BAC Information

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BAC

Clone NameB6Ng01-173A20
Chromosome11 (Build37)
Map Location 26,886,658 - 27,056,364
singlet/doubletdoublet
Overlap geneLOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173A20.bB6Ng01-173A20.g
ACCGA001505GA001506
length1,0901,100
definitionB6Ng01-173A20.b B6Ng01-173A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,886,658 - 26,887,743)(27,055,270 - 27,056,364)
sequence
gaattcttattgggatagagaaacacccaaagtatttacagtaatttctg
gctttctctttccatcctcataggtttttcttcatctactgaattttact
taccagcagctcacagatcttcaggctgctttccttttggacattgtttg
tatttaagtagtcatgacatgccatgaatactacaagagattactaacaa
acctctgagtatcttatttattgattctaaagcttatgtctatccatatg
ctttagaaagcatcattagaaagcaccaactcggggattaaaacctcatg
ggttcccatccatgctttaagctttcctttcactccatctcacacagctc
tactcttcagcttgcttcagctgtttagctttctctgacatttctcacaa
tctgccacctccatggtttcctcactttgtcttccttatgcccctggaat
tgaacagctcctgtgttcttgtaagctgcccaatgactatttcctgatga
ctaccatggaccatctccacctccttcatgagtcccatcggttcctaggt
tctatgaccatttcttttagataagcaatgcctttgctgtcctctatcta
ccataaattcctctaaccaagaactaattgttgtctttttttcctgcttc
attttaaagcttaatgattccttattatggaataggggtattattaaata
gaattctttataatctaggaagaaataatgctcctgcaaacaagcacaac
catcaccaccacctgacctaataggaaagagaaaactctgaccgttgatt
ttttcctgagaataacatttctgacttccatcacatggaagtgtctggaa
agtcacaaacttgttagacagattctttaaatcttgcatattcttatgtg
tacctttagttcatattttttatgatgcacatacaccatgattctaatca
ttctgatagtttgggtaatggaaaatttagaatgaaacttgttaacataa
aaaggttttctcattactacccacattttcttatcccttgagttttggtg
tcatccaatgataatgccaaccactactttcttttctgcc

gaattccttactggctgtattgagaccctttgggttgggagtcttgggat
tcttggtattctcagacaatgaaccaagatgttgtgcctacttcatgagc
cccaaaagatcaccaaggagctgttttctgtgaaattacacaagggtctt
tattcaagcttgagctcaggatacactgttgtcactgatgcagcaggaca
ggagggtgaagccccaggcccagtttcaagtaagcaaacaagcaaggggt
tatccagcttggtacacatctgattggagggctattatggaatttgttgc
actttacaatgattggctggtgctgggagctaacccataaatatttataa
atacttatttttaggtacaactataacttctgttttcctcctgattggtg
gttattagggagtaacctagagaccagtgctaggtgctggcttgttagtt
aactcaaattcaacctcaggtcaggttctgtaagacagagtctgaactta
agatggaattggtctggtctctcagatgagagctgaaaaggcaagtcaat
gtaagtagttaatccttaacatgagaataaaaggtagctgtgtttttcca
tgttcagaatatactctgtcttactggagatacagaagaaaaagatttca
aagaaaaagttctaggggaatttacatttatgcctacagaagcaagaata
aaatgatgtggctttcccccaggcagagagaaagatatgggttactgaat
ggaattagttggaaagtgggggataaaaaagaaaatgcaatcatcttcat
gtaatctttcaatgtgagttctgggctggaaatcaaatttattacctact
ccccacatcttaaatccatattggttgagaaagggcatgtgtggttaaaa
cttatgtgtaactttctttattatatatgaaatacattaagtgcattctt
ggaatgatcttatgaaatagagaaccctcaattatactgggggagatcca
ggtaaacattacaaatgagtaatgtgctgtagtgaagaagagaacagagt
tccctagagatatgttggaagccaattgcctatgatggatgtatgaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26886658_26887743
seq2: B6Ng01-173A20.b_45_1134

seq1  GAATTCTTATTGGGATAGAGAAACACCCAAAGTATTTACAGTAATTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGGGATAGAGAAACACCCAAAGTATTTACAGTAATTTCTG  50

seq1  GCTTTCTCTTTCCATCCTCATAGGTTTTTCTTCATCTACTGAATTTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTTTCCATCCTCATAGGTTTTTCTTCATCTACTGAATTTTACT  100

seq1  TACCAGCAGCTCACAGATCTTCAGGCTGCTTTCCTTTTGGACATTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCAGCTCACAGATCTTCAGGCTGCTTTCCTTTTGGACATTGTTTG  150

seq1  TATTTAAGTAGTCATGACATGCCATGAATACTACAAGAGATTACTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGTAGTCATGACATGCCATGAATACTACAAGAGATTACTAACAA  200

seq1  ACCTCTGAGTATCTTATTTATTGATTCTAAAGCTTATGTCTATCCATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGTATCTTATTTATTGATTCTAAAGCTTATGTCTATCCATATG  250

seq1  CTTTAGAAAGCATCATTAGAAAGCACCAACTCGGGGATTAAAACCTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAGCATCATTAGAAAGCACCAACTCGGGGATTAAAACCTCATG  300

seq1  GGTTCCCATCCATGCTTTAAGCTTTCCTTTCACTCCATCTCACACAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCATCCATGCTTTAAGCTTTCCTTTCACTCCATCTCACACAGCTC  350

seq1  TACTCTTCAGCTTGCTTCAGCTGTTTAGCTTTCTCTGACATTTCTCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCAGCTTGCTTCAGCTGTTTAGCTTTCTCTGACATTTCTCACAA  400

seq1  TCTGCCACCTCCATGGTTTCCTCACTTTGTCTTCCTTATGCCCCTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACCTCCATGGTTTCCTCACTTTGTCTTCCTTATGCCCCTGGAAT  450

seq1  TGAACAGCTCCTGTGTTCTTGTAAGCTGCCCAATGACTATTTCCTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCTCCTGTGTTCTTGTAAGCTGCCCAATGACTATTTCCTGATGA  500

seq1  CTACCATGGACCATCTCCACCTCCTTCATGAGTCCCATCGGTTCCTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATGGACCATCTCCACCTCCTTCATGAGTCCCATCGGTTCCTAGGT  550

seq1  TCTATGACCATTTCTTTTAGATAAGCAATGCCTTTGCTGTCCTCTATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACCATTTCTTTTAGATAAGCAATGCCTTTGCTGTCCTCTATCTA  600

seq1  CCATAAATTCCTCTAACCAAGAACTAATTGTTGTCTTTTTTTCCTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATTCCTCTAACCAAGAACTAATTGTTGTCTTTTTTTCCTGCTTC  650

seq1  ATTTTAAAGCTTAATGATTCCTTATTATGGAATAGGGGTATTATTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCTTAATGATTCCTTATTATGGAATAGGGGTATTATTAAATA  700

seq1  GAATTCTTTATAATCTAGGAAGAAATAATGCTCCTGCAAACAAGCACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAATCTAGGAAGAAATAATGCTCCTGCAAACAAGCACAAC  750

seq1  CATCACCACCACCTGACCTAATAGG-AAGAGAAAACTCTGACCGTTGATT  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATCACCACCACCTGACCTAATAGGAAAGAGAAAACTCTGACCGTTGATT  800

seq1  TTTTCCTGAGAATAACATTTCTGACTTCCATCACATGGAAGTGTCTGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGAGAATAACATTTCTGACTTCCATCACATGGAAGTGTCTGGAA  850

seq1  AGTCACAAACTTGTTAGACAGATTCTTTAAATCTTGCATATTCTTATGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAACTTGTTAGACAGATTCTTTAAATCTTGCATATTCTTATGTG  900

seq1  TACC-TTAGTTCATATTTTTTTATGATGCACATACACCATGATTCTAATC  948
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  TACCTTTAGTTCATA-TTTTTTATGATGCACATACACCATGATTCTAATC  949

seq1  ATTCTGATAGTTTTGGTAATGGAAATTTTAGAATGAAACTTTGTAACAT-  997
      ||||||||||||| ||||||||||| |||||||||||||||  |||||| 
seq2  ATTCTGATAGTTTGGGTAATGGAAAATTTAGAATGAAACTTGTTAACATA  999

seq1  AAAAGGTTTTCTCATTAACTACCCACATTTTCTTATCCCTTGAGTTTT-G  1046
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  AAAAGGTTTTCTCATT-ACTACCCACATTTTCTTATCCCTTGAGTTTTGG  1048

seq1  TGTCATTCCATGATTAATGCC-ACCACTACTT--CTTTCTGCC  1086
      |||||| | |||| ||||||| ||||||||||   ||||||||
seq2  TGTCATCCAATGA-TAATGCCAACCACTACTTTCTTTTCTGCC  1090


seq1: chr11_27055270_27056364
seq2: B6Ng01-173A20.g_65_1164 (reverse)

seq1  AATTTCATACTTCACTCATAGGCATCTGCTTTCCAAC--ATCTCTAAGGA  48
      |||||||||| ||  |||||||||  ||  |||||||  ||||||| |||
seq2  AATTTCATACATCCATCATAGGCAATTGGCTTCCAACATATCTCTAGGGA  50

seq1  ACTCTGTTCTCT--CTCACTAACAGCACATTACCTCATTTGTATTGTTTA  96
      ||||||||||||   ||||| ||||||||||| |||||||||| ||||||
seq2  ACTCTGTTCTCTTCTTCACT-ACAGCACATTA-CTCATTTGTAATGTTTA  98

seq1  CCTTGATCT-CCCCAGTATAATTGAGGGTTCTCTATTTCATAAGATCATT  145
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATCTCCCCCAGTATAATTGAGGGTTCTCTATTTCATAAGATCATT  148

seq1  CCAAGAATGCACTTAATGTATTTCATATAT-ATAAAGAAAG-TACACAAT  193
      |||||||||||||||||||||||||||||| |||||||||| ||||| ||
seq2  CCAAGAATGCACTTAATGTATTTCATATATAATAAAGAAAGTTACAC-AT  197

seq1  AAGTTTTAACCACACATGCCCTTTCTCAACCAATATGGATTTAAGATGTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAACCACACATGCCCTTTCTCAACCAATATGGATTTAAGATGTG  247

seq1  GGGAGTAGGTAATAAATTTGATTTCCAG-CCAGAACTCACATTGAAAGAT  292
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGAGTAGGTAATAAATTTGATTTCCAGCCCAGAACTCACATTGAAAGAT  297

seq1  TACATGAAGATGATTGCATTTTCTTTTTTATCCCCCACTTTCCAACTAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAGATGATTGCATTTTCTTTTTTATCCCCCACTTTCCAACTAAT  347

seq1  TCCATTCAGTAACCCATATCTTTCTCTCTGCCTGGGGGAAAGCCACATCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCAGTAACCCATATCTTTCTCTCTGCCTGGGGGAAAGCCACATCA  397

seq1  TTTTATTCTTGCTTCTGTAGGCATAAATGTAAATTCCCCTAGAACTTTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTTGCTTCTGTAGGCATAAATGTAAATTCCCCTAGAACTTTTT  447

seq1  CTTTGAAATCTTTTTCTTCTGTATCTCCAGTAAGACAGAGTATATTCTGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATCTTTTTCTTCTGTATCTCCAGTAAGACAGAGTATATTCTGA  497

seq1  ACATGGAAAAACACAGCTACCTTTTATTCTCATGTTAAGGATTAACTACT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAAAACACAGCTACCTTTTATTCTCATGTTAAGGATTAACTACT  547

seq1  TACATTGACTTGCCTTTTCAGCTCTCATCTGAGAGACCAGACCAATTCCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGACTTGCCTTTTCAGCTCTCATCTGAGAGACCAGACCAATTCCA  597

seq1  TCTTAAGTTCAGACTCTGTCTTACAGAACCTGACCTGAGGTTGAATTTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTTCAGACTCTGTCTTACAGAACCTGACCTGAGGTTGAATTTGA  647

seq1  GTTAACTAACAAGCCAGCACCTAGCACTGGTCTCTAGGTTACTCCCTAAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTAACAAGCCAGCACCTAGCACTGGTCTCTAGGTTACTCCCTAAT  697

seq1  AACCACCAATCAGGAGGAAAACAGAAGTTATAGTTGTACCTAAAAATAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAATCAGGAGGAAAACAGAAGTTATAGTTGTACCTAAAAATAAG  747

seq1  TATTTATAAATATTTATGGGTTAGCTCCCAGCACCAGCCAATCATTGTAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAAATATTTATGGGTTAGCTCCCAGCACCAGCCAATCATTGTAA  797

seq1  AGTGCAACAAATTCCATAATAGCCCTCCAATCAGATGTGTACCAAGCTGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACAAATTCCATAATAGCCCTCCAATCAGATGTGTACCAAGCTGG  847

seq1  ATAACCCCTTGCTTGTTTGCTTACTTGAAACTGGGCCTGGGGCTTCACCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCTTGCTTGTTTGCTTACTTGAAACTGGGCCTGGGGCTTCACCC  897

seq1  TCCTGTCCTGCTGCATCAGTGACAACAGTGTATCCTGAGCTCAAGCTTGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCTGCTGCATCAGTGACAACAGTGTATCCTGAGCTCAAGCTTGA  947

seq1  ATAAAGACCCTTGTGTAATTTCACAGAAAACAGCTCCTTGGTGATCTTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACCCTTGTGTAATTTCACAGAAAACAGCTCCTTGGTGATCTTTT  997

seq1  GGGGCTCATGAAGTAGGCACAACATCTTGGTTCATTGTCTGAGAATACCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCATGAAGTAGGCACAACATCTTGGTTCATTGTCTGAGAATACCA  1047

seq1  AGAATCCCAAGACTCCCAACCCAAAGGGTCTCAATACAGCCAGTAAGGAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCAAGACTCCCAACCCAAAGGGTCTCAATACAGCCAGTAAGGAA  1097

seq1  TTC  1095
      |||
seq2  TTC  1100


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