BAC Information

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BAC

Clone NameB6Ng01-176P03
Chromosome11 (Build37)
Map Location 47,630,398 - 47,790,340
singlet/doubletdoublet
Overlap genenone
Upstream geneTimd4, Sgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P03.bB6Ng01-176P03.g
ACCGA004347GA004348
length1,1331,112
definitionB6Ng01-176P03.b B6Ng01-176P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,789,194 - 47,790,340)(47,630,398 - 47,631,512)
sequence
gaattcagtatttttcagtgaaaatcgtttgcctattaatcctgcttaga
gtataagaatccctgaaatgtacccagtgaacaagcatatgaagagacat
gtatgtctaaagaaatgcatgaggtcctgatcgcagtagcctacaagtgc
caggtaatagcaggggtaggggtggcttcatggaggctactgggcagagc
actcaatgcaagtgagattttaatcagttgagaatttccataccaactaa
agtaaggggaaattatacttcttattgaaagttataggtcattaccattt
taaaaccagtttgtttgatcaaagcaggaggctgaaattaccccgcatgg
agaattaatagcatctccccgccccacttatggaaccttctcttatgatt
ttcccagcattccctctacctttacaaatagagaactaaagggagactga
gtacacatgctggaagcgcattaatccatttttgttgaataaaatatata
ctcttaatagcaaaagcaaacctcaaatcctaccaagacttccatttcag
atatgatggagaatgttttaagatagacacatgaatcacatgccacttaa
ttttgggaaaatatttatgttggatgatatttatgtgtgcatctatttct
attaaggaaaaccatggcaatggaaaatactatctgggcagttctctttc
agctgtgcgcatcactcagagaggaatcctttttgcactcaaattgggcc
tgccatctctaaagagggcagttgagataatatgataaactggcccatgc
atccaatcttagctcatcagggctgtgtcagagctgacatttccgtacag
tgtgacttgatgctctgattacaaattggtcttgagcagccagaggcttt
gtaattgcattctctgagggattgggcttgtatcattaggtatgttttag
tttttgaaacccagaggagaaatatgttcctgattctattttctatttca
gaacatatcagaaactgcctcatccagaaagatgtagttatataatgcaa
atagaggttttaaatctttttgagcacatggataacattttccatcttct
tgtgttgggagttttaggtaacctttattaatt

gaattcccttcatgaatggcaggcaaacacattgagcctgttgtgcgacc
ttcttgtggcagcatgtgctgtaagccatacagcttcttctgtcccaaca
ttcagctgaatagtcttgaactgattagtgctgatgtgggagacagatca
ggggtcagagctatcaactgtgaagtagttctactaaggccctgggtccc
ttgacacttctgccactttatagcacccccatggccttcatattacttag
tcctggttctcttcccttctttgatacttggtgggctcttttatatcgtc
ctgagaaatttcttgtaactataagtacaggtataatgggtttactgtat
ccaagaaacatacatcataaacttcatttcacaagttcctgccttcatga
ggattctgctttgtccatgatgctggctctctgggaccctcaggttgcac
atggttcatcaagtggctataaggtcacgattactgagtgcatttatcat
gggtcttcatcacctgcttgtctgaaatctgacgattagctgtagaatct
gcattttaatctgaattaagattaattctgacacaggtggtccctaaaag
atgaagctacagcccatgaacaccagcatttgctcctactctgctgcctt
cttatgtcagtatttccttcagttttttttaaaaaaaatgtatttattta
ttcattcatttatttattatgtggatgaaggagtggcgtgcctcagtcta
catagactccgttcaattcctctcctaagtgggttccgagaattgaactc
aggttattagctaggctggaaaatcccttaagtctacagggccaccttgg
tggccttgtctcaatctttcttagtttatgcctctgagagacaaaagcag
tttccttccagctttctttacaggtccagcccagtccttttattgttagt
gaaaagctgaggtccagttggctgagaaacagcacagggacaccacagtt
ccacaccagacttcccttgaagaggactgtggcacagctttgcttcagca
gcctgaatggatgcatgcacttgggcctacaggacctaaaaaaagacagg
cctgaccactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47789194_47790340
seq2: B6Ng01-176P03.b_32_1164 (reverse)

seq1  AATTAATAAA-GTTACTTAAAACTTCCAACACCAAGAAGGATGAAAAATG  49
      |||||||||| ||||| ||||||| |||||| |||||| |||| ||||||
seq2  AATTAATAAAGGTTACCTAAAACTCCCAACA-CAAGAA-GATGGAAAATG  48

seq1  TTATCAATGTTGCCTCAAAAAAGATTTAAAAACTCTTAATTTTGCATATA  99
      ||||| ||||   ||| |||||||||||||| ||||    |||||||   
seq2  TTATCCATGT--GCTC-AAAAAGATTTAAAACCTCT---ATTTGCATTAT  92

seq1  ATAACTTACATCCTTTTCTGGATGAGGGCCAGTTTCTGATATGTTCTGAA  149
      ||||| ||||||  |||||||||||||  |||||||||||||||||||||
seq2  ATAAC-TACATC--TTTCTGGATGAGG--CAGTTTCTGATATGTTCTGAA  137

seq1  ATAAGAAAATAGAATCAGGAACATATTTCTTCCTCTGGGTTTCAAAAACT  199
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AT-AGAAAATAGAATCAGGAACATATTTC-TCCTCTGGGTTTCAAAAACT  185

seq1  AAAACATACCTAATGATACAAGCCCAATCCCTCAGAGAATGCAATTACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATACCTAATGATACAAGCCCAATCCCTCAGAGAATGCAATTACAA  235

seq1  AGCCTCTGGCTGCTCAAGACCAATTTGTAATCAGAGCATCAAGTCACACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGGCTGCTCAAGACCAATTTGTAATCAGAGCATCAAGTCACACT  285

seq1  GTACGGAAATGTCAGCTCTGACACAGCCCTGATGAGCTAAGATTGGATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGGAAATGTCAGCTCTGACACAGCCCTGATGAGCTAAGATTGGATGC  335

seq1  ATGGGCCAGTTTATCATATTATCTCAACTGCCCTCTTTAGAGATGGCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCAGTTTATCATATTATCTCAACTGCCCTCTTTAGAGATGGCAGG  385

seq1  CCCAATTTGAGTGCAAAAAGGATTCCTCTCTGAGTGATGCGCACAGCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTTGAGTGCAAAAAGGATTCCTCTCTGAGTGATGCGCACAGCTGA  435

seq1  AAGAGAACTGCCCAGATAGTATTTTCCATTGCCATGGTTTTCCTTAATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACTGCCCAGATAGTATTTTCCATTGCCATGGTTTTCCTTAATAG  485

seq1  AAATAGATGCACACATAAATATCATCCAACATAAATATTTTCCCAAAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATGCACACATAAATATCATCCAACATAAATATTTTCCCAAAATT  535

seq1  AAGTGGCATGTGATTCATGTGTCTATCTTAAAACATTCTCCATCATATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCATGTGATTCATGTGTCTATCTTAAAACATTCTCCATCATATCT  585

seq1  GAAATGGAAGTCTTGGTAGGATTTGAGGTTTGCTTTTGCTATTAAGAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAAGTCTTGGTAGGATTTGAGGTTTGCTTTTGCTATTAAGAGTA  635

seq1  TATATTTTATTCAACAAAAATGGATTAATGCGCTTCCAGCATGTGTACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTATTCAACAAAAATGGATTAATGCGCTTCCAGCATGTGTACTC  685

seq1  AGTCTCCCTTTAGTTCTCTATTTGTAAAGGTAGAGGGAATGCTGGGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCTTTAGTTCTCTATTTGTAAAGGTAGAGGGAATGCTGGGAAAA  735

seq1  TCATAAGAGAAGGTTCCATAAGTGGGGCGGGGAGATGCTATTAATTCTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGAGAAGGTTCCATAAGTGGGGCGGGGAGATGCTATTAATTCTCC  785

seq1  ATGCGGGGTAATTTCAGCCTCCTGCTTTGATCAAACAAACTGGTTTTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGGGTAATTTCAGCCTCCTGCTTTGATCAAACAAACTGGTTTTAAA  835

seq1  ATGGTAATGACCTATAACTTTCAATAAGAAGTATAATTTCCCCTTACTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAATGACCTATAACTTTCAATAAGAAGTATAATTTCCCCTTACTTT  885

seq1  AGTTGGTATGGAAATTCTCAACTGATTAAAATCTCACTTGCATTGAGTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTATGGAAATTCTCAACTGATTAAAATCTCACTTGCATTGAGTGC  935

seq1  TCTGCCCAGTAGCCTCCATGAAGCCACCCCTACCCCTGCTATTACCTGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCAGTAGCCTCCATGAAGCCACCCCTACCCCTGCTATTACCTGGC  985

seq1  ACTTGTAGGCTACTGCGATCAGGACCTCATGCATTTCTTTAGACATACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAGGCTACTGCGATCAGGACCTCATGCATTTCTTTAGACATACAT  1035

seq1  GTCTCTTCATATGCTTGTTCACTGGGTACATTTCAGGGATTCTTATACTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCATATGCTTGTTCACTGGGTACATTTCAGGGATTCTTATACTC  1085

seq1  TAAGCAGGATTAATAGGCAAACGATTTTCACTGAAAAATACTGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGATTAATAGGCAAACGATTTTCACTGAAAAATACTGAATTC  1133


seq1: chr11_47630398_47631512
seq2: B6Ng01-176P03.g_64_1175

seq1  GAATTCCCTTCATGAATGGCAGGCAAACACATTGAGCCTGTTGTGCGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCATGAATGGCAGGCAAACACATTGAGCCTGTTGTGCGACC  50

seq1  TTCTTGTGGCAGCATGTGCTGTAAGCCATACAGCTTCTTCTGTCCCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGGCAGCATGTGCTGTAAGCCATACAGCTTCTTCTGTCCCAACA  100

seq1  TTCAGCTGAATAGTCTTGAACTGATTAGTGCTGATGTGGGAGACAGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGAATAGTCTTGAACTGATTAGTGCTGATGTGGGAGACAGATCA  150

seq1  GGGGTCAGAGCTATCAACTGTGAAGTAGTTCTACTAAGGCCCTGGGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGAGCTATCAACTGTGAAGTAGTTCTACTAAGGCCCTGGGTCCC  200

seq1  TTGACACTTCTGCCACTTTATAGCACCCCCATGGCCTTCATATTACTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACTTCTGCCACTTTATAGCACCCCCATGGCCTTCATATTACTTAG  250

seq1  TCCTGGTTCTCTTCCCTTCTTTGATACTTGGTGGGCTCTTTTATATCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTCTCTTCCCTTCTTTGATACTTGGTGGGCTCTTTTATATCGTC  300

seq1  CTGAGAAATTTCTTGTAACTATAAGTACAGGTATAATGGGTTTACTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAATTTCTTGTAACTATAAGTACAGGTATAATGGGTTTACTGTAT  350

seq1  CCAAGAAACATACATCATAAACTTCATTTCACAAGTTCCTGCCTTCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAACATACATCATAAACTTCATTTCACAAGTTCCTGCCTTCATGA  400

seq1  GGATTCTGCTTTGTCCATGATGCTGGCTCTCTGGGACCCTCAGGTTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGCTTTGTCCATGATGCTGGCTCTCTGGGACCCTCAGGTTGCAC  450

seq1  ATGGTTCATCAAGTGGCTATAAGGTCACGATTACTGAGTGCATTTATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCATCAAGTGGCTATAAGGTCACGATTACTGAGTGCATTTATCAT  500

seq1  GGGTCTTCATCACCTGCTTGTCTGAAATCTGACGATTAGCTGTAGAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTCATCACCTGCTTGTCTGAAATCTGACGATTAGCTGTAGAATCT  550

seq1  GCATTTTAATCTGAATTAAGATTAATTCTGACACAGGTGGTCCCTAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAATCTGAATTAAGATTAATTCTGACACAGGTGGTCCCTAAAAG  600

seq1  ATGAAGCTACAGCCCATGAACACCAGCATTTGCTCCTACTCTGCTGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTACAGCCCATGAACACCAGCATTTGCTCCTACTCTGCTGCCTT  650

seq1  CTTATGTCAGTATTTCCTTCAGTTTTTTTTAAAAAAAATGTATTTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTCAGTATTTCCTTCAGTTTTTTTTAAAAAAAATGTATTTATTTA  700

seq1  TTCATTCATTTATTTATTATGTGGATGAAGGAGTGGCGTGCCTCAGTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATTTATTTATTATGTGGATGAAGGAGTGGCGTGCCTCAGTCTA  750

seq1  CATAGACTCCGTTCAATTCCTCTCCTAAGTGGGTTCCGAGAATTGAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTCCGTTCAATTCCTCTCCTAAGTGGGTTCCGAGAATTGAACTC  800

seq1  AGGTTATTAGCTAGGCTGGAAAATCCCTT-AGTCTACAGGGCCACCTTGG  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGTTATTAGCTAGGCTGGAAAATCCCTTAAGTCTACAGGGCCACCTTGG  850

seq1  TGGCCCTTGTCTCAATCTTTCTTAGTTTATGCCTCTGAGAGACAAAAGCA  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-CCTTGTCTCAATCTTTCTTAGTTTATGCCTCTGAGAGACAAAAGCA  899

seq1  GTTTCCTTCCAGCTTTCTTTACAGGTCCAGCCCAGTCCTTTTATTGTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTCCAGCTTTCTTTACAGGTCCAGCCCAGTCCTTTTATTGTTAG  949

seq1  TTGAAAAGCTGAGGTCCAGTTGGCTGAGAAACAGCACAGGGACA-CACAG  998
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  -TGAAAAGCTGAGGTCCAGTTGGCTGAGAAACAGCACAGGGACACCACAG  998

seq1  TT-CACACCAGACTTCCCCTGAAGAGGAACTGTGGCACAGCTTTGC-TCA  1046
      || ||||||||||||||| |||||||| |||||||||||||||||| |||
seq2  TTCCACACCAGACTTCCCTTGAAGAGG-ACTGTGGCACAGCTTTGCTTCA  1047

seq1  GCAGGCTGAATGGGATGCAGTGCACTTGGGGCTACAGGAGCTAGAAGAGA  1096
      |||| |||||| ||||||| |||||||||| |||||||| ||| || |  
seq2  GCAGCCTGAAT-GGATGCA-TGCACTTGGGCCTACAGGACCTAAAAAAAG  1095

seq1  GCAGGCGCCTGACCACTCT  1115
       |||  |||||||||||||
seq2  ACAG--GCCTGACCACTCT  1112


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