BAC Information

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BAC

Clone NameB6Ng01-175B04
Chromosome11 (Build37)
Map Location 100,237,564 - 100,443,765
singlet/doubletdoublet
Overlap geneJup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1
Upstream geneKrt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835
Downstream geneDnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175B04.bB6Ng01-175B04.g
ACCGA002976GA002977
length1,1231,103
definitionB6Ng01-175B04.b B6Ng01-175B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,237,564 - 100,238,678)(100,442,682 - 100,443,765)
sequence
gaattccaggccaaaggatagctcccagactgcccttcccccaagtaggc
gagacccaagacgctcagtttatccaaccctcaagctggccaatttgaca
gtggaaaatggcctctcactgggagctaaatttcatttctgtaaattcct
gggccgagcattctgcttatgagccacctgggagccacttgttgactctg
tgagcaccacactgttaggacccagtgttaatgagctccggtgtgctgag
gcgctggctcctaggttccatgtttgtccctttcctgtttcttgaatctg
cagatgctcttcatgtctgcatgtggctgcacttcaagaaggctctcgtg
atctaagttcggaaagccacttatccacccttctctacacagacctagac
tactcctggcccacacattccaaacccctcagcagcacctggggacagat
ctgcccatctgtaccggactcacctggacaaacaggggaatggtgttgag
ccggaagatctccatgcggttcatgggatcccgggcgaggatgtgcaggg
ctccggtgcagccttccacgatctcctccatcctcacaccatccgtgtag
ggctgctgggtgcctgcagccacatggcgctgggcgtcctggtgggcctt
gaccaacagctggacgaggcggggaatgaccgcggcctcctgcagagggg
catggttggctgggcacagagccaggttccggatcaggccaatagttgcc
tggcaagaaaggaggcagtgatgagtggaggggcgggtagtccttaaaca
tctggaggatccctgatccccggctttaggtattttgtccttcctgtcat
ctcttctgaatctgagtcccacttcagcaacaaccgcagagtcaaggagc
atcctggctactcctggaaacggaactgggggccttgtgggcggggctgt
aggcacagaacctgaaggaatctagagctaaagtttggggctttaagctc
agttagtacacacaaaggtttggatacccagcaccgtacagagttgggtt
gtgattgcacagaacttactcagcaagtatgagtagcttggatgcatgta
ggatcaaggcaaacctggctaca
gaattctgggacagccagggctacacagagaaaccctgtctcgaaaaaaa
acaaaaaaattctgctctttcaaagcatggcaggcagctcctggtctcgg
gcctttgctggcttaaggctcaaactgttggaaagtgttctctgcaaatg
catgactggtctcctcccgcttacatgaggcaacataaagggatctgcac
actgctcagctaagttgctgttctaggcagacacaagaggctctgaagct
ggactgcaggtgctgatggcacagatagctagggagagagaggccttgaa
ccagagcagcaggagggactgctgaatgtgtctactcttgggtgtgagga
gcaaggttgccttccccaagtaccccacaaagcccaggctgggaactctg
ggccttgctgagaggtctttgggacatggccacctgcatgtggtcggttg
ccttagctgtcagataaaggctttgtgctccaagtttctggctgccagcc
aatccccaccttctctatgtgtctgaagccagcctctcctttctgcttca
tgaaagccaacactgttgccctacccagcctcgtcacagctgtgcccagc
cagcagaagggagacaggaccgatggccccaagctgtgggacaaagctgg
tcttaatgtacgcagccctaaccccagggaagactgggctggacatagaa
ggccaagagtgatagcacacagctgggattaacatgatttatttcagtat
cagtcttagtggtggcttgaggtgggcaacacagggtgagggtaggagca
tacatcccagattctcgggttgacaacccaattagcaagggtcctgttac
tgagcagaaggcagagtgaaggtacttccaggagccaggctttgccagag
caggagaatggggcttacttcttgccagctcagggtcccctccactggtt
cttggtacctaccacccctccttttaagacccagaggcaccatgcaggca
gattgggctgggccagaagcaaagctgggagcttcttcggggcattcttt
tctgaacttttggtccctcaatccacaacagcagagacatgcttgcctgg
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100237564_100238678
seq2: B6Ng01-175B04.b_49_1171

seq1  GAATTCCAGGCCAAAGGATAGCTCCCAGACTGCCCTTCCCCCAAGTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAAAGGATAGCTCCCAGACTGCCCTTCCCCCAAGTAGGC  50

seq1  GAGACCCAAGACGCTCAGTTTATCCAACCCTCAAGCTGGCCAATTTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCAAGACGCTCAGTTTATCCAACCCTCAAGCTGGCCAATTTGACA  100

seq1  GTGGAAAATGGCCTCTCACTGGGAGCTAAATTTCATTTCTGTAAATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAATGGCCTCTCACTGGGAGCTAAATTTCATTTCTGTAAATTCCT  150

seq1  GGGCCGAGCATTCTGCTTATGAGCCACCTGGGAGCCACTTGTTGACTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGAGCATTCTGCTTATGAGCCACCTGGGAGCCACTTGTTGACTCTG  200

seq1  TGAGCACCACACTGTTAGGACCCAGTGTTAATGAGCTCCGGTGTGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCACACTGTTAGGACCCAGTGTTAATGAGCTCCGGTGTGCTGAG  250

seq1  GCGCTGGCTCCTAGGTTCCATGTTTGTCCCTTTCCTGTTTCTTGAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGCTCCTAGGTTCCATGTTTGTCCCTTTCCTGTTTCTTGAATCTG  300

seq1  CAGATGCTCTTCATGTCTGCATGTGGCTGCACTTCAAGAAGGCTCTCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTCTTCATGTCTGCATGTGGCTGCACTTCAAGAAGGCTCTCGTG  350

seq1  ATCTAAGTTCGGAAAGCCACTTATCCACCCTTCTCTACACAGACCTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTTCGGAAAGCCACTTATCCACCCTTCTCTACACAGACCTAGAC  400

seq1  TACTCCTGGCCCACACATTCCAAACCCCTCAGCAGCACCTGGGGACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGGCCCACACATTCCAAACCCCTCAGCAGCACCTGGGGACAGAT  450

seq1  CTGCCCATCTGTACCGGACTCACCTGGACAAACAGGGGAATGGTGTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATCTGTACCGGACTCACCTGGACAAACAGGGGAATGGTGTTGAG  500

seq1  CCGGAAGATCTCCATGCGGTTCATGGGATCCCGGGCGAGGATGTGCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGATCTCCATGCGGTTCATGGGATCCCGGGCGAGGATGTGCAGGG  550

seq1  CTCCGGTGCAGCCTTCCACGATCTCCTCCATCCTCACACCATCCGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGTGCAGCCTTCCACGATCTCCTCCATCCTCACACCATCCGTGTAG  600

seq1  GGCTGCTGGGTGCCTGCAGCCACATGGCGCTGGGCGTCCTGGTGGGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGGTGCCTGCAGCCACATGGCGCTGGGCGTCCTGGTGGGCCTT  650

seq1  GACCAACAGCTGGACGAGGCGGGGAATGACCGCGGCCTCCTGCAGAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACAGCTGGACGAGGCGGGGAATGACCGCGGCCTCCTGCAGAGGGG  700

seq1  CATGGTTGGCTGGGCACAGAGCCAGGTTCCGGATCAGGCCAATAGTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGGCTGGGCACAGAGCCAGGTTCCGGATCAGGCCAATAGTTGCC  750

seq1  TGGCAAGAAAGGAGGCAGTGATGAGTGGAGGGGCGGGTAGTCCTTAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAAAGGAGGCAGTGATGAGTGGAGGGGCGGGTAGTCCTTAAACA  800

seq1  TCTGGAGGATCCCTGATCCCCGGCTTTAGGTATTTTGTCCTTCCTGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGATCCCTGATCCCCGGCTTTAGGTATTTTGTCCTTCCTGTCAT  850

seq1  CTCTTCTGAATCTGAGTCCCACTTCAGCAACAACCGCAGAGTC-AGGAGC  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCTTCTGAATCTGAGTCCCACTTCAGCAACAACCGCAGAGTCAAGGAGC  900

seq1  ATCCTGGCTACTCCTGG-AACGGAACTGGGGG-CTTGTGGGCGGGGCTGT  947
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  ATCCTGGCTACTCCTGGAAACGGAACTGGGGGCCTTGTGGGCGGGGCTGT  950

seq1  AGGCACAGAA-CTGAAGGAATCTAGAGCT-AAGGTTGGGGCTTT-AGCTC  994
      |||||||||| |||||||||||||||||| ||| |||||||||| |||||
seq2  AGGCACAGAACCTGAAGGAATCTAGAGCTAAAGTTTGGGGCTTTAAGCTC  1000

seq1  AGTTAGGACACACAAAGGGTTGGATACCCAGCACCGCACAGAGT--GGGT  1042
      |||||| ||||||||||| ||||||||||||||||| |||||||  || |
seq2  AGTTAGTACACACAAAGGTTTGGATACCCAGCACCGTACAGAGTTGGGTT  1050

seq1  GTGATGGCACAGAACTTACCCCAGCAAGTAGGGAGAGGCT--GAGGCA-G  1089
      ||||| |||||||||||| | |||||||||  |||  |||  || ||| |
seq2  GTGATTGCACAGAACTTA-CTCAGCAAGTA-TGAGTAGCTTGGATGCATG  1098

seq1  GAGGATCAAGGCGAACCTTGGCTACA  1115
       ||||||||||| |||| ||||||||
seq2  TAGGATCAAGGCAAACC-TGGCTACA  1123

seq1: chr11_100442682_100443765
seq2: B6Ng01-175B04.g_67_1169 (reverse)

seq1  TCTCCAG--CAGCATGTCTCTGCTG-TGTGGATGGAGG--CC--AAGGTC  43
      |||||||   ||||||||||||||| ||||||| ||||  ||  ||| ||
seq2  TCTCCAGGCAAGCATGTCTCTGCTGTTGTGGATTGAGGGACCAAAAGTTC  50

seq1  AGAAA--GATGCCCCG-AGAAGCT-CCAGCTTTGCTTTCTGCCCAGCCCA  89
      |||||   |||||||| ||||||| ||||||||||||   ||||||||||
seq2  AGAAAAGAATGCCCCGAAGAAGCTCCCAGCTTTGCTTCTGGCCCAGCCCA  100

seq1  TCTTGCCTGCATGGTGCCTCTGGGTCTTTAAAGGA-GGGTGGTAGGTACC  138
         ||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  ATCTGCCTGCATGGTGCCTCTGGGTCTTAAAAGGAGGGGTGGTAGGTACC  150

seq1  AAGAACCAGTGGAGGGGACCCTGAGCTGGCAAG-AGTAAGCCCCA-TCTC  186
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  AAGAACCAGTGGAGGGGACCCTGAGCTGGCAAGAAGTAAGCCCCATTCTC  200

seq1  CTGCTCTGGCAAAGCCTGGCTCCTGG-AGTACC-TCACTCTGCCTTCTGC  234
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  CTGCTCTGGCAAAGCCTGGCTCCTGGAAGTACCTTCACTCTGCCTTCTGC  250

seq1  TCAGTAACAGGA-CCTTGCTAATTGGGTTGTC-ACCCGAGAATCTGGGAT  282
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TCAGTAACAGGACCCTTGCTAATTGGGTTGTCAACCCGAGAATCTGGGAT  300

seq1  GTATGCTCCTACCCTCACCCTGTGTTGCCCACCTC-AGCCACCACTAAGA  331
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTATGCTCCTACCCTCACCCTGTGTTGCCCACCTCAAGCCACCACTAAGA  350

seq1  CTGATACTGAAATAAATCATGTTAATCCCAGCTGTGTGCTATCACTCTTG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACTGAAATAAATCATGTTAATCCCAGCTGTGTGCTATCACTCTTG  400

seq1  GCCTTCTATGTCCAGCCCAGTCTTCCCTGGGGTTAGGGCTGCGTACATTA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTATGTCCAGCCCAGTCTTCCCTGGGGTTAGGGCTGCGTACATTA  450

seq1  AGACCAGCTTTGTCCCACAGCTTGGGGCCATCGGTCCTGTCTCCCTTCTG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCTTTGTCCCACAGCTTGGGGCCATCGGTCCTGTCTCCCTTCTG  500

seq1  CTGGCTGGGCACAGCTGTGACGAGGCTGGGTAGGGCAACAGTGTTGGCTT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGGCACAGCTGTGACGAGGCTGGGTAGGGCAACAGTGTTGGCTT  550

seq1  TCATGAAGCAGAAAGGAGAGGCTGGCTTCAGACACATAGAGAAGGTGGGG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGCAGAAAGGAGAGGCTGGCTTCAGACACATAGAGAAGGTGGGG  600

seq1  ATTGGCTGGCAGCCAGAAACTTGGAGCACAAAGCCTTTATCTGACAGCTA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGGCAGCCAGAAACTTGGAGCACAAAGCCTTTATCTGACAGCTA  650

seq1  AGGCAACCGACCACATGCAGGTGGCCATGTCCCAAAGACCTCTCAGCAAG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACCGACCACATGCAGGTGGCCATGTCCCAAAGACCTCTCAGCAAG  700

seq1  GCCCAGAGTTCCCAGCCTGGGCTTTGTGGGGTACTTGGGGAAGGCAACCT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGTTCCCAGCCTGGGCTTTGTGGGGTACTTGGGGAAGGCAACCT  750

seq1  TGCTCCTCACACCCAAGAGTAGACACATTCAGCAGTCCCTCCTGCTGCTC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCACACCCAAGAGTAGACACATTCAGCAGTCCCTCCTGCTGCTC  800

seq1  TGGTTCAAGGCCTCTCTCTCCCTAGCTATCTGTGCCATCAGCACCTGCAG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAAGGCCTCTCTCTCCCTAGCTATCTGTGCCATCAGCACCTGCAG  850

seq1  TCCAGCTTCAGAGCCTCTTGTGTCTGCCTAGAACAGCAACTTAGCTGAGC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCAGAGCCTCTTGTGTCTGCCTAGAACAGCAACTTAGCTGAGC  900

seq1  AGTGTGCAGATCCCTTTATGTTGCCTCATGTAAGCGGGAGGAGACCAGTC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCAGATCCCTTTATGTTGCCTCATGTAAGCGGGAGGAGACCAGTC  950

seq1  ATGCATTTGCAGAGAACACTTTCCAACAGTTTGAGCCTTAAGCCAGCAAA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTGCAGAGAACACTTTCCAACAGTTTGAGCCTTAAGCCAGCAAA  1000

seq1  GGCCCGAGACCAGGAGCTGCCTGCCATGCTTTGAAAGAGCAGAATTTTTT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGAGACCAGGAGCTGCCTGCCATGCTTTGAAAGAGCAGAATTTTTT  1050

seq1  TGTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCCAGAA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCCAGAA  1100

seq1  TTC  1084
      |||
seq2  TTC  1103