BAC Information

Click to search

BAC

Clone NameB6Ng01-171D01
Chromosome11 (Build37)
Map Location 6,062,573 - 6,062,658
singlet/doubletsinglet
Overlap geneNudcd3
Upstream geneKremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156
Downstream geneLOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171D01.bB6Ng01-171D01.g
ACCGA000139GA000140
length876945
definitionB6Ng01-171D01.b B6Ng01-171D01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcccactattattgtgtgaggtgcaatgtgtgctttgagcttta
ctaaagtttctttaatgaatgtggctacccttgaatttggagtatagata
ttcagaattgagagttcctcttggaagattttacctttgatgaatatgaa
gggcccctccttgtccttttttgataacttggggttggaagtcgattttt
ttcgatattagaatggctactccaacttgtttcttcagacgatttgcttt
gaaattgttttccagccttttactctgaggtagtgtctgtctgtttccct
aaggtagggttcttgtaagcagcaaagtgttggttcctgtttgtgtagcc
agtctgttagtctatgtctttttattgggcaattgagtctattgatatta
agagatattaaggaaaagtaattgttgcttcctattacttttgtcgttag
agttggcattctgttcttgtggctgtcttcttttaggtttgttgaaggaa
tactttcttgctttttctagtacctggtttctgtccttgtattgtttttt
tctgttattatcctttgaagggctggattcatgggaagatattgtgtgaa
tttggttttgtcatggaatactttggtttctccatctatagtaattgaga
gtttggctgggtatagtagcctgggctggcatctgtgttctcttagtgtc
tgtataacatctgtccaggctcttctggctttcatagtctctggtgaaaa
agtctggagtgattctaataggcctgcctttatatgttacttgacctttt
tcccttactgattttaatatttctatcctttattttagtgcattttgttg
ttttgattattatgtgtcaggaggaa
gaattcactctgtagaccaggctggccttgaactcagaaatctgctgcct
gcctctgcctccctagggctgggatttaaggtgtgcaccaccaagccctg
caatcttttctactctgtaggctcccatttgttcttattgacagtgtcct
ttgcctaacaaaagctttttcagatttgagagctcccattaattagttgt
ttatcttagttcctgggttgttggagttctgttcaggaagttgtctcctg
taccaatgagttcaaggctattccctgttttctcttctattacatttaat
gtattcagttttatggtgagatctttgatccacttgaacatgagcgatct
atttgcattcttctacatgtagacattcagttaggccagcatcatttgtt
gaaggtgctttcttttttccatttaatggtttcagtttctttttcaaaga
aggtgtgtgagtttatttttgggtctttgattaaatttcattgatcatct
tggttttttatgccaataccacgtggtttttatcactattgctctgtagt
acagcttgaaacagggatgctgatgcctccagaagttcttttattgtaca
aaattttttaactatcctgagttttttgtttttccatataaagttgagaa
tcactctttcaaagtctatgaagaattgtgttgaattttaatggaattgc
attaaacgtgtagattgttttttttggtaaactggatgtttttactatga
taatcttactgatctatgagcataggagagcttcccatcttctgaggtct
tcttcaatttcttttcttcagagacttgaagttcttgtcatacaggcctt
tcatgtgcttggttagatttagaccaaggtattttataatagtttatgac
ttattgttaatggagtcatttcctaatttctctctcggcctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6062573_6062658
seq2: B6Ng01-171D01.g_67_155 (reverse)

seq1  TGGTGGTGCACGCCTTTAATCCCAGCCCTCGGGAGGCAGAGGCAG---GC  47
      ||||||||||| |||| |||||||||||| |||||||||||||||   ||
seq2  TGGTGGTGCACACCTTAAATCCCAGCCCTAGGGAGGCAGAGGCAGGCAGC  50

seq1  AGATTTTTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGA  86
      |||||| ||||||  ||||||||||||||||||||||||
seq2  AGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGA  89