BAC Information

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BAC

Clone NameB6Ng01-174G22
Chromosome11 (Build37)
Map Location 65,617,308 - 65,767,034
singlet/doubletdoublet
Overlap geneZkscan6, Dnahc9
Upstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4
Downstream geneGm879, LOC668323, A530088H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174G22.bB6Ng01-174G22.g
ACCGA002514GA002515
length1,1521,072
definitionB6Ng01-174G22.b B6Ng01-174G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,765,915 - 65,767,034)(65,617,308 - 65,618,353)
sequence
gaattctgcttttgggcttttcactctggactttctttcttctcccattt
tagtttcttgattcaaagtacaatgtatctaagggacttaagttcactca
ggggatgaagtgagctcttacagtctgaaaagaaaactcctcttgtactc
ttcttctacactaattcagtagctgttgcatgctccgttcatctggcctg
ggctggccccaaggagccatgaatggcactggttcctgtgcctgaattgc
tcatgttctcaccgtggctgtcatcctgctggccatttactttgtactgc
aggagaggccttcaagttaatttcaacaatactagctttatggatgtaat
attgcttctgcttcatgtgcttccaataggagttttaatgacactgttgc
actttaatgccctaacagcattttcttgtgtcctccttatcagtacactc
aattgcttcttactttgtctggtttcttacaaatgggctcatgggattct
ttgaacctctgaatccagcaggtttggggcgtttttctctagtctgctga
tggtttcattctctgccttctagaatataccatttccttgtttgttctgt
gggttggcatcctttctttttcttggttttcctctaggcaaattgatatt
acttccgtgtctgtcatcaagttgctgtgtgatgaccatcagcctgtctc
agagctggaaaactggagcacgggaactccaggcaatgcacgagcatttt
cccacatgtgcctctgtgctgtagaaagggctttttttttttaatcattg
tcttctgtttttttgtttgggttgttttttttttttttcagtcctctgaa
ttcccagagaaaagcaggagtaataacttaccagtatgattgccagattt
tcttgatacctttccacttacccccccaacttattctttctcccctcatc
acttcaaggcccttcagagcattctccacaccctccttctaaacacttgt
gccaatcttcctggcttctctcctcttctggggaatggcctggtttattt
gtacaaagaagtactgacccatagcatgtaggaatggtgatgatggtctt
gacctctgttgcagaacacttagtttctcgtttgttcagatgtctcttga
at

gaattctcttaaccactgagccagccaactctccagcccctcaggggtat
ggctttgaatagaagagtagataccaccgtacttgtctttggtttccgtg
acataagtagtgcctttattacctatacacttctgccatgaagtgctaac
ttgcctcaggatctgaagctaaaaggacaaaccatgatggaccaaaatca
acccaaactgcaaaccaactatttcttgggtatttattacatttgctgaa
aactcactaatattgcaaataatcacacctatttgtcttttgaagatcaa
ggtgaggtttgttttttttttttaaatgtgttttatgtatacatatgtgt
acatgtctgtttatgcataccattaagggtggcttcagagtacagagcat
cagatctccaagtgagtcactcaagattggtgcgaggatacaaactctgg
tattctgcaagagcagtatgtgttcttgaccactgagccatctctccggc
tctcatggatgaagctttaaaatcatgaattgtggttttgttccccagat
cagtaacaacagaactgcgttaaaacagttgtttaaaagatccagttgcc
ggcattgcctctgagatactctaatttggggagaggcataaaataaatat
ggcttttacatgctcccactctgtgctgcgtggccagaatgtagttagaa
caaggttctgtacttcttctgtacttttgttcaagcacgtcagtcagttt
aactattttaaagctaatctagtaattatcctgtcctctgttgcttatat
atctatgaaatatgcaagaaagccaaaaggacaaggttagaaattgaaaa
acacatatttattaaattaaaggttcttgtaaaatataacagacactggg
attttgagcaatgcctgttttgctaattctggaaatatggacacctgtta
aggcctccttctaaagtttagtttatttttggtggttttaacccattgtc
aagttaaatctactccaataataatatataataatatacaaacccacttt
cacaaaaaaccttgccaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_65765915_65767034
seq2: B6Ng01-174G22.b_43_1194 (reverse)

seq1  ATTCAA-AGACATCTGAACAAAAGA-AATATTAGTG-TCTGCCACATGAG  47
      |||||| ||||||||||||||| || ||  | |||| ||||| ||| |||
seq2  ATTCAAGAGACATCTGAACAAACGAGAAACTAAGTGTTCTGCAACA-GAG  49

seq1  GTCAAGA-CATCATTCACATTCCT-CATTCTCT-GGTCACTAC-TCTTTG  93
      ||||||| ||||||   ||||||| ||| || | ||||| ||| ||||||
seq2  GTCAAGACCATCATCACCATTCCTACATGCTATGGGTCAGTACTTCTTTG  99

seq1  TACAAATAAACCA-GCCATT-CCCAG-AGAGGAG-GAAG-CAGGGAGA-T  137
      ||||||||||||| |||||| ||||| ||||||| |||| |||| ||| |
seq2  TACAAATAAACCAGGCCATTCCCCAGAAGAGGAGAGAAGCCAGGAAGATT  149

seq1  GGCACAAGTG-TTAG-AGGA-GGTGTGGAGAATGCTCTG-AGGGCCTTGA  183
      |||||||||| |||| |||| |||||||||||||||||| ||||||||||
seq2  GGCACAAGTGTTTAGAAGGAGGGTGTGGAGAATGCTCTGAAGGGCCTTGA  199

seq1  GGTGATGAGGGGAGAAAGA--TAGT--GGGGGGTAAGTGG-AAGGTATC-  227
       ||||||||||||||||||   |||  ||||||||||||| |||||||| 
seq2  AGTGATGAGGGGAGAAAGAATAAGTTGGGGGGGTAAGTGGAAAGGTATCA  249

seq1  AGAAAATCTGGC-ATCATACTGGT-AGTTA-TACT-CTGCTTTTCTCTGG  273
      |||||||||||| ||||||||||| ||||| |||| ||||||||||||||
seq2  AGAAAATCTGGCAATCATACTGGTAAGTTATTACTCCTGCTTTTCTCTGG  299

seq1  GAATTCAGA-GACTG-AAAAAAAAAAAAACAACCCAA--CAAAAAACAGA  319
      ||||||||| ||||| |||||||||||||||||||||   ||||||||||
seq2  GAATTCAGAGGACTGAAAAAAAAAAAAAACAACCCAAACAAAAAAACAGA  349

seq1  AGACAATGATT-AAAAAAAAAAGCCCTTTCTACAGCACAGAGGCACATGT  368
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGATTAAAAAAAAAAAGCCCTTTCTACAGCACAGAGGCACATGT  399

seq1  GGGAAAATGCTCGTGCATTGCCTGGAGTTCCCGTGCTCCAG-TTTCCAGC  417
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGAAAATGCTCGTGCATTGCCTGGAGTTCCCGTGCTCCAGTTTTCCAGC  449

seq1  TCTGAGACAGGCTGATGGTCATCACACAGCAACTTGATGACAGACACGGA  467
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACAGGCTGATGGTCATCACACAGCAACTTGATGACAGACACGGA  499

seq1  AGTAATATCAATTTGCCTAGAGGAAAACCAAGAAAAAGAAAGGATGCCAA  517
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATCAATTTGCCTAGAGGAAAACCAAGAAAAAGAAAGGATGCCAA  549

seq1  CCCACAGAACAAACAAGGAAATGGTATATTCTAGAAGGCAGAGAATGAAA  567
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGAACAAACAAGGAAATGGTATATTCTAGAAGGCAGAGAATGAAA  599

seq1  CCATCAGCAGACTAGAGAAAAACGCCCCAAACCTGCTGGATTCAGAGGTT  617
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCAGACTAGAGAAAAACGCCCCAAACCTGCTGGATTCAGAGGTT  649

seq1  CAAAGAATCCCATGAGCCCATTTGTAAGAAACCAGACAAAGTAAGAAGCA  667
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATCCCATGAGCCCATTTGTAAGAAACCAGACAAAGTAAGAAGCA  699

seq1  ATTGAGTGTACTGATAAGGAGGACACAAGAAAATGCTGTTAGGGCATTAA  717
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGTACTGATAAGGAGGACACAAGAAAATGCTGTTAGGGCATTAA  749

seq1  AGTGCAACAGTGTCATTAAAACTCCTATTGGAAGCACATGAAGCAGAAGC  767
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACAGTGTCATTAAAACTCCTATTGGAAGCACATGAAGCAGAAGC  799

seq1  AATATTACATCCATAAAGCTAGTATTGTTGAAATTAACTTGAAGGCCTCT  817
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACATCCATAAAGCTAGTATTGTTGAAATTAACTTGAAGGCCTCT  849

seq1  CCTGCAGTACAAAGTAAATGGCCAGCAGGATGACAGCCACGGTGAGAACA  867
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGTACAAAGTAAATGGCCAGCAGGATGACAGCCACGGTGAGAACA  899

seq1  TGAGCAATTCAGGCACAGGAACCAGTGCCATTCATGGCTCCTTGGGGCCA  917
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATTCAGGCACAGGAACCAGTGCCATTCATGGCTCCTTGGGGCCA  949

seq1  GCCCAGGCCAGATGAACGGAGCATGCAACAGCTACTGAATTAGTGTAGAA  967
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCCAGATGAACGGAGCATGCAACAGCTACTGAATTAGTGTAGAA  999

seq1  GAAGAGTACAAGAGGAGTTTTCTTTTCAGACTGTAAGAGCTCACTTCATC  1017
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTACAAGAGGAGTTTTCTTTTCAGACTGTAAGAGCTCACTTCATC  1049

seq1  CCCTGAGTGAACTTAAGTCCCTTAGATACATTGTACTTTGAATCAAGAAA  1067
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTGAACTTAAGTCCCTTAGATACATTGTACTTTGAATCAAGAAA  1099

seq1  CTAAAATGGGAGAAGAAAGAAAGTCCAGAGTGAAAAGCCCAAAAGCAGAA  1117
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGGGAGAAGAAAGAAAGTCCAGAGTGAAAAGCCCAAAAGCAGAA  1149

seq1  TTC  1120
      |||
seq2  TTC  1152


seq1: chr11_65617308_65618353
seq2: B6Ng01-174G22.g_71_1142

seq1  GAATTCTCTTAACCACTGAGCCAGCCAACTCTCCAGCCCCTCAGGGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAACCACTGAGCCAGCCAACTCTCCAGCCCCTCAGGGGTAT  50

seq1  GGCTTTGAATAGAAGAGTAGATACCACCGTACTTGTCTTTGGTTTCCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGAATAGAAGAGTAGATACCACCGTACTTGTCTTTGGTTTCCGTG  100

seq1  ACATAAGTAGTGCCTTTATTACCTATACACTTCTGCCATGAAGTGCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGTAGTGCCTTTATTACCTATACACTTCTGCCATGAAGTGCTAAC  150

seq1  TTGCCTCAGGATCTGAAGCTAAAAGGACAAACCATGATGGACCAAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCAGGATCTGAAGCTAAAAGGACAAACCATGATGGACCAAAATCA  200

seq1  ACCCAAACTGCAAACCAACTATTTCTTGGGTATTTATTACATTTGCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACTGCAAACCAACTATTTCTTGGGTATTTATTACATTTGCTGAA  250

seq1  AACTCACTAATATTGCAAATAATCACACCTATTTGTCTTTTGAAGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTAATATTGCAAATAATCACACCTATTTGTCTTTTGAAGATCAA  300

seq1  GGTGAGGTTTGTTTTTTTTTTTTAAATGTGTTTTATGTATACATATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGTTTGTTTTTTTTTTTTAAATGTGTTTTATGTATACATATGTGT  350

seq1  ACATGTCTGTTTATGCATACCATTAAGGGTGGCTTCAGAGTACAGAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTGTTTATGCATACCATTAAGGGTGGCTTCAGAGTACAGAGCAT  400

seq1  CAGATCTCCAAGTGAGTCACTCAAGATTGGTGCGAGGATACAAACTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCCAAGTGAGTCACTCAAGATTGGTGCGAGGATACAAACTCTGG  450

seq1  TATTCTGCAAGAGCAGTATGTGTTCTTGACCACTGAGCCATCTCTCCGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCAAGAGCAGTATGTGTTCTTGACCACTGAGCCATCTCTCCGGC  500

seq1  TCTCATGGATGAAGCTTTAAAATCATGAATTGTGGTTTTGTTCCCCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGGATGAAGCTTTAAAATCATGAATTGTGGTTTTGTTCCCCAGAT  550

seq1  CAGTAACAACAGAACTGCGTTAAAACAGTTGTTTAAAAGATCCAGTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACAACAGAACTGCGTTAAAACAGTTGTTTAAAAGATCCAGTTGCC  600

seq1  GGCATTGCCTCTGAGATACTCTAATTTGGGGAGAGGCATAAA--TAATAT  648
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  GGCATTGCCTCTGAGATACTCTAATTTGGGGAGAGGCATAAAATAAATAT  650

seq1  GGCTTTTACATGCTCCCACTCTGTGCTGCGTGGCCAGAATGTAGTTAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTACATGCTCCCACTCTGTGCTGCGTGGCCAGAATGTAGTTAGAA  700

seq1  CAAGGTTCTGTACTTCTTCTGTACTTTTTGTTCAAGCACGTCAGTCAG-T  747
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  CAAGGTTCTGTACTTCTTCTGTAC-TTTTGTTCAAGCACGTCAGTCAGTT  749

seq1  TAACTATTTTAAAGCTAATCTAGTAATTATCCTGTCCTCTG-TGCTTATA  796
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAACTATTTTAAAGCTAATCTAGTAATTATCCTGTCCTCTGTTGCTTATA  799

seq1  TATCTATGAAATATGCAAGAAAG-CAAAAGGACAAGGTAAGAA--TGAAA  843
      ||||||||||||||||||||||| |||||||||||||| ||||  |||||
seq2  TATCTATGAAATATGCAAGAAAGCCAAAAGGACAAGGTTAGAAATTGAAA  849

seq1  AACACATATTTATTAAAT--AAAGTTCTTGTTAAAATATAACAGACACTG  891
      ||||||||||||||||||  || ||||||| |||||||||||||||||||
seq2  AACACATATTTATTAAATTAAAGGTTCTTG-TAAAATATAACAGACACTG  898

seq1  G--ATTTGAGCAAATGCTGTTTTGCT-ATTCTGG-AATATGGACA-CTGT  936
      |   |||||||||   |||||||||| ||||||| |||||||||| ||||
seq2  GGATTTTGAGCAATGCCTGTTTTGCTAATTCTGGAAATATGGACACCTGT  948

seq1  TAAGGCCTCCTTCT-AAGTTTAGTTTATTTTTGGTGGTTTTAA-CCATTG  984
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  TAAGGCCTCCTTCTAAAGTTTAGTTTATTTTTGGTGGTTTTAACCCATTG  998

seq1  TCAAAGTAAA---ACACCAA----AAAAAAAAAAAAAAAAAAAAACCAC-  1026
      ||||  ||||   || ||||    || | | || || | | ||| |||| 
seq2  TCAAGTTAAATCTACTCCAATAATAATATATAATAATATACAAACCCACT  1048

seq1  TTCACAAAAA--CT--GCAAATGG  1046
      ||||||||||  ||   |||||||
seq2  TTCACAAAAAACCTTGCCAAATGG  1072


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