BAC Information

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BAC

Clone NameB6Ng01-172N06
Chromosome11 (Build37)
Map Location 120,777,153 - 120,882,172
singlet/doubletdoublet
Overlap geneCcdc57, Slc16a3, Csnk1d
Upstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, LOC100043454
Downstream geneCd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172N06.bB6Ng01-172N06.g
ACCGA001341GA001342
length1,043972
definitionB6Ng01-172N06.b B6Ng01-172N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,777,153 - 120,778,186)(120,881,206 - 120,882,172)
sequence
gaattcaatgaatggtaatttccaccatggcaacaatccatgggtccagg
aactgagaggtagcaataaaaacagcattactcatcaccacctctagtaa
gccatttacctcctgctcccagggtgcaccacaagtcttgattccagagt
gggaaactcttctacaggcactacaatggttccaccagacctctcaggca
cgttgaccactttgggaccctccagcccctaggtcaataggtgaggaaag
gaactacggtgctggctgaggagatcggcccagactcccagggtgaccgg
atgattaccccacagtggaagtcaggaagatcctgagacatcgagtatta
ccatgttttgtgattatggtcagtggggccagacatggtggaatataaat
atttatttcctttctttttaaaataagggaacacaatattttaaaaattc
aaatagctgggcagtggtggcgcacacctttaaccccagcacttgggagg
cagaggcaggcgaatttctgagtctacagagtgagttccaggacacagct
agagctacacagagaaaccctgtctcaaaaaacaaaaaaacaaaaacaaa
aacaaaaacaaaaaaaatcaaatatatttctaatgaaaattatgtcaatt
tattaagcattcagactgtcaggctttaaaataccaagtttgttcatgtt
cttttagagcaaaatctactgttgttttccacttgtttttatgtgagact
gacatttcagttccaccgtcagaatgacatcatcaaggttgctcaagaca
caagttttccaatcacggaagaagcccatccccccatcccccagctaaag
gcggaagtgtgttagttgtgacatcacttccttttctgccctgcaaaacc
caccactttcagctctttgtccttaacctcaccccccactgcttccagca
agatctttctcacctggagggtgagcaagaagtttctgcagtggcagcaa
ctcctcaggggtcaatttaactttattagggtgtctattatgt
gaattcaatgccctctctcaaattccataggtaccaagcatacacatggt
gtgtaatatatgtgcaggcaaaacattcacacataaaatgaatagatcta
attttaaaattagatgtgtgtgtgtgtgtgtgcaggctagctcacactac
agtggtcactcaggtcccaggtctcagatttcaggccctaggtcccaggt
ggcctgagccccagaaggacctgccagcgggttacaagctctacaggccc
acaatagccacattataaggcagccagccatcttatctctgccggattat
ggagcacagactgctatgctgtttgggaaacagctcgcagaggctagggt
gccaggctagctttgaccccgtagaatgaacctcatgaggagcctatcca
gaccccaaacctcaacttctctctaaggccaaatccagggtatagggccc
atcacagaactccataccctctcaggctgaacttctggttcttgagggta
gaccttacctcatcctgactcttgggggtatgtgttctctctctctctct
cttgcagcctaacttattgtacctcccctcctggcctggcacctgtacct
gggctgtctgagatacctccctacaggacactaactgctacaagaccatt
gctctgcttgttcacctgtccttgtagccacaccaccatcatgagcgcgg
gacttcctgttctgctgagctttgggcccagccaccccacctgcatcctc
caggcccagaggttaccttgacctcactctaggagtggcctgaggcagga
cttcttcagggactcaagcccacagaggtgattttgcctagtgggaagtg
gacattccctcatctccctttccccagatgtcaccagacttccttgggaa
gtagggagtcagtcagtcctaagggtacagcaggaagaactgccaacacc
acaaatgattaatccaggctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120777153_120778186
seq2: B6Ng01-172N06.b_42_1084

seq1  GAATTCAATGAATGGTAATTTCCACCATGGCAACAATCCATGGGTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAATGGTAATTTCCACCATGGCAACAATCCATGGGTCCAGG  50

seq1  AACTGAGAGGTAGCAATAAAAACAGCATTACTCATCACCACCTCTAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAGGTAGCAATAAAAACAGCATTACTCATCACCACCTCTAGTAA  100

seq1  GCCATTTACCTCCTGCTCCCAGGGTGCACCACAAGTCTTGATTCCAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTACCTCCTGCTCCCAGGGTGCACCACAAGTCTTGATTCCAGAGT  150

seq1  GGGAAACTCTTCTACAGGCACTACAATGGTTCCACCAGACCTCTCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTCTTCTACAGGCACTACAATGGTTCCACCAGACCTCTCAGGCA  200

seq1  CGTTGACCACTTTGGGACCCTCCAGCCCCTAGGTCAATAGGTGAGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGACCACTTTGGGACCCTCCAGCCCCTAGGTCAATAGGTGAGGAAAG  250

seq1  GAACTACGGTGCTGGCTGAGGAGATCGGCCCAGACTCCCAGGGTGACCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACGGTGCTGGCTGAGGAGATCGGCCCAGACTCCCAGGGTGACCGG  300

seq1  ATGATTACCCCACAGTGGAAGTCAGGAAGATCCTGAGACATCGAGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTACCCCACAGTGGAAGTCAGGAAGATCCTGAGACATCGAGTATTA  350

seq1  CCATGTTTTGTGATTATGGTCAGTGGGGCCAGACATGGTGGAATATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTTGTGATTATGGTCAGTGGGGCCAGACATGGTGGAATATAAAT  400

seq1  ATTTATTTCCTTTCTTTTTAAAATAAGGGAACACAATATTTTAAAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCCTTTCTTTTTAAAATAAGGGAACACAATATTTTAAAAATTC  450

seq1  AAATAGCTGGGCAGTGGTGGCGCACACCTTTAACCCCAGCACTTGGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTGGGCAGTGGTGGCGCACACCTTTAACCCCAGCACTTGGGAGG  500

seq1  CAGAGGCAGGCGAATTTCTGAGTCTACAGAGTGAGTTCCAGGACACAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCGAATTTCTGAGTCTACAGAGTGAGTTCCAGGACACAGCT  550

seq1  AGAGCTACACAGAGAAACCCTGTCTCAAAAAACAAAAAAACAAAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTACACAGAGAAACCCTGTCTCAAAAAACAAAAAAACAAAAACAAA  600

seq1  AACAAAAACAAAAAAAATCAAATATATTTCTAATGAAAATTATGTCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAAAAATCAAATATATTTCTAATGAAAATTATGTCAATT  650

seq1  TATTAAGCATTCAGACTGTCAGGCTTTAAAATACCAAGTTTGTTCATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCATTCAGACTGTCAGGCTTTAAAATACCAAGTTTGTTCATGTT  700

seq1  CTTTTAGAGCAAAATCTACTGTTGTTTTCCACTTGTTTTTATGTGAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAGCAAAATCTACTGTTGTTTTCCACTTGTTTTTATGTGAGACT  750

seq1  GACATTTCAGTTCCACCGTCAGAATGACATCATCAAGGTTGCTCAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCAGTTCCACCGTCAGAATGACATCATCAAGGTTGCTCAAGACA  800

seq1  CAAG-TTTCCAATCACGGAAGAAGCCCATCCCCCCATCCCCCAGCT-AAG  848
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAGTTTTCCAATCACGGAAGAAGCCCATCCCCCCATCCCCCAGCTAAAG  850

seq1  GCGGAAGTGTGTTAGTTGTGACATCACTTCC-TTTCTGCCCTGC-AAACC  896
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  GCGGAAGTGTGTTAGTTGTGACATCACTTCCTTTTCTGCCCTGCAAAACC  900

seq1  CACCACTTTCAGCTCTTTGTCCTTAACCTCACCCCCCACTGCTTCCAGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTTCAGCTCTTTGTCCTTAACCTCACCCCCCACTGCTTCCAGCA  950

seq1  AGATCTTTCTCACCTGGAGGGTGAGGCAGAAGTTTCTGCAGTGGCAGCAA  996
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  AGATCTTTCTCACCTGGAGGGTGAGCAAGAAGTTTCTGCAGTGGCAGCAA  1000

seq1  CT-CTCAGGGGTCAATTTAAC-TTAT--AGGTGTCTA-TATGT  1034
      || |||||||||||||||||| ||||   |||||||| |||||
seq2  CTCCTCAGGGGTCAATTTAACTTTATTAGGGTGTCTATTATGT  1043

seq1: chr11_120881206_120882172
seq2: B6Ng01-172N06.g_67_1037 (reverse)

seq1  CAGCCTGGATAAATCA-TTGT-GTGTTGCCAGTTCTTCCTGCTGTAACCT  48
      |||||||||| ||||| |||| |||||| ||||||||||||||||| |||
seq2  CAGCCTGGATTAATCATTTGTGGTGTTGGCAGTTCTTCCTGCTGTACCCT  50

seq1  TAGGACTGACTGACTCCCTTCTTCCCAAGGGAGTCTGGTGACATCTGGGG  98
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  TAGGACTGACTGACTCCCTACTTCCCAAGGAAGTCTGGTGACATCTGGGG  100

seq1  -AAGGGAGATGA-GGAATGTCCACTTCCCACTAGGCAAAATCACCTCTGT  146
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGATGAGGGAATGTCCACTTCCCACTAGGCAAAATCACCTCTGT  150

seq1  GGGCTTGAGTCCCTGAAGAAGTCCTGCCTCAGGCCACTCCTAGAGTGAGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGAGTCCCTGAAGAAGTCCTGCCTCAGGCCACTCCTAGAGTGAGG  200

seq1  TCAAGGTAACCTCTGGGCCTGGAGGATGCAGGTGGGGTGGCTGGGCCCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTAACCTCTGGGCCTGGAGGATGCAGGTGGGGTGGCTGGGCCCAA  250

seq1  AGCTCAGCAGAACAGGAAGTCCCGCGCTCATGATGGTGGTGTGGCTACAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCAGAACAGGAAGTCCCGCGCTCATGATGGTGGTGTGGCTACAA  300

seq1  GGACAGGTGAACAAGCAGAGCAATGGTCTTGTAGCAGTTAGTGTCCTGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTGAACAAGCAGAGCAATGGTCTTGTAGCAGTTAGTGTCCTGTA  350

seq1  GGGAGGTATCTCAGACAGCCCAGGTACAGGTGCCAGGCCAGGAGGGGAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTATCTCAGACAGCCCAGGTACAGGTGCCAGGCCAGGAGGGGAGG  400

seq1  TACAATAAGTTAGGCTGCAAGAGAGAGAGAGAGAGAACACATACCCCCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAGTTAGGCTGCAAGAGAGAGAGAGAGAGAACACATACCCCCAA  450

seq1  GAGTCAGGATGAGGTAAGGTCTACCCTCAAGAACCAGAAGTTCAGCCTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGATGAGGTAAGGTCTACCCTCAAGAACCAGAAGTTCAGCCTGA  500

seq1  GAGGGTATGGAGTTCTGTGATGGGCCCTATACCCTGGATTTGGCCTTAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTATGGAGTTCTGTGATGGGCCCTATACCCTGGATTTGGCCTTAGA  550

seq1  GAGAAGTTGAGGTTTGGGGTCTGGATAGGCTCCTCATGAGGTTCATTCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTGAGGTTTGGGGTCTGGATAGGCTCCTCATGAGGTTCATTCTA  600

seq1  CGGGGTCAAAGCTAGCCTGGCACCCTAGCCTCTGCGAGCTGTTTCCCAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCAAAGCTAGCCTGGCACCCTAGCCTCTGCGAGCTGTTTCCCAAA  650

seq1  CAGCATAGCAGTCTGTGCTCCATAATCCGGCAGAGATAAGATGGCTGGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGCAGTCTGTGCTCCATAATCCGGCAGAGATAAGATGGCTGGCT  700

seq1  GCCTTATAATGTGGCTATTGTGGGCCTGTAGAGCTTGTAACCCGCTGGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATAATGTGGCTATTGTGGGCCTGTAGAGCTTGTAACCCGCTGGCA  750

seq1  GGTCCTTCTGGGGCTCAGGCCACCTGGGACCTAGGGCCTGAAATCTGAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCTGGGGCTCAGGCCACCTGGGACCTAGGGCCTGAAATCTGAGA  800

seq1  CCTGGGACCTGAGTGACCACTGTAGTGTGAGCTAGCCTGCACACACACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACCTGAGTGACCACTGTAGTGTGAGCTAGCCTGCACACACACAC  850

seq1  ACACACATCTAATTTTAAAATTAGATCTATTCATTTTATGTGTGAATGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATCTAATTTTAAAATTAGATCTATTCATTTTATGTGTGAATGTT  900

seq1  TTGCCTGCACATATATTACACACCATGTGTATGCTTGGTACCTATGGAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCACATATATTACACACCATGTGTATGCTTGGTACCTATGGAAT  950

seq1  TTGAGAGAGGGCATTGAATTC  967
      |||||||||||||||||||||
seq2  TTGAGAGAGGGCATTGAATTC  971