BAC Information

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BAC

Clone NameB6Ng01-175P04
Chromosome11 (Build37)
Map Location 60,982,563 - 61,090,591
singlet/doubletdoublet
Overlap geneUsp22, LOC668239, Aldh3a1, Aldh3a2
Upstream geneRai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b
Downstream gene4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175P04.bB6Ng01-175P04.g
ACCGA003618GA003619
length4231,138
definitionB6Ng01-175P04.b B6Ng01-175P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,090,163 - 61,090,591)(60,982,563 - 60,983,694)
sequence
aaccgatgctaagacagccacttgcttctccccacttgaggagcctgtgc
ccacactcaggggcctcacactttcttctgagaccctcatttaaccctca
cgtgtcagcctatattgaagtctttaataaaaccaccaacctttcttcac
tgaaactggctagtcctgaaatcccttccggtgttgaaactataaaccat
ggcttggctggagtcacagttctgataatctcagagaactcctcaggtca
gtgaggacggctctgtggagccgagtctctgtccttttactattgacagg
agcgtctttttagtcccatgcttttaactgttttggaaagatatggttgg
gttaacatttatcttattatttttctatttgttctcttttcctttatctt
ttgtgtgtgtgtgtgtgtgtgtg
gaattccatgtgataactacagtgggggagacaaaacaaaacccattttc
tgtcaccattcacagcaagaagggacttaaaacagaatcagccatggata
ctacatcaccaggcaaaataacaatggtactagaaaactgccaaatacac
caagtacctcccaaatcaacgaacagataaacaatgacaccactctgtaa
ccaagataagctgatgtgggcaaggacatgggccacaggctactgaacac
gcagaacaagcaaatccctgcagattgtggctggggacggcagggaacag
atgtagtgtgccaaaatctggcagaggtgggcacaaaacctcatagcact
gaatactccagctcatactctcctgttccttcacccatgaagggcagcac
cctgctctgtctaatgcacctggactactaggtttccggtttgattttgt
ttgttttgctgttgttgttttctgttttgttttgtttttttgctaaatct
gtaattaggtttggatccagagtgcccagtaggcctacctactgaacatc
tagtcccagccgccgccatcaccatcatcatctggtcccagccatcatca
tcattattattatattatttcttcttctgatgatgatgaagaaactatta
ttataggttagctcagggagtttagtatctggaaacaatacatgtctgta
tttgagtatggactacgtatgagatagccacattccctcattattcctgg
acagtgttcattattatcgtcacagactatgccctcatttcttatggcag
caatggcaataactaccgagatgtcaccaaccaattcttatacaacgagg
gtgagggcggatgtaaaactggacctggagatgggcacaacagttaaaaa
ggtcctgtctgctcttgcagaggacccgagtttcaatccccaacacaaca
cagcaactcaacaacttcctgtaactccagcttccagggacttctgacac
ccttcttctttgccttctgtagaggcccacagtgtacacagacatacatc
aggcaaataccacataaataaggatggtaaatggaccaatggaacttatg
acaattgtttttctgacattaactttattgtgaggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61090163_61090591
seq2: B6Ng01-175P04.b_47_475 (reverse)

seq1  CACACACACACACACACACACAAAAGATAAAGGAAAAGAGAACAAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAAAAGATAAAGGAAAAGAGAACAAATAGA  50

seq1  AAAATAATAAGATAAATGTTAACCCAACCATATCTTTCCAAAACAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAAGATAAATGTTAACCCAACCATATCTTTCCAAAACAGTTAA  100

seq1  AAGCATGGGACTAAAAAGACGCTCCTGTCAATAGTAAAAGGACAGAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGGACTAAAAAGACGCTCCTGTCAATAGTAAAAGGACAGAGACT  150

seq1  CGGCTCCACAGAGCCGTCCTCACTGACCTGAGGAGTTCTCTGAGATTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCCACAGAGCCGTCCTCACTGACCTGAGGAGTTCTCTGAGATTATC  200

seq1  AGAACTGTGACTCCAGCCAAGCCATGGTTTATAGTTTCAACACCGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTGACTCCAGCCAAGCCATGGTTTATAGTTTCAACACCGGAAGG  250

seq1  GATTTCAGGACTAGCCAGTTTCAGTGAAGAAAGGTTGGTGGTTTTATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGGACTAGCCAGTTTCAGTGAAGAAAGGTTGGTGGTTTTATTAA  300

seq1  AGACTTCAATATAGGCTGACACGTGAGGGTTAAATGAGGGTCTCAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAATATAGGCTGACACGTGAGGGTTAAATGAGGGTCTCAGAAGA  350

seq1  AAGTGTGAGGCCCCTGAGTGTGGGCACAGGCTCCTCAAGTGGGGAGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAGGCCCCTGAGTGTGGGCACAGGCTCCTCAAGTGGGGAGAAGC  400

seq1  AAGTGGCTGTCTTAGCATCGGTTGAATTC  429
      |||||||||||||||||||||||||||||
seq2  AAGTGGCTGTCTTAGCATCGGTTGAATTC  429

seq1: chr11_60982563_60983694
seq2: B6Ng01-175P04.g_68_1205

seq1  GAATTCCATGTGATAACTACAGTGGGGGAGACAAAACAAAACCCATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGATAACTACAGTGGGGGAGACAAAACAAAACCCATTTTC  50

seq1  TGTCACCATTCACAGCAAGAAGGGACTTAAAACAGAATCAGCCATGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCATTCACAGCAAGAAGGGACTTAAAACAGAATCAGCCATGGATA  100

seq1  CTACATCACCAGGCAAAATAACAATGGTACTAGAAAACTGCCAAATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCACCAGGCAAAATAACAATGGTACTAGAAAACTGCCAAATACAC  150

seq1  CAAGTACCTCCCAAATCAACGAACAGATAAACAATGACACCACTCTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACCTCCCAAATCAACGAACAGATAAACAATGACACCACTCTGTAA  200

seq1  CCAAGATAAGCTGATGTGGGCAAGGACATGGGCCACAGGCTACTGAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAAGCTGATGTGGGCAAGGACATGGGCCACAGGCTACTGAACAC  250

seq1  GCAGAACAAGCAAATCCCTGCAGATTGTGGCTGGGGACGGCAGGGAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACAAGCAAATCCCTGCAGATTGTGGCTGGGGACGGCAGGGAACAG  300

seq1  ATGTAGTGTGCCAAAATCTGGCAGAGGTGGGCACAAAACCTCATAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTGTGCCAAAATCTGGCAGAGGTGGGCACAAAACCTCATAGCACT  350

seq1  GAATACTCCAGCTCATACTCTCCTGTTCCTTCACCCATGAAGGGCAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTCCAGCTCATACTCTCCTGTTCCTTCACCCATGAAGGGCAGCAC  400

seq1  CCTGCTCTGTCTAATGCACCTGGACTACTAGGTTTCCGGTTTGATTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTGTCTAATGCACCTGGACTACTAGGTTTCCGGTTTGATTTTGT  450

seq1  TTGTTTTGCTGTTGTTGTTTTCTGTTTTGTTTTGTTTTTTTGCTAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCTGTTGTTGTTTTCTGTTTTGTTTTGTTTTTTTGCTAAATCT  500

seq1  GTAATTAGGTTTGGATCCAGAGTGCCCAGTAGGCCTACCTACTGAACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGGTTTGGATCCAGAGTGCCCAGTAGGCCTACCTACTGAACATC  550

seq1  TAGTCCCAGCCGCCGCCATCACCATCATCATCTGGTCCCAGCCATCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCAGCCGCCGCCATCACCATCATCATCTGGTCCCAGCCATCATCA  600

seq1  TCATTATTATTATATTATTTCTTCTTCTGATGATGATGAAGAAACTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTATTATATTATTTCTTCTTCTGATGATGATGAAGAAACTATTA  650

seq1  TTATAGGTTAGCTCAGGGAGTTTAGTATCTGGAAACAATACATGTCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTTAGCTCAGGGAGTTTAGTATCTGGAAACAATACATGTCTGTA  700

seq1  TTTGAGTATGGACTACGTATGAGATAGCCACATTCCCTCATTATTCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTATGGACTACGTATGAGATAGCCACATTCCCTCATTATTCCTGG  750

seq1  ACAGTGTTCATTATTATCGTCACAGACTATGCCCTCA-TTCTTATGGCAG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAGTGTTCATTATTATCGTCACAGACTATGCCCTCATTTCTTATGGCAG  800

seq1  CAATGGCAATAACTACCGAGATGTCACCAACCAATTCTTATACAACGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCAATAACTACCGAGATGTCACCAACCAATTCTTATACAACGAGG  850

seq1  GTGAGGGCGGATGTAAAACTGGACCTGGAGAT-GGCACAACAGTTAAAAA  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGAGGGCGGATGTAAAACTGGACCTGGAGATGGGCACAACAGTTAAAAA  900

seq1  GGTCCTGTCTGCTCTTGCAGAGGACCCGAG-TTCAATCCCCAACAACAAC  947
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GGTCCTGTCTGCTCTTGCAGAGGACCCGAGTTTCAATCCCCAAC-ACAAC  949

seq1  ACAGCAACTC-ACAACTTCCTGTAACTCCAGC-TCCAGGGAC-TCTGACA  994
      |||||||||| ||||||||||||||||||||| ||||||||| |||||||
seq2  ACAGCAACTCAACAACTTCCTGTAACTCCAGCTTCCAGGGACTTCTGACA  999

seq1  CCC-TCTTC-TTGCC-TCTGTAGAGGCCCACAGTGGTACACAGACATACA  1041
      ||| ||||| ||||| |||||||||||||||||| |||||||||||||||
seq2  CCCTTCTTCTTTGCCTTCTGTAGAGGCCCACAGT-GTACACAGACATACA  1048

seq1  TCAGGCAAATACACACATAAAATAAAGAATGGTAAAAATGAACCAATGGA  1091
      |||||||||||| ||||||||   ||| |||||  ||||| |||||||||
seq2  TCAGGCAAATAC-CACATAAA--TAAGGATGGT--AAATGGACCAATGGA  1093

seq1  AATTATGACAATTG-TTTTCTGACATTA--CTTATTGT-AGGTTT  1132
      | |||||||||||| |||||||||||||   ||||||| ||||||
seq2  ACTTATGACAATTGTTTTTCTGACATTAACTTTATTGTGAGGTTT  1138