BAC Information

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BAC

Clone NameB6Ng01-175J01
Chromosome11 (Build37)
Map Location 79,515,793 - 79,609,270
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
Downstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175J01.bB6Ng01-175J01.g
ACCGA003335GA003336
length796858
definitionB6Ng01-175J01.b B6Ng01-175J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,608,456 - 79,609,270)(79,515,793 - 79,516,642)
sequence
gaattctttgggtcctgagttgaggtctcttccacaaaagtatgtcttgt
tctacagaaaggatgaccaaagcacaaagtttccacttgaagctgttttt
tcttttaagttattattgtataggtacacacacacacacacacacacaca
cacacacacacactcatgccccaattctgtgaacatccaggtggagttgg
ttctctccttccacatttatgtgggtcccagggatcaaacttggctcacc
aggcttatgtagcaagtgattctgccaacggagccttctttccagctatt
cgaggctgcttttcttggtggtggtggtggggtatgagtctcacaggtac
acaggtgctgacggccaggtcaacagctggctactcttagggaagtttct
cagtctaagcctgaagcatctcttttggctcatctgccttccattggggt
attgaactctgatcacaggcctgcaacccaagcagtgccacccactgagc
catctccctggcctgcaatatggttgtttaatcagagccatcaacatctg
cgtgatcactcttgtttttaattatttgtatgagtgtttttgcctgtata
tgtgtctgggcatcaggttcacgcctagtgcctctggagtccagaagagg
gcatcagatccctctggaactgaaagttacagatggttgtgagccaccat
gtatggtgctagggatagaacccaagttctaagagtagtcacaatgctct
taatctacctcatctctacagtgcttgtttgttttgttttgttttg
gaattccaaacaatggagccattatggaaactgcagatcccatttaaaaa
aagacacacacacacacacacacacacacacacacacacacacacacacg
gacgcacaccttcaggcccagcatttggaagacaaagggaggcctacctc
accattctgttctacaaatcacaagtagtgggctagccaggacttcaaag
agagacccaccctgtctcaaaataaacaaaaatgtaaaaataaaattaaa
cccacattgctgcttctgggtgtgtatctcacatgaacttgccactcttc
tcattggagtattattgacaaccaaaaaagtctaccaggcagtgacaggt
aaagagaatgtggcctaagctgtgagagaacaaagccagcacatccttct
gcagttacaaaatggaagctgaggggctgaagtaagttggtccccatcag
acacgctgcatcattccttagacatgaagggtctaaggttgtcagcctct
gaaaagcagaaagaatgatggttgccagagacccgtggagaagggatatg
gtgtctaaggggctgggtttcagttcagactggatcccaagtcctggggc
taaagagtaccagtttgggcaactcagcaagaccctggctcagaacagaa
agtagaaagaattggagaaaaatacttattcctcatagagaggacctgag
tttatttccgggcactcacccaaagtgtgagtgtgggggggggggggctc
acaacctacccattactagttttcaggggatcccatgcccttcctctgac
cctcggctggcaccaggcatacacttggttgcaacatacatagctgcaag
tgaagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79608456_79609270
seq2: B6Ng01-175J01.b_46_841 (reverse)

seq1  CAAAACAAAACAAAACAAAACACAAAACAAAACAAAACAAAACAAGCACT  50
                            |||||||||||||||| |||||||||||
seq2  ----------------------CAAAACAAAACAAAAC-AAACAAGCACT  27

seq1  GTAGAGATGAGGTAGTTTAAGAGCATTGTGACTACTCTTAGAACTTGGGT  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTAGAGATGAGGTAGATTAAGAGCATTGTGACTACTCTTAGAACTTGGGT  77

seq1  TCTATCCCTAGCACC-TACATGGTGGCTCACAACCATCTGTAAC-TTCAG  148
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TCTATCCCTAGCACCATACATGGTGGCTCACAACCATCTGTAACTTTCAG  127

seq1  TTCCAG-GGGATCTGATGCCCTCTTCTGGACTCCAGAGGCACTAGGCGTG  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGGATCTGATGCCCTCTTCTGGACTCCAGAGGCACTAGGCGTG  177

seq1  AACCTGATGCCCAGACACATATACAGGC-AAAACACTCATACAAATAATT  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AACCTGATGCCCAGACACATATACAGGCAAAAACACTCATACAAATAATT  227

seq1  AAAAACAAGAGTGATCACGCAGATGTTGATGGCTCTGATTAAACAACCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGAGTGATCACGCAGATGTTGATGGCTCTGATTAAACAACCAT  277

seq1  ATTGCAGGCCAGGGAGATGGCTCAGTGGGTGGCACTGCTTGGGTTGCAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGCCAGGGAGATGGCTCAGTGGGTGGCACTGCTTGGGTTGCAGG  327

seq1  CCTGTGATCAGAGTTCAATACCCCAATGGAAGGCAGATGAGCCAAAAGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATCAGAGTTCAATACCCCAATGGAAGGCAGATGAGCCAAAAGAG  377

seq1  ATGCTTCAGGCTTAGACTGAGAAACTTCCCTAAGAGTAGCCAGCTGTTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAGGCTTAGACTGAGAAACTTCCCTAAGAGTAGCCAGCTGTTGA  427

seq1  CCTGGCCGTCAGCACCTGTGTACCTGTGAGACTCATACCCCACCACCACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCGTCAGCACCTGTGTACCTGTGAGACTCATACCCCACCACCACC  477

seq1  ACCAAGAAAAGCAGCCTCGAATAGCTGGAAAGAAGGCTCCGTTGGCAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAAAGCAGCCTCGAATAGCTGGAAAGAAGGCTCCGTTGGCAGAA  527

seq1  TCACTTGCTACATAAGCCTGGTGAGCCAAGTTTGATCCCTGGGACCCACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCTACATAAGCCTGGTGAGCCAAGTTTGATCCCTGGGACCCACA  577

seq1  TAAATGTGGAAGGAGAGAACCAACTCCACCTGGATGTTCACAGAATTGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGGAAGGAGAGAACCAACTCCACCTGGATGTTCACAGAATTGGG  627

seq1  GCATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACCTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACCTAT  677

seq1  ACAATAATAACTTAAAAGAAAAAACAGCTTCAAGTGGAAACTTTGTGCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATAACTTAAAAGAAAAAACAGCTTCAAGTGGAAACTTTGTGCTT  727

seq1  TGGTCATCCTTTCTGTAGAACAAGACATACTTTTGTGGAAGAGACCTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCCTTTCTGTAGAACAAGACATACTTTTGTGGAAGAGACCTCAA  777

seq1  CTCAGGACCCAAAGAATTC  815
      |||||||||||||||||||
seq2  CTCAGGACCCAAAGAATTC  796

seq1: chr11_79515793_79516642
seq2: B6Ng01-175J01.g_65_922

seq1  GAATTCCAAACAATGGAGCCATTATGGAAACTGCAGATCCCATTTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAATGGAGCCATTATGGAAACTGCAGATCCCATTTAAAAA  50

seq1  AAGACACACACACACACACACACACACACACACACACACACACACACACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACACACACACACACACACACACACACACACACACACACACACACG  100

seq1  GACGCACACCTTCAGGCCCAGCATTTGGAAGACAAAGGGAGGCCTACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCACACCTTCAGGCCCAGCATTTGGAAGACAAAGGGAGGCCTACCTC  150

seq1  ACCATTCTGTTCTACAAATCACAAGTAGTGGGCTAGCCAGGACTTCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTGTTCTACAAATCACAAGTAGTGGGCTAGCCAGGACTTCAAAG  200

seq1  AGAGACCCACCCTGTCTCAAAATAAACAAAAATGTAAAAATAAAATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCACCCTGTCTCAAAATAAACAAAAATGTAAAAATAAAATTAAA  250

seq1  CCCACATTGCTGCTTCTGGGTGTGTATCTCACATGAACTTGCCACTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTGCTGCTTCTGGGTGTGTATCTCACATGAACTTGCCACTCTTC  300

seq1  TCATTGGAGTATTATTGACAACCAAAAAAGTCTACCAGGCAGTGACAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGAGTATTATTGACAACCAAAAAAGTCTACCAGGCAGTGACAGGT  350

seq1  AAAGAGAATGTGGCCTAAGCTGTGAGAGAACAAAGCCAGCACATCCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATGTGGCCTAAGCTGTGAGAGAACAAAGCCAGCACATCCTTCT  400

seq1  GCAGTTACAAAATGGAAGCTGAGGGGCTGAAGTAAGTTGGTCCCCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTACAAAATGGAAGCTGAGGGGCTGAAGTAAGTTGGTCCCCATCAG  450

seq1  ACACGCTGCATCATTCCTTAGACATGAAGGGTCTAAGGTTGTCAGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTGCATCATTCCTTAGACATGAAGGGTCTAAGGTTGTCAGCCTCT  500

seq1  GAAAAGCAGAAAGAATGATGGTTGCCAGAGACCCGTGGAGAAGGGATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGAAAGAATGATGGTTGCCAGAGACCCGTGGAGAAGGGATATG  550

seq1  GTGTCTAAGGGGCTGGGTTTCAGTTCAGACTGGATCCCAAGTCCTGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAAGGGGCTGGGTTTCAGTTCAGACTGGATCCCAAGTCCTGGGGC  600

seq1  TAAAGAGTACCAGTTTGGGCAACTCAGCAAGACCCTGGCTCAGAACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTACCAGTTTGGGCAACTCAGCAAGACCCTGGCTCAGAACAGAA  650

seq1  AGTAGAAAGAATTGGAGAAAAATACTTATTCCTCATAGAGAGGACCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGAATTGGAGAAAAATACTTATTCCTCATAGAGAGGACCTGAG  700

seq1  TTTATTTCCGGGCACTCACCCAAAGTGTGAGTGT--GGGGGGGGGGGCTC  748
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TTTATTTCCGGGCACTCACCCAAAGTGTGAGTGTGGGGGGGGGGGGGCTC  750

seq1  ACAACC-ACCCATTACTAG-TTTCAGGGGATCCCATGCCC-TCCTCTGA-  794
      |||||| |||||||||||| |||||||||||||||||||| |||||||| 
seq2  ACAACCTACCCATTACTAGTTTTCAGGGGATCCCATGCCCTTCCTCTGAC  800

seq1  CCTCGGCTGGCACCAGGCATACACTTGG-TGC-ACATACATAGCTGCAAG  842
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  CCTCGGCTGGCACCAGGCATACACTTGGTTGCAACATACATAGCTGCAAG  850

seq1  TGAAGCAC  850
      ||||||||
seq2  TGAAGCAC  858