BAC Information

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BAC

Clone NameB6Ng01-172E18
Chromosome11 (Build37)
Map Location 12,666,968 - 12,668,099
singlet/doubletsinglet
Overlap genenone
Upstream geneIkzf1, Fignl1, Ddc, Grb10, Cobl
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172E18.bB6Ng01-172E18.g
ACCGA000952GA000953
length1,2551,137
definitionB6Ng01-172E18.b B6Ng01-172E18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttcactctgtaccccatattttaataggggttatttggt
tttctagagtctaacttcttgagttctttgtatatattggatattaggcc
cctattggatttaggactggtaaagatcttttcccaatctgttggttgcc
tttttgccttattgacagtgtcctttgccttacagaagctttgcaatttt
atgaggtcctatttgttgattcttgacctaacagcacaaggcattggtgc
tctgttcaggatttttttcctgtgcccatatgtttgaggcttttccccac
tttctcttctattttcagtgtatctggttttatgtggagttcctcgatcc
acttagacttgagctttgtacgaggagataagaatggatcaattcacaat
ctactacaggataaccgccaattgatccatcaccatttgttgaaaatgct
atctgttttctactggatggttttagctcctttgtcaaagaccaagtgac
cttaggtgtgtgggtccatttcgggtcttcaattcccaggatcacttttg
attatcccacaaatcaactttttttttctttattttcaccctttcgctgt
taacaaaagatagcaaacacatttttcctaaaattgcaaatgaattcaga
gatcaatctgcctttgtaagcacagacaacaagctacctgggtgtgatcc
agctctaagatcacccattccattatgcctaggcctaaatttgctctgtc
ccagactgaccttgaactcagcatcttcctgtctctgtatctttctctca
aggtagctcattaatccagctacctgtgttctttgaagcccctcatataa
ttcatattgtatccttatatttggtatgggttgagaaattatatagtttt
aaatttcatgttttcagagttcttttcccacagtgttaagggatgccctg
aaggtcataatgttctacttctttttgctgagacattaagcatcccctca
ctcccagactcatgttgtgtctgattatcatggagtcatttacctgacaa
gggagaccactttcataaccttgacaaggagaatgctttctctgaatgag
gaacaggaagttaaaaaatatttttcatatatattaaacaggcctcgaat
cagcaaccattcacacctctatggagactaggccttgcttgattctctct
ctaggaaagggaatacttgatgtcattgatgccactacctctctcatgag
tatga
gaattcactcaagagccaagtgcatgagctctaccatgcaggagctcaac
cactgagtggcagttttagtctccaaagcacctggcaacaacaaagggag
gatgctttcttaagcatttcagacgaaagaacatcaggttgtggtggtga
ggatgctaggcaggcaagataagaatcagagatcaccattttaccccccc
caaatgtttatattctgcacttacacctaaataaatgtgattcttgcaag
aaaggttatagatctatcattatgttaaaacaatattctatgatgctaat
cctgagtagggagaaaaacaggttatcagttttttccttacttcttgtct
tttgcaaactatttctcggagtcttggggagtaggggcaacattgatgta
tcagtggcattccagtaatagaccaggtgtcctagacaggtagggaaggt
ccactgccaggtcttccctggaagtggcaatttttccagccatgggagag
tagctgattcctgctaattccattgctggctgttagtgccattatgtgac
tggaatttttaagtgactttctttaatttgacttagcagcctttggcgtc
aaatgcaaccacaggcagcatctacatttcaccatctaactgtggctggc
ccatgttaatggcaatcttctaaagccctgaggatcaggtacaattgctc
atttacttaaataacctttaacaaatgttttgttttaagtaagtttattg
ggtacacttctcctttctgtttctccctgggaagaaacacaattgatttc
ttctagaaatggaaagttcaatacaaaacctccttcctttgccctgagaa
agtgttccacaaaattcttcttggtgttatataaagctcactcactttgt
atctccctcttcctccttatcagtgcacccttttcttccctggtcctttc
tatttcccctttatttctcttccataagaagagtttgtgattcattattt
ttcttctacgttcacctccaagtcctctgtgactattggccagatgaccc
agtccattatcattcttcaatttatgaggtgctaagaactatgtagtgag
aatttcttagccttgcattgtctacctataatgtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_12666968_12668099
seq2: B6Ng01-172E18.g_63_1199

seq1  GAATTCACTCAAGAGCCAAGTGCATGAGCTCTACCATGCAGGAGCTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAAGAGCCAAGTGCATGAGCTCTACCATGCAGGAGCTCAAC  50

seq1  CACTGAGTGGCAGTTTTAGTCTCCAAAGCACCTGGCAACAACAAAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTGGCAGTTTTAGTCTCCAAAGCACCTGGCAACAACAAAGGGAG  100

seq1  GATGCTTTCTTAAGCATTTCAGACGAAAGAACATCAGGTTGTGGTGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTCTTAAGCATTTCAGACGAAAGAACATCAGGTTGTGGTGGTGA  150

seq1  GGATGCTAGGCAGGCAAGATAAGAATCAGAGATCACCATTTTACCCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTAGGCAGGCAAGATAAGAATCAGAGATCACCATTTTACCCCCCC  200

seq1  CAAATGTTTATATTCTGCACTTACACCTAAATAAATGTGATTCTTGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTATATTCTGCACTTACACCTAAATAAATGTGATTCTTGCAAG  250

seq1  AAAGGTTATAGATCTATCATTATGTTAAAACAATATTCTATGATGCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTATAGATCTATCATTATGTTAAAACAATATTCTATGATGCTAAT  300

seq1  CCTGAGTAGGGAGAAAAACAGGTTATCAGTTTTTTCCTTACTTCTTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTAGGGAGAAAAACAGGTTATCAGTTTTTTCCTTACTTCTTGTCT  350

seq1  TTTGCAAACTATTTCTCGGAGTCTTGGGGAGTAGGGGCAACATTGATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAACTATTTCTCGGAGTCTTGGGGAGTAGGGGCAACATTGATGTA  400

seq1  TCAGTGGCATTCCAGTAATAGACCAGGTGTCCTAGACAGGTAGGGAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCATTCCAGTAATAGACCAGGTGTCCTAGACAGGTAGGGAAGGT  450

seq1  CCACTGCCAGGTCTTCCCTGGAAGTGGCAATTTTTCCAGCCATGGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCAGGTCTTCCCTGGAAGTGGCAATTTTTCCAGCCATGGGAGAG  500

seq1  TAGCTGATTCCTGCTAATTCCATTGCTGGCTGTTAGTGCCATTATGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATTCCTGCTAATTCCATTGCTGGCTGTTAGTGCCATTATGTGAC  550

seq1  TGGAATTTTTAAGTGACTTTCTTTAATTTGACTTAGCAGCCTTTGGCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTTAAGTGACTTTCTTTAATTTGACTTAGCAGCCTTTGGCGTC  600

seq1  AAATGCAACCACAGGCAGCATCTACATTTCACCATCTAACTGTGGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAACCACAGGCAGCATCTACATTTCACCATCTAACTGTGGCTGGC  650

seq1  CCATGTTAATGGCAATCTTCTAAAGCCCTGAGGATCAGGTACAATTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTAATGGCAATCTTCTAAAGCCCTGAGGATCAGGTACAATTGCTC  700

seq1  ATTTACTTAAATAACCTTTAACAAATGTTTTGTTTTAAGTAAGTTTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAAATAACCTTTAACAAATGTTTTGTTTTAAGTAAGTTTATTG  750

seq1  GGTACACTTCTCCTTTCTGTTTCTCCCTGGGAAGAAACACAATTGATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACTTCTCCTTTCTGTTTCTCCCTGGGAAGAAACACAATTGATTTC  800

seq1  TTCTAGAAATGGAAAGTTCAATACAAAACCTCCTTCCTTTGCCCTGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAATGGAAAGTTCAATACAAAACCTCCTTCCTTTGCCCTGAGAA  850

seq1  AGTGTTCCACAAAATTCTTCTTGGTGTTATATAAAGCTCACTCACTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCACAAAATTCTTCTTGGTGTTATATAAAGCTCACTCACTTTGT  900

seq1  ATCTCCCTCTT-CTCCTTATCAGTGCACCC-TTTCTTCCTTGGTCCTTTC  948
      ||||||||||| |||||||||||||||||| |||||||| ||||||||||
seq2  ATCTCCCTCTTCCTCCTTATCAGTGCACCCTTTTCTTCCCTGGTCCTTTC  950

seq1  TATTTCCCCTTTATTTCTCTTCCATAAGAAGAGTTTGTGATTCATTATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCCTTTATTTCTCTTCCATAAGAAGAGTTTGTGATTCATTATTT  1000

seq1  T--CTCTACGTTCA-CTCCAAGTCCTCTGTGACTA-TGGCAAGATGACCC  1044
      |   |||||||||| |||||||||||||||||||| |||| |||||||||
seq2  TTCTTCTACGTTCACCTCCAAGTCCTCTGTGACTATTGGCCAGATGACCC  1050

seq1  AGGTCCATTAATCAT--CTCAATTTATGAGGTGCTAAGAAATTAATGTTA  1092
      | ||||||| |||||   |||||||||||||||||||||| |  ||| ||
seq2  A-GTCCATT-ATCATTCTTCAATTTATGAGGTGCTAAGAACT--ATG-TA  1095

seq1  GTGAGA--TTC-TAGCCTTTGCCATTGTCTA-CTAATATGTGAA  1132
      ||||||  ||| |||||||   ||||||||| |||  |||||||
seq2  GTGAGAATTTCTTAGCCTT--GCATTGTCTACCTATAATGTGAA  1137