BAC Information

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BAC

Clone NameB6Ng01-175F14
Chromosome11 (Build37)
Map Location 77,706,711 - 77,851,148
singlet/doubletdoublet
Overlap genePipox, Sez6, LOC100043518, Phf12, Dhrs13
Upstream geneTmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a
Downstream geneFlot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175F14.bB6Ng01-175F14.g
ACCGA003177GA003178
length949638
definitionB6Ng01-175F14.b B6Ng01-175F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,850,204 - 77,851,148)(77,706,711 - 77,707,348)
sequence
gaattcagtcagtaattaatgtttaacatctgcagtgcatcaaccacaaa
gtctccggccctttccctgggcagatcactactcagggaagggctcagaa
atctgaaaatcaaattccagagcaacacagtatctcatatatcatccctg
aatctggggttacagtgtctcttaggaagtagtattcatttcctttcaca
aggaaaagggctgttcaggacatgacaagaggttccgaggtaaatgtggc
aacccttcagtgcccaggcacacaactgagatttttgagggatcccactg
ggctacaaaagcattctatcccgggggttaggaaagttagggtgtaggtt
catccttcacctgaattcttcgctgtgtcaatttggataagtcttgcgag
ccctgatagctatgagaaggtccagaaactgtggttttctcagggctggg
ggcgctctgagaagatggggccctgggatcctcaggttccggctcttcat
cagggtcatcatcatcgtctccaggtgcaagccctgccaacttcttggta
gctttccatagcctttgagcagcctggtcatctctagcagctggggagac
ctcctccacgtggcagttggcaaaatatctcccgctgaggggctcaatgc
cctcctgcagagcgcagtacaggggtgtctgggcacccccttgaggtgcc
cggagcaccagccaagccagtgggcgcaaaataggacgcagccatccagg
aagatgacgcagaagagctccgagttcacaggtcctgtgggcaggaagaa
agaggatttgtgggaggaagcaatgggggcccatgcatcatgtaggtaaa
aaaaccagcttaggatcagaccgtagaatctgcttccagggaaagtgtct
acaaggtattccaggggcccctaccaaggtgatttaccctattttccta
gaattcaacagcagctcctgctaggttctggaaggagcagctgagaaaac
gcagctttctccaaagctggtacatcagcctttgcctctaggcaaaactg
tctttatttaaggttacccagagcagaattgattctttttctggttgtat
caaccatgtgggcaaagacaagacagggttgcaagaatgaaaagaagtgg
gacacttcttgatccggggcaagaactaagagacttaaaagagtatacca
agaaacctcacgtggacttaagggtgggaattttctttgcattgtcaaga
tccacgtgaagtggctacgaagctacgaagtgcacagaattcctgatgtc
tgaccgtttggcttcacttatagcccaaaaattctggaaagccctcccta
ggagaggaaagaagaggggacagtcttatatagcagaagggcagaaggca
cagtgtacctgctccagcaggaggacgctcttggagtgtttggccaggtg
gtacgcggtaaagcagccctggatgcctgctccaatcacaatagcatccc
agaaatctgtctgagcagccatgatgccacaaagcccactgaagagaagg
caaacaaaggcacctccaggctacagggggaggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_77850204_77851148
seq2: B6Ng01-175F14.b_48_996 (reverse)

seq1  TAGG-AAATGGGTTAAATCACCTTG--TGGGGCCCCT-GAATACCTGGTA  46
      |||| |||| || ||||||||||||   ||||||||| |||||||| |||
seq2  TAGGAAAATAGGGTAAATCACCTTGGTAGGGGCCCCTGGAATACCTTGTA  50

seq1  GACACTTTCCCTGGAAGCAGATTCTACCGTCTGATCCT-AGCTGGTTTTT  95
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  GACACTTTCCCTGGAAGCAGATTCTACGGTCTGATCCTAAGCTGGTTTTT  100

seq1  TTCCCTGCCTGATGCCTGGGCCCCCATTGCCTTCCT-CCACAAATCCTCT  144
      || ||| | |||||| ||||||||||||| |||||| |||||||||||||
seq2  TTACCTACATGATGCATGGGCCCCCATTG-CTTCCTCCCACAAATCCTCT  149

seq1  TTCTTCCTGCCCACAGGACCTGTGAACTCGGAGCTCTTCCTGCGTCATCT  194
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCTTCCTGCCCACAGGACCTGTGAACTCGGAGCTCTT-CTGCGTCATCT  198

seq1  TCCTGGATGGCTGCGTCCTATTTTGCGCCCACTGGCTTGGCTGGTGCTCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATGGCTGCGTCCTATTTTGCGCCCACTGGCTTGGCTGGTGCTCC  248

seq1  GGGCACCTCAAGGGGGTGCCCAGACACCCCTGTACTGCGCTCTGCAGGAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCTCAAGGGGGTGCCCAGACACCCCTGTACTGCGCTCTGCAGGAG  298

seq1  GGCATTGAGCCCCTCAGCGGGAGATATTTTGCCAACTGCCACGTGGAGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGAGCCCCTCAGCGGGAGATATTTTGCCAACTGCCACGTGGAGGA  348

seq1  GGTCTCCCCAGCTGCTAGAGATGACCAGGCTGCTCAAAGGCTATGGAAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCCAGCTGCTAGAGATGACCAGGCTGCTCAAAGGCTATGGAAAG  398

seq1  CTACCAAGAAGTTGGCAGGGCTTGCACCTGGAGACGATGATGATGACCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGAAGTTGGCAGGGCTTGCACCTGGAGACGATGATGATGACCCT  448

seq1  GATGAAGAGCCGGAACCTGAGGATCCCAGGGCCCCATCTTCTCAGAGCGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAGCCGGAACCTGAGGATCCCAGGGCCCCATCTTCTCAGAGCGC  498

seq1  CCCCAGCCCTGAGAAAACCACAGTTTCTGGACCTTCTCATAGCTATCAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCTGAGAAAACCACAGTTTCTGGACCTTCTCATAGCTATCAGG  548

seq1  GCTCGCAAGACTTATCCAAATTGACACAGCGAAGAATTCAGGTGAAGGAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCAAGACTTATCCAAATTGACACAGCGAAGAATTCAGGTGAAGGAT  598

seq1  GAACCTACACCCTAACTTTCCTAACCCCCGGGATAGAATGCTTTTGTAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTACACCCTAACTTTCCTAACCCCCGGGATAGAATGCTTTTGTAGC  648

seq1  CCAGTGGGATCCCTCAAAAATCTCAGTTGTGTGCCTGGGCACTGAAGGGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGATCCCTCAAAAATCTCAGTTGTGTGCCTGGGCACTGAAGGGT  698

seq1  TGCCACATTTACCTCGGAACCTCTTGTCATGTCCTGAACAGCCCTTTTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATTTACCTCGGAACCTCTTGTCATGTCCTGAACAGCCCTTTTCC  748

seq1  TTGTGAAAGGAAATGAATACTACTTCCTAAGAGACACTGTAACCCCAGAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAAGGAAATGAATACTACTTCCTAAGAGACACTGTAACCCCAGAT  798

seq1  TCAGGGATGATATATGAGATACTGTGTTGCTCTGGAATTTGATTTTCAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATGATATATGAGATACTGTGTTGCTCTGGAATTTGATTTTCAGA  848

seq1  TTTCTGAGCCCTTCCCTGAGTAGTGATCTGCCCAGGGAAAGGGCCGGAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCCCTTCCCTGAGTAGTGATCTGCCCAGGGAAAGGGCCGGAGA  898

seq1  CTTTGTGGTTGATGCACTGCAGATGTTAAACATTAATTACTGACTGAATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGTTGATGCACTGCAGATGTTAAACATTAATTACTGACTGAATT  948

seq1  C  945
      |
seq2  C  949

seq1: chr11_77706711_77707348
seq2: B6Ng01-175F14.g_69_706

seq1  GAATTCAACAGCAGCTCCTGCTAGGTTCTGGAAGGAGCAGCTGAGAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGCAGCTCCTGCTAGGTTCTGGAAGGAGCAGCTGAGAAAAC  50

seq1  GCAGCTTTCTCCAAAGCTGGTACATCAGCCTTTGCCTCTAGGCAAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTCTCCAAAGCTGGTACATCAGCCTTTGCCTCTAGGCAAAACTG  100

seq1  TCTTTATTTAAGGTTACCCAGAGCAGAATTGATTCTTTTTCTGGTTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTAAGGTTACCCAGAGCAGAATTGATTCTTTTTCTGGTTGTAT  150

seq1  CAACCATGTGGGCAAAGACAAGACAGGGTTGCAAGAATGAAAAGAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGTGGGCAAAGACAAGACAGGGTTGCAAGAATGAAAAGAAGTGG  200

seq1  GACACTTCTTGATCCGGGGCAAGAACTAAGAGACTTAAAAGAGTATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCTTGATCCGGGGCAAGAACTAAGAGACTTAAAAGAGTATACCA  250

seq1  AGAAACCTCACGTGGACTTAAGGGTGGGAATTTTCTTTGCATTGTCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTCACGTGGACTTAAGGGTGGGAATTTTCTTTGCATTGTCAAGA  300

seq1  TCCACGTGAAGTGGCTACGAAGCTACGAAGTGCACAGAATTCCTGATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTGAAGTGGCTACGAAGCTACGAAGTGCACAGAATTCCTGATGTC  350

seq1  TGACCGTTTGGCTTCACTTATAGCCCAAAAATTCTGGAAAGCCCTCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTTTGGCTTCACTTATAGCCCAAAAATTCTGGAAAGCCCTCCCTA  400

seq1  GGAGAGGAAAGAAGAGGGGACAGTCTTATATAGCAGAAGGGCAGAAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAAGAAGAGGGGACAGTCTTATATAGCAGAAGGGCAGAAGGCA  450

seq1  CAGTGTACCTGCTCCAGCAGGAGGACGCTCTTGGAGTGTTTGGCCAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACCTGCTCCAGCAGGAGGACGCTCTTGGAGTGTTTGGCCAGGTG  500

seq1  GTACGCGGTAAAGCAGCCCTGGATGCCTGCTCCAATCACAATAGCATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCGGTAAAGCAGCCCTGGATGCCTGCTCCAATCACAATAGCATCCC  550

seq1  AGAAATCTGTCTGAGCAGCCATGATGCCACAAAGCCCACTGAAGAGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGTCTGAGCAGCCATGATGCCACAAAGCCCACTGAAGAGAAGG  600

seq1  CAAACAAAGGCACCTCCAGGCTACAGGGGGAGGAGGGA  638
      ||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAGGCACCTCCAGGCTACAGGGGGAGGAGGGA  638