BAC Information

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BAC

Clone NameB6Ng01-175N23
Chromosome11 (Build37)
Map Location 48,393,602 - 48,394,439
singlet/doubletsinglet
Overlap geneLOC192895
Upstream geneLOC100039647
Downstream geneHn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175N23.bB6Ng01-175N23.g
ACCGA003562GA003563
length1,168853
definitionB6Ng01-175N23.b B6Ng01-175N23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagcctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaagacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagacgtagctgtctcttgtgagactatgccggggccctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcatagggctccc
aatggagagctagagaaagtagccaaaggagctaaagggatctgcaaccc
tatagggtgaacacattatgaactaacagtaccccggagctcttgactct
agctgcaatatatatccaaaagattgctagttcgccatcacttgtaaaga
gagcccacctggcacctgcacttattgcctagttacaggtactcaggggc
tcaaaaggggggtaatgt
gaattcttgaaagtgttgcagcaatgatcgaagcttaggaaaggttgcag
attgagcacatggatagcaaggttctttcattcaatgtacttcaataaat
aatagagggctccacctgggaaggtggacaaacctcacaggggaggctgt
gggctttgttcctattttctttctattcaggctatgagaatcatagagga
agagcacttgctggagggggaggccctctccttaatgcttcacacagttt
atcttctgtaactgccatatgatcctgtgggatggggtggatgctgtccc
attactgtagatgaagaaatcaagctctctagctactctgaggaggaaag
atcagacccaggcagctctgttttgagttctttcagagtatccctgtatc
ttgacctggcagggagtaaaaaaaaaaggaagtagaatagcttgtagaac
tgactgtattgtttattgtatttattgaaacctaaaaaacctggggactc
taggacaaaagtgtgtattaacaatttaagtttggtaacagctcagcatc
aagccaaaggtgggtccctccctgtctcatggatcttggagacagctgtg
tgatcatggagtcagtagttagactagggtaagatggagatgactaaaaa
agagaccccaagttcctgctcttttctttttaaagctgtgaataatcttg
agatgttgtttttttcttagttagggttctttactgatttgaacagacac
catgactaagtataactctttataaggacaacattttaattgggggctgg
cttataggtttcagatggtccagtcccaatattcatcaaggtggaaaaca
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48393602_48394439
seq2: B6Ng01-175N23.g_66_918 (reverse)

seq1  CCATG-TTTCCACCTTGATG-ATATT-GGACTGAACC-TCTG-AACCTAT  45
      ||||| |||||||||||||| ||||| |||||| ||| |||| |||||||
seq2  CCATGTTTTCCACCTTGATGAATATTGGGACTGGACCATCTGAAACCTAT  50

seq1  AAGCCAG-CCCCAATT-AAATGTTGTCCTTAT-AAGAGTTAT-CTTAGTC  91
      ||||||| |||||||| ||||||||||||||| ||||||||| |||||||
seq2  AAGCCAGCCCCCAATTAAAATGTTGTCCTTATAAAGAGTTATACTTAGTC  100

seq1  ATGGTGTCTGTTCAAATCAGTAA--GACCCTAACTAAG--AAAAACAACA  137
      |||||||||||||||||||||||   ||||||||||||  ||||||||||
seq2  ATGGTGTCTGTTCAAATCAGTAAAGAACCCTAACTAAGAAAAAAACAACA  150

seq1  TCTC-AGATTATTCACAGCTTTAAAAAG-AAAGAGCAGGAACTTGGGGTC  185
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTCAAGATTATTCACAGCTTTAAAAAGAAAAGAGCAGGAACTTGGGGTC  200

seq1  TCTTTTTTAGTCATCTCCATCTTACCCTAGTCTAACTACTGACTCCATGA  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAGTCATCTCCATCTTACCCTAGTCTAACTACTGACTCCATGA  250

seq1  TCACACAGCTGTCTCCAAGATCCATGAGACAGGGAGGGACCCACCTTTGG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGCTGTCTCCAAGATCCATGAGACAGGGAGGGACCCACCTTTGG  300

seq1  CTTGATGCTGAGCTGTTACCAAACTTAAATTGTTAATACACACTTTTGTC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGCTGAGCTGTTACCAAACTTAAATTGTTAATACACACTTTTGTC  350

seq1  CTAGAGTCCCCAGGTTTTTTAGGTTTCAATAAATACAATAAACAATACAG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTCCCCAGGTTTTTTAGGTTTCAATAAATACAATAAACAATACAG  400

seq1  TCAGTTCTACAAGCTATTCTACTTCCTTTTTTTTTTACTCCCTGCCAGGT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTACAAGCTATTCTACTTCCTTTTTTTTTTACTCCCTGCCAGGT  450

seq1  CAAGATACAGGGATACTCTGAAAGAACTCAAAACAGAGCTGCCTGGGTCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACAGGGATACTCTGAAAGAACTCAAAACAGAGCTGCCTGGGTCT  500

seq1  GATCTTTCCTCCTCAGAGTAGCTAGAGAGCTTGATTTCTTCATCTACAGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCCTCCTCAGAGTAGCTAGAGAGCTTGATTTCTTCATCTACAGT  550

seq1  AATGGGACAGCATCCACCCCATCCCACAGGATCATATGGCAGTTACAGAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACAGCATCCACCCCATCCCACAGGATCATATGGCAGTTACAGAA  600

seq1  GATAAACTGTGTGAAGCATTAAGGAGAGGGCCTCCCCCTCCAGCAAGTGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTGTGTGAAGCATTAAGGAGAGGGCCTCCCCCTCCAGCAAGTGC  650

seq1  TCTTCCTCTATGATTCTCATAGCCTGAATAGAAAGAAAATAGGAACAAAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTATGATTCTCATAGCCTGAATAGAAAGAAAATAGGAACAAAG  700

seq1  CCCACAGCCTCCCCTGTGAGGTTTGTCCACCTTCCCAGGTGGAGCCCTCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCTCCCCTGTGAGGTTTGTCCACCTTCCCAGGTGGAGCCCTCT  750

seq1  ATTATTTATTGAAGTACATTGAATGAAAGAACCTTGCTATCCATGTGCTC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATTGAAGTACATTGAATGAAAGAACCTTGCTATCCATGTGCTC  800

seq1  AATCTGCAACCTTTCCTAAGCTTCGATCATTGCTGCAACACTTTCAAGAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCAACCTTTCCTAAGCTTCGATCATTGCTGCAACACTTTCAAGAA  850

seq1  TTC  838
      |||
seq2  TTC  853