BAC Information

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BAC

Clone NameB6Ng01-178A07
Chromosome11 (Build37)
Map Location 76,213,212 - 76,346,714
singlet/doubletdoublet
Overlap geneTimm22, Abr
Upstream geneSmyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn
Downstream geneLOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178A07.bB6Ng01-178A07.g
ACCGA005127GA005128
length9391,088
definitionB6Ng01-178A07.b B6Ng01-178A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,213,212 - 76,214,150)(76,345,608 - 76,346,714)
sequence
gaattcataaatacttgtgggctgattacaagtcacagtgtgggatttca
gtccacaggtcgctggaaccattccccgatgggaaatggctctcttccat
ttccgtaaatgtatgcaacagatggcgcagcgtttccaaatcagtattgg
ctgctctcctgacttcatagcttatctcaggtctgctagtagttgagaga
gaaaaaaaattttaaccccatcttgaaagatgctttccaatgcctaggaa
agaaccctgattaaacaaatgatctgtggcaagtttcctaggcacgaaca
caggacaaaatgtacactattacacatacacatgcatacacacattttta
aaaaagaggaccattcatgtgtatcagctcagctactaacaacagtgaca
ttttaagaggaaaacccaaccactggctatccttcatggctttcgaggtt
atttctttcgtatctgccgccatctaatggaagaatgaaagagagaactc
taccaacacataagatgcaaaagattaaagtgaaagcagcagaatgcttt
aattacacaggcttcctctactgtaacacacacacacacacaaacacaca
cacacagagagcacaaagtgtatgacacaagaccatttaaatttcagaat
ataacctcatacttctagtagaaatgccccaaagtcctcagtgtgtttaa
ggtagagagaaaaattgtttaagttttcaggcctgtaaaatatcatcaca
tgaaccaatgaaagtgttaaagacaatcttcacacactggtgccacaaat
ggtggctcacgcctttaatcccagcacccaggaagcacatctttgtgagt
ttgagggcaacctggtctacaacagccaggcttacacaatgacaccctgc
ttcaaaacactaaataaattgtcttattcgtgtgtgtgt
gaattcactgtgtagattgggctggccttaaattaacagatagctgtttg
cctctacttctcctgagagctagggttaatggcatgtactgtcatgcaca
gtcaagcaagagcttttggtatgccttaccaatgagccacctctccagct
tcgaattaaattttaaaaattattatcagtgtgtgtgtgtgtgtgtgtgt
tcgcatgcttgggcacacgtatgctatgctttgtttggagatcagaggac
aactttagggttctctccttctgattttacaggggccccaggtcttgaac
ttgtgttaccaggcttgtatggcaagttcttttattgcctaagccacctg
agttaacttcctaaatgagttccatttcactgttttatgtttggtaatcc
cgttgtgctggtgccatttgttgaaaagtctgttctttccctatagagta
gcattggcatccttgtcaggattcaaatgatgggaggcagtgctttcccc
aaatgtacgatgtcctgggcttaatccctgtaccagaaaacaatacaaaa
aatcagttggctacctgtagtgcccctttgggagactaaggcagagcagg
ttagatttgagcccatttaggctacagaaagagactgaaaagcaaaagca
aaaaaaaaaaaaaaaagtccttgatcatagctatataggattatttccgg
actcttcagctctgccctgaagatgtttattggaagccgctgccagcagt
tttccacttctctgtagtcttggaagctcccgcaggacacaggacgagtt
actgggcatcccatggtgaacgcttttcccaagaggctctcccagctaat
catttcccgtatctgtcaggtggccagggaggtggcagtgaggtgcccca
gtgcaggcctctgccagggtgcaggtcccagagcaggcctgttggtgtga
atctcagctactgattgggtggtgccctgatgccctggtaggagagctcc
agaccaggtgggaaagagagcagcagctgagggaggcgtctggcactaca
gcattgcactgacgtgctgcacggaggcgaatcctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_76213212_76214150
seq2: B6Ng01-178A07.b_49_987

seq1  GAATTCATAAATACTTGTGGGCTGATTACAAGTCACAGTGTGGGATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATACTTGTGGGCTGATTACAAGTCACAGTGTGGGATTTCA  50

seq1  GTCCACAGGTCGCTGGAACCATTCCCCGATGGGAAATGGCTCTCTTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAGGTCGCTGGAACCATTCCCCGATGGGAAATGGCTCTCTTCCAT  100

seq1  TTCCGTAAATGTATGCAACAGATGGCGCAGCGTTTCCAAATCAGTATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTAAATGTATGCAACAGATGGCGCAGCGTTTCCAAATCAGTATTGG  150

seq1  CTGCTCTCCTGACTTCATAGCTTATCTCAGGTCTGCTAGTAGTTGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCCTGACTTCATAGCTTATCTCAGGTCTGCTAGTAGTTGAGAGA  200

seq1  GAAAAAAAATTTTAACCCCATCTTGAAAGATGCTTTCCAATGCCTAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATTTTAACCCCATCTTGAAAGATGCTTTCCAATGCCTAGGAA  250

seq1  AGAACCCTGATTAAACAAATGATCTGTGGCAAGTTTCCTAGGCACGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTGATTAAACAAATGATCTGTGGCAAGTTTCCTAGGCACGAACA  300

seq1  CAGGACAAAATGTACACTATTACACATACACATGCATACACACATTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAAAATGTACACTATTACACATACACATGCATACACACATTTTTA  350

seq1  AAAAAGAGGACCATTCATGTGTATCAGCTCAGCTACTAACAACAGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGACCATTCATGTGTATCAGCTCAGCTACTAACAACAGTGACA  400

seq1  TTTTAAGAGGAAAACCCAACCACTGGCTATCCTTCATGGCTTTCGAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAGGAAAACCCAACCACTGGCTATCCTTCATGGCTTTCGAGGTT  450

seq1  ATTTCTTTCGTATCTGCCGCCATCTAATGGAAGAATGAAAGAGAGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCGTATCTGCCGCCATCTAATGGAAGAATGAAAGAGAGAACTC  500

seq1  TACCAACACATAAGATGCAAAAGATTAAAGTGAAAGCAGCAGAATGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACACATAAGATGCAAAAGATTAAAGTGAAAGCAGCAGAATGCTTT  550

seq1  AATTACACAGGCTTCCTCTACTGTAACACACACACACACACAAACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACAGGCTTCCTCTACTGTAACACACACACACACACAAACACACA  600

seq1  CACACAGAGAGCACAAAGTGTATGACACAAGACCATTTAAATTTCAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGAGCACAAAGTGTATGACACAAGACCATTTAAATTTCAGAAT  650

seq1  ATAACCTCATACTTCTAGTAGAAATGCCCCAAAGTCCTCAGTGTGTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCATACTTCTAGTAGAAATGCCCCAAAGTCCTCAGTGTGTTTAA  700

seq1  GGTAGAGAGAAAAATTGTTTAAGTTTTCAGGCCTGTAAAATATCATCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAGAAAAATTGTTTAAGTTTTCAGGCCTGTAAAATATCATCACA  750

seq1  TGAACCAATGAAAGTGTTAAAGACAATCTTCACACACTGGTGCCACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAATGAAAGTGTTAAAGACAATCTTCACACACTGGTGCCACAAAT  800

seq1  GGTGGCTCACGCCTTTAATCCCAGCACCCAGGAAGCACATCTTTGTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACGCCTTTAATCCCAGCACCCAGGAAGCACATCTTTGTGAGT  850

seq1  TTGAGGGCAACCTGGTCTACAACAGCCAGGCTTACACAATGACACCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCAACCTGGTCTACAACAGCCAGGCTTACACAATGACACCCTGC  900

seq1  TTCAAAACACTAAATAAATTGTCTTATTCGTGTGTGTGT  939
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACACTAAATAAATTGTCTTATTCGTGTGTGTGT  939

seq1: chr11_76345608_76346714
seq2: B6Ng01-178A07.g_63_1150 (reverse)

seq1  TGCAGGATTCGCCCTCCCGTGCAGGCCACCGTCAGTGCAAATGCCTGTAG  50
      |||||||||||||   ||||||||  || ||||||||| |||| ||||||
seq2  TGCAGGATTCGCC--TCCGTGCAG--CA-CGTCAGTGC-AATG-CTGTAG  43

seq1  TGCCAGGAACGCCTCCCTCCAGCTGGCTGGCTCTCTTTCCCACCTGGTCC  100
      ||||||  |||||||||| ||||| ||| |||||||||||||||||||| 
seq2  TGCCAG--ACGCCTCCCT-CAGCT-GCT-GCTCTCTTTCCCACCTGGTC-  87

seq1  TTGGAGCTCTCCTACCCAGGGCACTCAGGGCACCCACCCAATCAGTAGCT  150
       ||||||||||||| |||||||| |||||||| |||||||||||||||||
seq2  -TGGAGCTCTCCTA-CCAGGGCA-TCAGGGCA-CCACCCAATCAGTAGCT  133

seq1  GAGATTCACACCAACAGGCCCTGCTCTGGGACCTGCACCCTGGCAGAGGC  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGATTCACACCAACAGG-CCTGCTCTGGGACCTGCACCCTGGCAGAGGC  182

seq1  CTGCACTGGGGCACCTCACTGCCACCTCCCTGGCCACCCTGACAGATACG  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGCACTGGGGCACCTCACTGCCACCTCCCTGGCCA-CCTGACAGATACG  231

seq1  GGAAATGATTAGCTGGGAGAGCCTCTTGGGAAAAGCGTTCACCATGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGATTAGCTGGGAGAGCCTCTTGGGAAAAGCGTTCACCATGGGAT  281

seq1  GCCCAGTAACTCGTCCTGTGTCCTGCGGGAGCTTCCAAGACTACAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTAACTCGTCCTGTGTCCTGCGGGAGCTTCCAAGACTACAGAGAA  331

seq1  GTGGAAAACTGCTGGCAGCGGCTTCCAATAAACATCTTCAGGGCAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAACTGCTGGCAGCGGCTTCCAATAAACATCTTCAGGGCAGAGCT  381

seq1  GAAGAGTCCGGAAATAATCCTATATAGCTATGATCAAGGACTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCCGGAAATAATCCTATATAGCTATGATCAAGGACTTTTTTTTT  431

seq1  TTTTTTTTGCTTTTGCTTTTCAGTCTCTTTCTGTAGCCTAAATGGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGCTTTTGCTTTTCAGTCTCTTTCTGTAGCCTAAATGGGCTCA  481

seq1  AATCTAACCTGCTCTGCCTTAGTCTCCCAAAGGGGCACTACAGGTAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAACCTGCTCTGCCTTAGTCTCCCAAAGGGGCACTACAGGTAGCCA  531

seq1  ACTGATTTTTTGTATTGTTTTCTGGTACAGGGATTAAGCCCAGGACATCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTTTGTATTGTTTTCTGGTACAGGGATTAAGCCCAGGACATCG  581

seq1  TACATTTGGGGAAAGCACTGCCTCCCATCATTTGAATCCTGACAAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGGGGAAAGCACTGCCTCCCATCATTTGAATCCTGACAAGGATG  631

seq1  CCAATGCTACTCTATAGGGAAAGAACAGACTTTTCAACAAATGGCACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTACTCTATAGGGAAAGAACAGACTTTTCAACAAATGGCACCAG  681

seq1  CACAACGGGATTACCAAACATAAAACAGTGAAATGGAACTCATTTAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACGGGATTACCAAACATAAAACAGTGAAATGGAACTCATTTAGGAA  731

seq1  GTTAACTCAGGTGGCTTAGGCAATAAAAGAACTTGCCATACAAGCCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTCAGGTGGCTTAGGCAATAAAAGAACTTGCCATACAAGCCTGGT  781

seq1  AACACAAGTTCAAGACCTGGGGCCCCTGTAAAATCAGAAGGAGAGAACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGTTCAAGACCTGGGGCCCCTGTAAAATCAGAAGGAGAGAACCC  831

seq1  TAAAGTTGTCCTCTGATCTCCAAACAAAGCATAGCATACGTGTGCCCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTGTCCTCTGATCTCCAAACAAAGCATAGCATACGTGTGCCCAAG  881

seq1  CATGCGAACACACACACACACACACACACTGATAATAATTTTTAAAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGAACACACACACACACACACACACTGATAATAATTTTTAAAATTT  931

seq1  AATTCGAAGCTGGAGAGGTGGCTCATTGGTAAGGCATACCAAAAGCTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGAAGCTGGAGAGGTGGCTCATTGGTAAGGCATACCAAAAGCTCTT  981

seq1  GCTTGACTGTGCATGACAGTACATGCCATTAACCCTAGCTCTCAGGAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACTGTGCATGACAGTACATGCCATTAACCCTAGCTCTCAGGAGAA  1031

seq1  GTAGAGGCAAACAGCTATCTGTTAATTTAAGGCCAGCCCAATCTACACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCAAACAGCTATCTGTTAATTTAAGGCCAGCCCAATCTACACAG  1081

seq1  TGAATTC  1107
      |||||||
seq2  TGAATTC  1088