTTGCTGTTCTGGATCCATGAGCTCAGCTGTATTTCATT  150

seq1  TCCTGTCTATCAGGTGCTTGAGATGAGATTGCTAATTCTCTTTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTATCAGGTGCTTGAGATGAGATTGCTAATTCTCTTTCTCTCTC  200

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCC  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  250

seq1  TCTCCCTCTCCCTCTC--------TCTCTCTCTCTCTCTCTC  284
      |||| ||||| |||||         |||||||||||||||||
seq2  TCTCTCTCTCTCTCTCGCGTGGGTGCTCTCTCTCTCTCTCTC  292