BAC Information

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BAC

Clone NameB6Ng01-177D20
Chromosome11 (Build37)
Map Location 19,925,888 - 20,034,952
singlet/doubletdoublet
Overlap geneActr2
Upstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2
Downstream geneRab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177D20.bB6Ng01-177D20.g
ACCGA004564GA004565
length1,048994
definitionB6Ng01-177D20.b B6Ng01-177D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,033,906 - 20,034,952)(19,925,888 - 19,926,885)
sequence
gaattcttctgacaaatggagattctccagatacttaaaagttacactca
tataagaatttagcaaggcctaggaaatagaggggttgtggtattgcatt
attcatgaggtctgctaagagcagaaccccctggtgctagccttcacaag
gttcaaaggtatagcactagagtgtgaaatccttacctgtcattaagttg
accctaggcaggactgctttatctttactgtaaacatttacctggttcct
gtaaatctttttgaagtcattcctttgttttgtgtcaggcaacttcaatg
tactttgcctgctgtgacttcctaccccttttattttctgtactatataa
gactggtgttcactttgtgacaatacattcagattctacacaatctcgtg
tgttggtctgtctgtcacccgccaactccttgcccatctgcacccagaga
cccgttccgcgcagacaaagggacccagagggtctgcggcaagaaagacc
atccacctcttgccttgatgggatcaaggtctatatttaagaggctagct
caaacatgagcatctactccaaatctagcaaatgcttggtcctacttgct
taaaagaagaatgaataatcagatacagtctcagctggtgttaattaaaa
tgcacagtctcaagtaggagacacatattaaataagcaagtaggcagatg
tgggtaatgctttaaattatacatggaaggaaagaagtcctgttagggaa
gggggtagtgtgcatagacttagagcagtggctctcaacctgtaggtcac
gacctctttggtaaacctctatctccaaaaatatttacattgtaactcat
aacagtagaaatattacagttattgaaagtagcaatgatacaatttttat
ggtggggaatgacttactggaaggagggcacagtcaaaggattggatggt
atggtgtgggcatgctattaccaccagcacctgggataacaaaggtcaga
ggatccaggagtcaagtcatttctggctaacaggcagttcaagccagc
gaattccaggagcccgagctagcgagctagcgtgtccaaaggccatcttt
ccaggaagccaatagagatttacataggattagcactagctatcaggtgc
cttctcacagaggggggcctgcacaaagagaacacatctcagagcgcatc
acttctttctagggccactccacactgatgaggttcatctgttctgctcg
gggacatcacatgtggagaggctgcccaaagaaaacagatccccccctcg
tggtggaaaagggtcaggtgaggtgagataggatgtgaaggctggcctgg
acaagtacagccctcagaggttccgtaacgcgatccgcaggacccaatca
cttcctcggttccttgtttgttctggccctgaggaaagatgggttgctga
agaagacagcctgctcactgcacagtaggccgaagcacatggcagacagt
ttgttaatgaatccacaattcactccatacttctttttctaactgcacat
ttcggtttggttgtgctttcttcctgacacttatgaatatcttaagtcaa
tgatgcctgcagaggcacacagctcgctggactctgggcagacagaatgt
acaacgtggagaaaagccagtgacctgtcaaagcagttctgtggacagag
ctggtaccagctcagaggaacttgcccaagatagagacacagtatattca
ggggactgtctgaactcgagacacgttcccctggatggtggacatccatc
cccaaaattaggccactcacttccaaggggaaagcatgggctctgaagga
cctgcaggaacagttgcagtttgtcatggaactcaggcaggcttgtaacc
gacacccgagctcgtgccagccagcagagagctacagtgaacttacttgc
agcctcctggcttttggttatgaaataaacgcttactacccccacactct
gtggaatctgtttctctcttagcagggctggatcaacctagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_20033906_20034952
seq2: B6Ng01-177D20.b_48_1095 (reverse)

seq1  GCTGGCCTTGAACTTGCCTTGTAGCCACGAATGACCTTGAACTCCT-GAT  49
      ||||| ||||||| |||||  ||||||  ||||| |||| |||||| |||
seq2  GCTGG-CTTGAAC-TGCCTGTTAGCCAGAAATGA-CTTG-ACTCCTGGAT  46

seq1  CCTCTGACCTCTG-TCTCCCAGGTGCT-GTGGTAATAAGCATGCCCACAC  97
      |||||||||| || | ||||||||||| |||||||| |||||||||||||
seq2  CCTCTGACCTTTGTTATCCCAGGTGCTGGTGGTAAT-AGCATGCCCACAC  95

seq1  CTAACACTCCATTCTTTTGACTGTGCCCTCC-TCCAGTAAGTCATTCCCA  146
      |  ||  |||| || |||||||||||||||| ||||||||||||||||| 
seq2  CATACCATCCAATCCTTTGACTGTGCCCTCCTTCCAGTAAGTCATTCCCC  145

seq1  ACCAT-AAAATTGTATCATTGCTACTTTC-ATAACTGTAATATTTCTACT  194
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCATAAAAATTGTATCATTGCTACTTTCAATAACTGTAATATTTCTACT  195

seq1  GTTATGAGTTACAATGTAATTATTTTTGGAGATAGAGGTTTACCAAAGAG  244
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTATGAGTTACAATGTAAATATTTTTGGAGATAGAGGTTTACCAAAGAG  245

seq1  GTCGTGACCTACAGGTTGAGAGCCACTGCTCTAAGTCTATGCACACTACC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGACCTACAGGTTGAGAGCCACTGCTCTAAGTCTATGCACACTACC  295

seq1  CCCTTCCCTAACAGGACTTCTTTCCTTCCATGTATAATTTAAAGCATTAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCTAACAGGACTTCTTTCCTTCCATGTATAATTTAAAGCATTAC  345

seq1  CCACATCTGCCTACTTGCTTATTTAATATGTGTCTCCTACTTGAGACTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTGCCTACTTGCTTATTTAATATGTGTCTCCTACTTGAGACTGT  395

seq1  GCATTTTAATTAACACCAGCTGAGACTGTATCTGATTATTCATTCTTCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAATTAACACCAGCTGAGACTGTATCTGATTATTCATTCTTCTT  445

seq1  TTAAGCAAGTAGGACCAAGCATTTGCTAGATTTGGAGTAGATGCTCATGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAGTAGGACCAAGCATTTGCTAGATTTGGAGTAGATGCTCATGT  495

seq1  TTGAGCTAGCCTCTTAAATATAGACCTTGATCCCATCAAGGCAAGAGGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTAGCCTCTTAAATATAGACCTTGATCCCATCAAGGCAAGAGGTG  545

seq1  GATGGTCTTTCTTGCCGCAGACCCTCTGGGTCCCTTTGTCTGCGCGGAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCTTTCTTGCCGCAGACCCTCTGGGTCCCTTTGTCTGCGCGGAAC  595

seq1  GGGTCTCTGGGTGCAGATGGGCAAGGAGTTGGCGGGTGACAGACAGACCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTGGGTGCAGATGGGCAAGGAGTTGGCGGGTGACAGACAGACCA  645

seq1  ACACACGAGATTGTGTAGAATCTGAATGTATTGTCACAAAGTGAACACCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGAGATTGTGTAGAATCTGAATGTATTGTCACAAAGTGAACACCA  695

seq1  GTCTTATATAGTACAGAAAATAAAAGGGGTAGGAAGTCACAGCAGGCAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATATAGTACAGAAAATAAAAGGGGTAGGAAGTCACAGCAGGCAAA  745

seq1  GTACATTGAAGTTGCCTGACACAAAACAAAGGAATGACTTCAAAAAGATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTGAAGTTGCCTGACACAAAACAAAGGAATGACTTCAAAAAGATT  795

seq1  TACAGGAACCAGGTAAATGTTTACAGTAAAGATAAAGCAGTCCTGCCTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAACCAGGTAAATGTTTACAGTAAAGATAAAGCAGTCCTGCCTAG  845

seq1  GGTCAACTTAATGACAGGTAAGGATTTCACACTCTAGTGCTATACCTTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTTAATGACAGGTAAGGATTTCACACTCTAGTGCTATACCTTTG  895

seq1  AACCTTGTGAAGGCTAGCACCAGGGGGTTCTGCTCTTAGCAGACCTCATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTGAAGGCTAGCACCAGGGGGTTCTGCTCTTAGCAGACCTCATG  945

seq1  AATAATGCAATACCACAACCCCTCTATTTCCTAGGCCTTGCTAAATTCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCAATACCACAACCCCTCTATTTCCTAGGCCTTGCTAAATTCTT  995

seq1  ATATGAGTGTAACTTTTAAGTATCTGGAGAATCTCCATTTGTCAGAAGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTGTAACTTTTAAGTATCTGGAGAATCTCCATTTGTCAGAAGAA  1045

seq1  TTC  1047
      |||
seq2  TTC  1048

seq1: chr11_19925888_19926885
seq2: B6Ng01-177D20.g_65_1058

seq1  GAATTCCAGGAGCCCGAGCTAGCGAGCTAGCGTGTCCAAAGGCCATCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGCCCGAGCTAGCGAGCTAGCGTGTCCAAAGGCCATCTTT  50

seq1  CCAGGAAGCCAATAGAGATTTACATAGGATTAGCACTAGCTATCAGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGCCAATAGAGATTTACATAGGATTAGCACTAGCTATCAGGTGC  100

seq1  CTTCTCACAGAGGGGGGCCTGCACAAAGAGAACACATCTCAGAGCGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACAGAGGGGGGCCTGCACAAAGAGAACACATCTCAGAGCGCATC  150

seq1  ACTTCTTTCTAGGGCCACTCCACACTGATGAGGTTCATCTGTTCTGCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTCTAGGGCCACTCCACACTGATGAGGTTCATCTGTTCTGCTCG  200

seq1  GGGACATCACATGTGGAGAGGCTGCCCAAAGAAAACAGATCCCCCCCTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATCACATGTGGAGAGGCTGCCCAAAGAAAACAGATCCCCCCCTCG  250

seq1  TGGTGGAAAAGGGTCAGGTGAGGTGAGATAGGATGTGAAGGCTGGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAAAGGGTCAGGTGAGGTGAGATAGGATGTGAAGGCTGGCCTGG  300

seq1  ACAAGTACAGCCCTCAGAGGTTCCGTAACGCGATCCGCAGGACCCAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTACAGCCCTCAGAGGTTCCGTAACGCGATCCGCAGGACCCAATCA  350

seq1  CTTCCTCGGTTCCTTGTTTGTTCTGGCCCTGAGGAAAGATGGGTTGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCGGTTCCTTGTTTGTTCTGGCCCTGAGGAAAGATGGGTTGCTGA  400

seq1  AGAAGACAGCCTGCTCACTGCACAGTAGGCCGAAGCACATGGCAGACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGCCTGCTCACTGCACAGTAGGCCGAAGCACATGGCAGACAGT  450

seq1  TTGTTAATGAATCCACAATTCACTCCATACTTCTTTTTCTAACTGCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATGAATCCACAATTCACTCCATACTTCTTTTTCTAACTGCACAT  500

seq1  TTCGGTTTGGTTGTGCTTTCTTCCTGACACTTATGAATATCTTAAGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTTTGGTTGTGCTTTCTTCCTGACACTTATGAATATCTTAAGTCAA  550

seq1  TGATGCCTGCAGAGGCACACAGCTCGCTGGACTCTGGGCAGACAGAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTGCAGAGGCACACAGCTCGCTGGACTCTGGGCAGACAGAATGT  600

seq1  ACAACGTGGAGAAAAGCCAGTGACCTGTCAAAGCAGTTCTGTGGACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTGGAGAAAAGCCAGTGACCTGTCAAAGCAGTTCTGTGGACAGAG  650

seq1  CTGGTACCAGCTCAGAGGAACTTGCCCAAGATAGAGACACAGTATATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACCAGCTCAGAGGAACTTGCCCAAGATAGAGACACAGTATATTCA  700

seq1  GGGGACTGTCTGAACTCGAGACACGTTCCCCTGGATGGTGGACATCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTGTCTGAACTCGAGACACGTTCCCCTGGATGGTGGACATCCATC  750

seq1  CCCAAAATTAGGCCACTCACTTCCAAGGGGAAAGCATGGGCTCTGAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATTAGGCCACTCACTTCCAAGGGGAAAGCATGGGCTCTGAAGGA  800

seq1  CCTGCAGG-ACAGTTGCAGTTTGTCATGGAACACAGGCAGGCTTGTAAAC  849
      |||||||| ||||||||||||||||||||||| ||||||||||||| |||
seq2  CCTGCAGGAACAGTTGCAGTTTGTCATGGAACTCAGGCAGGCTTGT-AAC  849

seq1  GGACACCCGAGCTCGTGCCAG-CAGC-CAGAGCTACAGGTGACCTTAC-T  896
       |||||||||||||||||||| ||||  ||||||||| |||| ||||| |
seq2  CGACACCCGAGCTCGTGCCAGCCAGCAGAGAGCTACA-GTGAACTTACTT  898

seq1  GCAGGCCTCTGGGCTTTGTGGTAGTGAAATAAGACGGCTATCTA-CCCCA  945
      ||| |||||  |||||| ||||  |||||||| || |||  ||| |||||
seq2  GCA-GCCTCCTGGCTTT-TGGTTATGAAATAA-AC-GCTTACTACCCCCA  944

seq1  CAC-CTGTTGGATCTGTTTTCTCTCTTAGCAGTGCTGGGAATCAAACCTA  994
      ||| |||| | ||||| ||||||||||||||| |||||  ||| ||||||
seq2  CACTCTGTGGAATCTG-TTTCTCTCTTAGCAGGGCTGG--ATC-AACCTA  990

seq1  GGGC  998
      ||||
seq2  GGGC  994