BAC Information

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BAC

Clone NameB6Ng01-170P04
Chromosome11 (Build37)
Map Location 83,976,173 - 84,115,235
singlet/doubletdoublet
Overlap geneOTTMUSG00000000997, Acaca
Upstream geneSlfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l
Downstream geneLOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P04.bB6Ng01-170P04.g
ACCDH961535DH961536
length1,1841,104
definitionDH961535|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P04, 5' end.DH961536|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,114,048 - 84,115,235)(83,976,173 - 83,977,285)
sequence
gaattccaatgtctgtggtaaagagagtgagcttgttagcggttcagaag
cctagcccaattctgacacacacccagggcctggctcccgacatgtgtac
cttagctccgacagcatctcccagccacagtgtttattcatgggcactca
gagtctatccccaagtatcaattttactctctaagctcctgatttctttt
cctaaagccctagggttctctctaagctgctcatacttctccactgactc
ctgcttcctatctgaagttattgattgatgtatacctgcactctgctgga
tttcctgacatcaataacacaagcgagttgtatagtccacaacatttcct
aaagcatttcagaaaaatcttagctgtttagcttgcagggtaggctctct
agcttctctatagactagacaagtatgaggggaaacaaaataccaaatgc
cttgagtttaggaagccctttctagaacacaaaatgttacctgctcattc
ttataaatgagcagtacttgaatagtaagcttaattattttaactgttac
aataaacaaatagcaacaacaaaaacagtaaaaattttctcagaagaacc
aagacttcctaacacccttgcaatcttgctgagttgcacagaaggaatct
gtgatgaaacattcgtctacaatcagcattctgagtgacaccatgaatgc
aggctcagtttctggttatgacgtcagtgtaaactaaagtctggatgcct
actattagctgagcttcccttccaagaaaagccttaatctcacaaatata
aaaatttaattcggttaaatgggagagcaaaaagaatgcttagcatttgt
ttacgtctgctcttagaattaacatggctctacaaatgcatcttaaacaa
taaatcactgggcttccaaactgaggtttcctgatagcaggccctgtaac
catgctcagtaggaaccaagtgcacagtcctgctttcctactcactgggg
actgtgcaggaaagactgctgagttcctactgcttaatcaacaggcatgg
acatgctcgtctccgaggctgcacctggaaacttctaaagcagagggttt
caaaaagaagaaacttaccttagagcgttaaataaataaaaactcatgcc
cgtacgttaaggggttgaaccctcatctagccct
gaattcactttcttgaaaaatagcaggtgcataagaggaatatgtaagga
catcgtttgtattagcaagagaatagaaagacccaaaattcccatcagtg
gtgaactaggggactaaactgcgatgtagtagatcaccgttcagaggaat
gaagcagggctgcttagcatgttcaaggccttgaactcagtatctgaaac
ccaactacatgtgagtcacattggtggataaggacatgggacaaacccac
gcatgtggggaaagtaaggtacattgtatgtctgtgcttttcacacacgc
agaggagctgcggtggtggctcatgcctgccattccagcacttcggaggt
acggggaggggtttcaggagatcaaggctagccctggtacatagcaaatt
aaaggacatctggactatatgagactttgtctccaaagaggggtattggg
ggggagaaaagatatacacacctatatgtgctttctttggaagaaaatac
agtaatagtagttccttctatcccaagggagaggactggagggctgagag
acaggaacaggaaagaggactgcctttcactataaatatgctctgttcgt
aaattcactgtaaaaaataaacaaaatttataaaatattgttgtttttta
aaaattttttggaactcactatgtagacatggctagccccagactcacag
agatctgcctgcctctgtctccgagtgctggaattcagccatatacccct
tacctggcccacaaactattgttaaaagaagatccacccactgatgtggt
agcattcacttataatcctaccattcaggaggcagaagcaaatagctttg
ctggaaatttgaggctagcctggtctacattagcagttctaggctagcag
ggatatatagtgagatctgtatttaaaaaaaattagatctaggcggggcg
tggtggcgcacactttaatcccagcactcgggaggcaaaggcaggtggac
ttctgagtcgaggtccagtcctgtctataagtgagttcatgatagcctgg
gcttacaaagaaaccctgtcctcataaaacatagaaaaaaaaattatatc
ttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_84114048_84115235
seq2: B6Ng01-170P04.b_46_1229 (reverse)

seq1  AGGGCTAGATGAGGG-TCAACCCTCTAACGTACGGGCATGAGTTTTTAAT  49
      ||||||||||||||| |||||||  |||||||||||||||||||||||  
seq2  AGGGCTAGATGAGGGTTCAACCCCTTAACGTACGGGCATGAGTTTTTA--  48

seq1  TTTATCTAACGCTCTAAGGTAAGTGTCTTCTTTTTGAAACACTCTGCTTT  99
      ||||| |||||||||||||||||| ||||||||||||||| |||||||||
seq2  TTTATTTAACGCTCTAAGGTAAGTTTCTTCTTTTTGAAACCCTCTGCTTT  98

seq1  AGAAGTCTC--AGTGCAG-CTCTGAGACGAGCATGTCCATTGCCTTGTTG  146
      |||||| ||   |||||| ||| |||||||||||||||| |||| |||||
seq2  AGAAGTTTCCAGGTGCAGCCTCGGAGACGAGCATGTCCA-TGCC-TGTTG  146

seq1  ATTAAGCAGTAGGAACTCAGCAGTCCTTTCCCCTGCACAGTCCCCAGTGA  196
      ||||||||||||||||||||||||| ||   |||||||||||||||||||
seq2  ATTAAGCAGTAGGAACTCAGCAGTCTTT---CCTGCACAGTCCCCAGTGA  193

seq1  GTAGGAAAGCAGGACTGGTGCACTTGGTTCCTACTGAGCATGGTTACAGG  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTAGGAAAGCAGGACT-GTGCACTTGGTTCCTACTGAGCATGGTTACAGG  242

seq1  GCCTGCTATCAGGAAACCTCAGTTTGGAAGGCCAGTGATTTATTGTTTAA  296
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCTGCTATCAGGAAACCTCAGTTTGGAAGCCCAGTGATTTATTGTTTAA  292

seq1  GATGCATTTGTAGAGCCATGTTAATTCTAAGAGCAGACGTAAACAAATGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTTGTAGAGCCATGTTAATTCTAAGAGCAGACGTAAACAAATGC  342

seq1  TAAGCATTCTTTTTGCTCTCCCATTTAACCGAATTAAATTTTTATATTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTCTTTTTGCTCTCCCATTTAACCGAATTAAATTTTTATATTTG  392

seq1  TGAGATTAAGGCTTTTCTTGGAAGGGAAGCTCAGCTAATAGTAGGCATCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAAGGCTTTTCTTGGAAGGGAAGCTCAGCTAATAGTAGGCATCC  442

seq1  AGACTTTAGTTTACACTGACGTCATAACCAGAAACTGAGCCTGCATTCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTAGTTTACACTGACGTCATAACCAGAAACTGAGCCTGCATTCAT  492

seq1  GGTGTCACTCAGAATGCTGATTGTAGACGAATGTTTCATCACAGATTCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCACTCAGAATGCTGATTGTAGACGAATGTTTCATCACAGATTCCT  542

seq1  TCTGTGCAACTCAGCAAGATTGCAAGGGTGTTAGGAAGTCTTGGTTCTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAACTCAGCAAGATTGCAAGGGTGTTAGGAAGTCTTGGTTCTTC  592

seq1  TGAGAAAATTTTTACTGTTTTTGTTGTTGCTATTTGTTTATTGTAACAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATTTTTACTGTTTTTGTTGTTGCTATTTGTTTATTGTAACAGT  642

seq1  TAAAATAATTAAGCTTACTATTCAAGTACTGCTCATTTATAAGAATGAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATTAAGCTTACTATTCAAGTACTGCTCATTTATAAGAATGAGC  692

seq1  AGGTAACATTTTGTGTTCTAGAAAGGGCTTCCTAAACTCAAGGCATTTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACATTTTGTGTTCTAGAAAGGGCTTCCTAAACTCAAGGCATTTGG  742

seq1  TATTTTGTTTCCCCTCATACTTGTCTAGTCTATAGAGAAGCTAGAGAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTCCCCTCATACTTGTCTAGTCTATAGAGAAGCTAGAGAGCC  792

seq1  TACCCTGCAAGCTAAACAGCTAAGATTTTTCTGAAATGCTTTAGGAAATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGCAAGCTAAACAGCTAAGATTTTTCTGAAATGCTTTAGGAAATG  842

seq1  TTGTGGACTATACAACTCGCTTGTGTTATTGATGTCAGGAAATCCAGCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGACTATACAACTCGCTTGTGTTATTGATGTCAGGAAATCCAGCAG  892

seq1  AGTGCAGGTATACATCAATCAATAACTTCAGATAGGAAGCAGGAGTCAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGTATACATCAATCAATAACTTCAGATAGGAAGCAGGAGTCAGT  942

seq1  GGAGAAGTATGAGCAGCTTAGAGAGAACCCTAGGGCTTTAGGAAAAGAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGTATGAGCAGCTTAGAGAGAACCCTAGGGCTTTAGGAAAAGAAA  992

seq1  TCAGGAGCTTAGAGAGTAAAATTGATACTTGGGGATAGACTCTGAGTGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCTTAGAGAGTAAAATTGATACTTGGGGATAGACTCTGAGTGCC  1042

seq1  CATGAATAAACACTGTGGCTGGGAGATGCTGTCGGAGCTAAGGTACACAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAAACACTGTGGCTGGGAGATGCTGTCGGAGCTAAGGTACACAT  1092

seq1  GTCGGGAGCCAGGCCCTGGGTGTGTGTCAGAATTGGGCTAGGCTTCTGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGAGCCAGGCCCTGGGTGTGTGTCAGAATTGGGCTAGGCTTCTGAA  1142

seq1  CCGCTAACAAGCTCACTCTCTTTACCACAGACATTGGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTAACAAGCTCACTCTCTTTACCACAGACATTGGAATTC  1184

seq1: chr11_83976173_83977285
seq2: B6Ng01-170P04.g_67_1170

seq1  GAATTCACTTTCTTGAAAAATAGCAGGTGCATAAGAGGAATATGTAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCTTGAAAAATAGCAGGTGCATAAGAGGAATATGTAAGGA  50

seq1  CATCGTTTGTATTAGCAAGAGAATAGAAAGACCCAAAATTCCCATCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTTGTATTAGCAAGAGAATAGAAAGACCCAAAATTCCCATCAGTG  100

seq1  GTGAACTAGGGGACTAAACTGCGATGTAGTAGATCACCGTTCAGAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTAGGGGACTAAACTGCGATGTAGTAGATCACCGTTCAGAGGAAT  150

seq1  GAAGCAGGGCTGCTTAGCATGTTCAAGGCCTTGAACTCAGTATCTGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGCTGCTTAGCATGTTCAAGGCCTTGAACTCAGTATCTGAAAC  200

seq1  CCAACTACATGTGAGTCACATTGGTGGATAAGGACATGGGACAAACCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTACATGTGAGTCACATTGGTGGATAAGGACATGGGACAAACCCAC  250

seq1  GCATGTGGGGAAAGTAAGGTACATTGTATGTCTGTGCTTTTCACACACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGGGAAAGTAAGGTACATTGTATGTCTGTGCTTTTCACACACGC  300

seq1  AGAGGAGCTGCGGTGGTGGCTCATGCCTGCCATTCCAGCACTTCGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTGCGGTGGTGGCTCATGCCTGCCATTCCAGCACTTCGGAGGT  350

seq1  ACGGGGAGGGGTTTCAGGAGATCAAGGCTAGCCCTGGTACATAGCAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGAGGGGTTTCAGGAGATCAAGGCTAGCCCTGGTACATAGCAAATT  400

seq1  AAAGGACATCTGGACTATATGAGACTTTGTCTCCAAAGAGGGGTATTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACATCTGGACTATATGAGACTTTGTCTCCAAAGAGGGGTATTGGG  450

seq1  GGGGAGAAAAGATATACACACCTATATGTGCTTTCTTTGGAAGAAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAAAGATATACACACCTATATGTGCTTTCTTTGGAAGAAAATAC  500

seq1  AGTAATAGTAGTTCCTTCTATCCCAAGGGAGAGGACTGGAGGGCTGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAGTAGTTCCTTCTATCCCAAGGGAGAGGACTGGAGGGCTGAGAG  550

seq1  ACAGGAACAGGAAAGAGGACTGCCTTTCACTATAAATATGCTCTGTTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACAGGAAAGAGGACTGCCTTTCACTATAAATATGCTCTGTTCGT  600

seq1  AAATTCACTGTAAAAAATAAACAAAATTTATAAAATATTGTTGTTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACTGTAAAAAATAAACAAAATTTATAAAATATTGTTGTTTTTTA  650

seq1  AAAATTTTTTGGAACTCACTATGTAGACATGGCTAGCCCCAGACTCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTTGGAACTCACTATGTAGACATGGCTAGCCCCAGACTCACAG  700

seq1  AGATCTGCCTGCCTCTGTCTCCGAGTGCTGGAATTCAAGCCATATACCCC  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGATCTGCCTGCCTCTGTCTCCGAGTGCTGGAATTC-AGCCATATACCCC  749

seq1  TTACCTGGCCCACAAACTATTGTTAAAAGAAGATCCACCCACTGATGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGCCCACAAACTATTGTTAAAAGAAGATCCACCCACTGATGTGG  799

seq1  TAGCATTCACTTATAATCCTACCATTCAGGAGGCAGAAGCAAATAGC-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGCATTCACTTATAATCCTACCATTCAGGAGGCAGAAGCAAATAGCTTT  849

seq1  GCTGTAAATTTGAGGCTAGCCTGGTCTACATTAGCAGTTCTAGGCTAGCA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTGGAAATTTGAGGCTAGCCTGGTCTACATTAGCAGTTCTAGGCTAGC-  898

seq1  AGGGATATATAGTGAGAACCTGTATTTAAAAAAAATTAGATCTAGGCCGG  949
      |||||||||||||||| | |||||||||||||||||||||||||||| ||
seq2  AGGGATATATAGTGAG-ATCTGTATTTAAAAAAAATTAGATCTAGGCGGG  947

seq1  GCGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGT  999
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GCGTGGTGGCGCACA-CTTTAATCCCAGCACTCGGGAGGCAAAGGCAGGT  996

seq1  GGACTTCTGAGTTCGAGG-CCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  1048
      ||||||||||| |||||| |||| |  |||||  ||||||||| || || 
seq2  GGACTTCTGAG-TCGAGGTCCAGTCCTGTCTA-TAAGTGAGTT-CATGAT  1043

seq1  AGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAACCAAAAAAAAAAA  1098
      |||| ||||| |||| ||||||||||||   | |||||   | | |||||
seq2  AGCCTGGGCT-TACAAAGAAACCCTGTCCTCATAAAAC---ATAGAAAAA  1089

seq1  AAAATTAGATCTTAT  1113
      ||||||| |||||||
seq2  AAAATTATATCTTAT  1104