BAC Information

Click to search

BAC

Clone NameB6Ng01-176F21
Chromosome11 (Build37)
Map Location 105,929,670 - 106,079,907
singlet/doubletdoublet
Overlap geneCcdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42
Upstream gene4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68
Downstream geneFtsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176F21.bB6Ng01-176F21.g
ACCGA003919GA003920
length407990
definitionB6Ng01-176F21.b B6Ng01-176F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,929,670 - 105,930,082)(106,078,924 - 106,079,907)
sequence
catcgcctgtacccaccaataaagaaacttcttccctaaaatagttctcc
ttattccaatagaatcactaaatcaagtactttctgtttgtttgtttgtt
tgtttgtttgtttatgacagagtctcactcttttttttttttgtttgttt
gtttgtttgtttgttttgaatcatggtttctcaatgtagccctggctgac
ctggaatctgcctctgcctcctgagtgcagggtttgaaggtgttcagcac
catgtccagccagaatctcactcttaactgaaacggacccagaactcatt
atgtagttcacatgctgagcctctggagtggtggggttacgggtgtgcgc
caatatgcttatctagattaaatactgtgtgtgtgtgtgtgtgtgtgtgt
gagtgtg
gaattccatcctgaggacctacatagtggaaggagaaaaccaactcccag
aggttggcctctaacctctacaggagggcatgataaacatacataaagaa
ataacgtgccgggcagtggtggcgcatgcctttaatcccagcacttggga
ggcagaggcaggcagatttctgagttccaggccagcctggtctacagagt
gagttccagaacaacaagagctatacagaaaagccctgtcttgaaaaaac
aaaaacaaagacaaacaaaataatacgtccaaaaaatgtatataaagagt
ctcatgagtgcagtggtcatagatttaacacttaagcaattcaagagaga
acaggcacagaggcaaggcaataacaattttatttttaaatgaatcactg
caattctccttctaggtaaagtaaaataacattttcgccctggaagaata
aatttttatatcagacttactgttcacttcccacctgtcagaacaggatt
ggactctacaaagtttaaacgaattaagacataacctaccacccacgacg
ggtggtgatgcacgcctttaatcccagcacttgggaggcagaggcaggtg
gatctctgagttcgaggccagcctggtctatagagtgaattccaggacag
ccagggctacagagaaaccctgtctcgaaggaagaaaaaaaagaaaaaga
aaaagacataatatctactctacttaataattgttcagcttaatagctgt
ttcaggtatgtgtaggagacaatacagaaaataacacttgcaaatagtaa
caacaacaacaacacagtaggaaagcccacaaaaccacagcctaaagggg
gtaggggtgaaaagggaaaaagctaagatgacagaaaagtttatatatgc
ttcccaaacttgactagtataatttttttcctaacgattctgatacaggt
ttcaacccatatatattattccaaatcaggaaggctcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105929670_105930082
seq2: B6Ng01-176F21.b_46_458

seq1  GAATTCCATCGCCTGTACCCACCAATAAAGAAACTTCTTCCCTAAAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCGCCTGTACCCACCAATAAAGAAACTTCTTCCCTAAAATAG  50

seq1  TTCTCCTTATTCCAATAGAATCACTAAATCAAGTACTTTCTGTTTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTATTCCAATAGAATCACTAAATCAAGTACTTTCTGTTTGTTTG  100

seq1  TTTGTTTGTTTGTTTGTTTATGACAGAGTCTCACTCTTTTTTTTTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTATGACAGAGTCTCACTCTTTTTTTTTTTTGT  150

seq1  TTGTTTGTTTGTTTGTTTGTTTTGAATCATGGTTTCTCAATGTAGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTGTTTTGAATCATGGTTTCTCAATGTAGCCCTG  200

seq1  GCTGACCTGGAATCTGCCTCTGCCTCCTGAGTGCAGGGTTTGAAGGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTGGAATCTGCCTCTGCCTCCTGAGTGCAGGGTTTGAAGGTGTT  250

seq1  CAGCACCATGTCCAGCCAGAATCTCACTCTTAACTGAAACGGACCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCATGTCCAGCCAGAATCTCACTCTTAACTGAAACGGACCCAGAA  300

seq1  CTCATTATGTAGTTCACATGCTGAGCCTCTGGAGTGGTGGGGTTACGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATGTAGTTCACATGCTGAGCCTCTGGAGTGGTGGGGTTACGGGT  350

seq1  GTGCGCCAATATGCTTATCTAGATTAAATACTGTGTGTGTGTGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCAATATGCTTATCTAGATTAAATACTGTGTGTGTGTGTGTGTGT  400

seq1  GTGTGTGTGTGTG  413
      ||||||| |||||
seq2  GTGTGTGAGTGTG  413

seq1: chr11_106078924_106079907
seq2: B6Ng01-176F21.g_66_1055 (reverse)

seq1  CTTGAGCCTACCTGATTT-GAATAATATATATGGGTTGAAAACCTGTATC  49
      ||||||||| |||||||| ||||||||||||||||||| |||||||||||
seq2  CTTGAGCCTTCCTGATTTGGAATAATATATATGGGTTG-AAACCTGTATC  49

seq1  AGAATCGTAAGG-AAAAAATTATACTAGTCAAGTTT-GGAAGCATATATA  97
      |||||||| ||| ||||||||||||||||||||||| |||||||||||||
seq2  AGAATCGTTAGGAAAAAAATTATACTAGTCAAGTTTGGGAAGCATATATA  99

seq1  AACTTTTCTGTCATCTTAGCTTTTTCCCTTTTCACCCCTA-CCCCTTTAG  146
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACTTTTCTGTCATCTTAGCTTTTTCCCTTTTCACCCCTACCCCCTTTAG  149

seq1  GCTGTGGTTTTGT-GGCTTTCCTACTGTGTTGTTGTTGTTGTTACTATTT  195
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTTTTGTGGGCTTTCCTACTGTGTTGTTGTTGTTGTTACTATTT  199

seq1  GCAAGTGTTA-TTTCTGTATTGTCTCCTACACATACCTG-AACAGCTATT  243
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  GCAAGTGTTATTTTCTGTATTGTCTCCTACACATACCTGAAACAGCTATT  249

seq1  AAGCTGAACAATTATTAAGTAGAGTAGATATTATGTCTTTTTCTTTTTCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAACAATTATTAAGTAGAGTAGATATTATGTCTTTTTCTTTTTCT  299

seq1  TTTTTTTCTTCCTTCGAGACAGGGTTTCTCTGTAGCCCTGGCTGTCCTGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTCCTTCGAGACAGGGTTTCTCTGTAGCCCTGGCTGTCCTGG  349

seq1  AATTCACTCTATAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTCTATAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCCT  399

seq1  CTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCATCACCACCCGTCGTGGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCATCACCACCCGTCGTGGG  449

seq1  TGGTAGGTTATGTCTTAATTCGTTTAAACTTTGTAGAGTCCAATCCTGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGTTATGTCTTAATTCGTTTAAACTTTGTAGAGTCCAATCCTGTT  499

seq1  CTGACAGGTGGGAAGTGAACAGTAAGTCTGATATAAAAATTTATTCTTCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGTGGGAAGTGAACAGTAAGTCTGATATAAAAATTTATTCTTCC  549

seq1  AGGGCGAAAATGTTATTTTACTTTACCTAGAAGGAGAATTGCAGTGATTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGAAAATGTTATTTTACTTTACCTAGAAGGAGAATTGCAGTGATTC  599

seq1  ATTTAAAAATAAAATTGTTATTGCCTTGCCTCTGTGCCTGTTCTCTCTTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATAAAATTGTTATTGCCTTGCCTCTGTGCCTGTTCTCTCTTG  649

seq1  AATTGCTTAAGTGTTAAATCTATGACCACTGCACTCATGAGACTCTTTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTAAGTGTTAAATCTATGACCACTGCACTCATGAGACTCTTTAT  699

seq1  ATACATTTTTTGGACGTATTATTTTGTTTGTCTTTGTTTTTGTTTTTTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTTTTGGACGTATTATTTTGTTTGTCTTTGTTTTTGTTTTTTCA  749

seq1  AGACAGGGCTTTTCTGTATAGCTCTTGTTGTTCTGGAACTCACTCTGTAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGCTTTTCTGTATAGCTCTTGTTGTTCTGGAACTCACTCTGTAG  799

seq1  ACCAGGCTGGCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG  849

seq1  CTGGGATTAAAGGCATGCGCCACCACTGCCCGGCACGTTATTTCTTTATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGCATGCGCCACCACTGCCCGGCACGTTATTTCTTTATG  899

seq1  TATGTTTATCATGCCCTCCTGTAGAGGTTAGAGGCCAACCTCTGGGAGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATCATGCCCTCCTGTAGAGGTTAGAGGCCAACCTCTGGGAGTT  949

seq1  GGTTTTCTCCTTCCACTATGTAGGTCCTCAGGATGGAATTC  984
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCCTTCCACTATGTAGGTCCTCAGGATGGAATTC  990