BAC Information

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BAC

Clone NameB6Ng01-171O21
Chromosome11 (Build37)
Map Location 68,467,771 - 68,611,677
singlet/doubletdoublet
Overlap geneMyh10
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
Downstream geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171O21.bB6Ng01-171O21.g
ACCGA000683GA000684
length6101,032
definitionB6Ng01-171O21.b B6Ng01-171O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,611,069 - 68,611,677)(68,467,771 - 68,468,765)
sequence
gaattctgtgggcacacagtgagcctacaataccacgtgctggaggaatg
cctgagcacacccactgtgctgagttgccagggttctgggtgtaacgcct
tgtgagttgttggagcactaactatggactgagaacccattggaccgtgt
cattcttcttgtccatatagggtagaggaagaaactacgtgccttcggta
gcaagttgttagaaacattttcccaaacttactgagtttggaccaggggc
tgggtttctctgagccattggctgaggttagagatgaggctacggaactt
ggctttaatctgtctttccacttactagctgggtgactaagcttatgtgc
tgagccttagtttccttatcctttaaatgacgatgacaggttatgcgaca
gtgctgaagttaggactctcagagagagtattaaacagcagaaactgacc
ctcactaacatgctaacaccatcaccctgtacagggaagggtggcctgta
gctaagtagaaaagagaaaggtgtgtgtgtgtgtgtgtgtgcgtgcgcga
gcacaggggcaaaacagcaggaaggcaaggaaatctgtggggagggagga
gggaaggtgg
gaattccctgtcgtttgtgacagcaggaacagaagtggacaggctcatgc
taagtgaagtaagccagacagagaaagacaggcatctccgttcccactta
tacatggaatctaaaacattccagcttacagaagaagagaatgatgaaaa
tggagactgtcagaggccagggcttgggagacatgggaaaatacagcttc
tcctagttagctccaactgtcaccttgacaaggaccagagttagctgagt
gagtctccattaggagattccctctatcagtatgacctatgactgcatct
gggaaggattgtcttgattgattagttgatggagggaagtccagcctacc
tttggtggtgctatgctgaggcaggtgggattgagctgtccaagaaaact
agctgaggaactaaagagatggctcagtggttagggtcatttgttgctct
tacagacatcccaggtttggttcccagcattcacatggtagcttatagct
gttcataacgccagttctggggagatttcccacaatacctccctttgagg
tagctgggttgagttttaacaaggaacacactaaaggccacagaacaaca
caataaagatgcagggctgctgggagaaaggtactgtgcccccacttaga
tttgaatttcaaataaacaacaagaacacgatagcataggtatatcctaa
attcctcttggttccaaatgctgtacagacgtagttatattaaacatgtt
ccttagctggagtttaaacttaactgggcattctctattttatctagaaa
gggtctccacaattgtctttcagttacttcaaatttttggtagtctatcc
aagtgtgcctccaattctgctcatgaggaagaaggttggcaattcaagct
cgtaaaaagagaacctgcaattcagtcactagaatttgccaggtctttaa
gaagatgaaggaacagccaagcatgatttacaccctttaatccgagcact
taagagagccagaagtaggtgggatcttctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68611069_68611677
seq2: B6Ng01-171O21.b_42_651 (reverse)

seq1  CCACCTT-CCTCCTCCCTCCCCACAGATTTCCTTGCCTTCCTGCTGTTTT  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCCCTCCTCCCTCCCCACAGATTTCCTTGCCTTCCTGCTGTTTT  50

seq1  GCCCCTGTGCTCGCGCACGCACACACACACACACACACACCTTTCTCTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTGCTCGCGCACGCACACACACACACACACACACCTTTCTCTTT  100

seq1  TCTACTTAGCTACAGGCCACCCTTCCCTGTACAGGGTGATGGTGTTAGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTAGCTACAGGCCACCCTTCCCTGTACAGGGTGATGGTGTTAGCA  150

seq1  TGTTAGTGAGGGTCAGTTTCTGCTGTTTAATACTCTCTCTGAGAGTCCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTGAGGGTCAGTTTCTGCTGTTTAATACTCTCTCTGAGAGTCCTA  200

seq1  ACTTCAGCACTGTCGCATAACCTGTCATCGTCATTTAAAGGATAAGGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCACTGTCGCATAACCTGTCATCGTCATTTAAAGGATAAGGAAA  250

seq1  CTAAGGCTCAGCACATAAGCTTAGTCACCCAGCTAGTAAGTGGAAAGACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTCAGCACATAAGCTTAGTCACCCAGCTAGTAAGTGGAAAGACA  300

seq1  GATTAAAGCCAAGTTCCGTAGCCTCATCTCTAACCTCAGCCAATGGCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGCCAAGTTCCGTAGCCTCATCTCTAACCTCAGCCAATGGCTCA  350

seq1  GAGAAACCCAGCCCCTGGTCCAAACTCAGTAAGTTTGGGAAAATGTTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCAGCCCCTGGTCCAAACTCAGTAAGTTTGGGAAAATGTTTCT  400

seq1  AACAACTTGCTACCGAAGGCACGTAGTTTCTTCCTCTACCCTATATGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTGCTACCGAAGGCACGTAGTTTCTTCCTCTACCCTATATGGAC  450

seq1  AAGAAGAATGACACGGTCCAATGGGTTCTCAGTCCATAGTTAGTGCTCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAATGACACGGTCCAATGGGTTCTCAGTCCATAGTTAGTGCTCCA  500

seq1  ACAACTCACAAGGCGTTACACCCAGAACCCTGGCAACTCAGCACAGTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCACAAGGCGTTACACCCAGAACCCTGGCAACTCAGCACAGTGGG  550

seq1  TGTGCTCAGGCATTCCTCCAGCACGTGGTATTGTAGGCTCACTGTGTGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAGGCATTCCTCCAGCACGTGGTATTGTAGGCTCACTGTGTGCC  600

seq1  CACAGAATTC  609
      ||||||||||
seq2  CACAGAATTC  610

seq1: chr11_68467771_68468765
seq2: B6Ng01-171O21.g_94_1100

seq1  GGAACAGAAGTGGACAGGCTCATGCTAAGTGAAGTAAGCCAGACAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAAGTGGACAGGCTCATGCTAAGTGAAGTAAGCCAGACAGAGAA  50

seq1  AGACAGGCATCTCCGTTCCCACTTATACATGGAATCTAAAACATTCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCATCTCCGTTCCCACTTATACATGGAATCTAAAACATTCCAGC  100

seq1  TTACAGAAGAAGAGAATGATGAAAATGGAGACTGTCAGAGGCCAGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAGAAGAGAATGATGAAAATGGAGACTGTCAGAGGCCAGGGCTT  150

seq1  GGGAGACATGGGAAAATACAGCTTCTCCTAGTTAGCTCCAACTGTCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACATGGGAAAATACAGCTTCTCCTAGTTAGCTCCAACTGTCACCT  200

seq1  TGACAAGGACCAGAGTTAGCTGAGTGAGTCTCCATTAGGAGATTCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGACCAGAGTTAGCTGAGTGAGTCTCCATTAGGAGATTCCCTCT  250

seq1  ATCAGTATGACCTATGACTGCATCTGGGAAGGATTGTCTTGATTGATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATGACCTATGACTGCATCTGGGAAGGATTGTCTTGATTGATTAG  300

seq1  TTGATGGAGGGAAGTCCAGCCTACCTTTGGTGGTGCTATGCTGAGGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAGGGAAGTCCAGCCTACCTTTGGTGGTGCTATGCTGAGGCAGG  350

seq1  TGGGATTGAGCTGTCCAAGAAAACTAGCTGAGGAACTAAAGAGATGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGAGCTGTCCAAGAAAACTAGCTGAGGAACTAAAGAGATGGCTC  400

seq1  AGTGGTTAGGGTCATTTGTTGCTCTTACAGACATCCCAGGTTTGGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAGGGTCATTTGTTGCTCTTACAGACATCCCAGGTTTGGTTCCC  450

seq1  AGCATTCACATGGTAGCTTATAGCTGTTCATAACGCCAGTTCTGGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCACATGGTAGCTTATAGCTGTTCATAACGCCAGTTCTGGGGAGA  500

seq1  TTTCCCACAATACCTCCCTTTGAGGTAGCTGGGTTGAGTTTTAACAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACAATACCTCCCTTTGAGGTAGCTGGGTTGAGTTTTAACAAGGA  550

seq1  ACACACTAAAGGCCACAGAACAACACAATAAAGATGCAGGGCTGCTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAAAGGCCACAGAACAACACAATAAAGATGCAGGGCTGCTGGGA  600

seq1  GAAAGGTACTGTGCCCCCACTTAGATTTGAATTTCAAATAAACAACAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTACTGTGCCCCCACTTAGATTTGAATTTCAAATAAACAACAAGA  650

seq1  ACACGATAGCATAGGTATATCCTAAATTCCTCTTGGTTCCAAATGCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGATAGCATAGGTATATCCTAAATTCCTCTTGGTTCCAAATGCTGTA  700

seq1  CAGACGTAGTTATATTAAACATGTTCCTTAGCTGGAGTTTAAACTTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGTAGTTATATTAAACATGTTCCTTAGCTGGAGTTTAAACTTAACT  750

seq1  GGGCATTCTCTATTTTATCTAG-AAGGGTCTCCAC-ATTGTCTTTCAGTT  798
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  GGGCATTCTCTATTTTATCTAGAAAGGGTCTCCACAATTGTCTTTCAGTT  800

seq1  ACTTCAAATTTTTGGTAGTCTATCCAAGTGTGCCTCC-ATTCTGCTCATG  847
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTTCAAATTTTTGGTAGTCTATCCAAGTGTGCCTCCAATTCTGCTCATG  850

seq1  AGGAAG-AGGTTGGC-ATTCAAGC-CGTAAAGAGAG-ACCTGCAATTCAG  893
      |||||| |||||||| |||||||| |||||| |||| |||||||||||||
seq2  AGGAAGAAGGTTGGCAATTCAAGCTCGTAAAAAGAGAACCTGCAATTCAG  900

seq1  TCACTAGATTTTGCCAGGGTCTTTAAAGAGATG-AGGAACAGCCAAGCAT  942
      |||||||| ||||||| |||||||||  ||||| ||||||||||||||||
seq2  TCACTAGAATTTGCCA-GGTCTTTAAGAAGATGAAGGAACAGCCAAGCAT  949

seq1  GATTTACA-CCTTTAATCCCAGCACTTA--GGAGGCAGAGGTAGGT-GGA  988
      |||||||| |||||||||| ||||||||   ||| |||| |||||| |||
seq2  GATTTACACCCTTTAATCCGAGCACTTAAGAGAGCCAGAAGTAGGTGGGA  999

seq1  TC-TCTGT  995
      || |||||
seq2  TCTTCTGT  1007