BAC Information

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BAC

Clone NameB6Ng01-178C04
Chromosome11 (Build37)
Map Location 96,648,293 - 96,765,317
singlet/doubletdoublet
Overlap geneCbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436
Upstream geneEG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11
Downstream geneCdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178C04.bB6Ng01-178C04.g
ACCGA005211GA005212
length6941,151
definitionB6Ng01-178C04.b B6Ng01-178C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,648,293 - 96,648,985)(96,764,165 - 96,765,317)
sequence
gaattcagcttaatgtgggggtggggggaatagcagcatttgatttggtc
attagaaatgcaattatatttgggataccagttctcatctctaatggaga
actcgatagattagctggagctgagctgcacattaaatctctaaccagga
gacaaaggctgaagtttcctatttaacaaatcaaagctggcctggccacc
aggtcccccagcatccctcagctctgacctgttaccccagaattcgttag
accaggggctgggctgcccttcccccagaggctcctcccagccattttgg
ttaccttcctaccccatttttaatgctttcccatcttggttgctgcacct
ggttcccctctttccttctctctgccttctcctcacatggcttaaaggca
tccagaacgggtgggttgtcgcctggttttggaggcttgacccaagtatt
ttttcaggaagaatcggtctcttttgactaatttttatataacattgtga
aactaaccctctttttcttttgtcttagttttttgaacagaaaagttgtc
actgtttcggggtttttttgatttttggtttgtttgtttgtttttttttt
taagacaagctctcactctgtaacctaggctacatagtctaaactgcgct
ttttttttttttttttttttttgggtttgctgttgtgtttgttt
gaattccaggccagccaggaccttgtcaaacaacaacaacaacaagaaga
cgggaagggctgatagtgggtgagggatgtaggtctgtgatggatggagt
tcttacttgcctaatgcgttccatccccagcaccagcaaaagtaaataaa
aggactcattggccagcttagactatacagtctagtatagtgaaatatac
tataccatgtagtgaaatcctgtgtcagcacccccaacagccctcagaaa
acacacaaaccaccaaaccaaacaaatacaaatgaactagactaaactcc
catcaccaggaggggaaggaggacgtgtcccctgtgaaccttcagggcct
gtctctccactcctttccctatctgaggagagcaaagggccattgcttgt
tctcctggcaatgccatttcattgtaggcccagttttttgctagcacagc
tgggcctcgtgagcgccacccacacactgggctttggacagactgccctg
catgcactcttgaggagtcaggtcccaagctgtcttcacattgccatcct
gcctggcagagctcagcgcagcgggagagagtctcaaagctgcagcaaga
ctgcggggcccaggaataccagctgacccagattctccctgtgtcctcca
aatgcccttcctctctggtgacagggtcatgcctccgaatagactggccc
tgagtaaactctgccttagccaccctcctctccttccccaggctccaaag
aaaaccagtttgaatatttaaacttctcctgtgtgtctaataaaaagttc
tgcactatttaatgccccagctatccattactgtctggagctgccctctc
ctcttcggtctccccctcccttcctctttgcccaaaccatggcgcacagc
aaagccattttgttcaaactgatcccgccgcccggctgcgcttggctgtg
tcttgaaaggacatgccgccccacaggggaagtgggaatgaattaagaag
cctatgcaaatacttgcttaattctgcagagaaacacccagctttgggag
aacgctcattacttctttaactgtgatttaccggccaattaatccaagcc
taccttctctttgcagaaggattgaatgcaagcctgcctggtgccagtgc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96648293_96648985
seq2: B6Ng01-178C04.b_41_734

seq1  GAATTCAGCTTAATGTGGGGGTGGGGGGAATAGCAGCATTTGATTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTAATGTGGGGGTGGGGGGAATAGCAGCATTTGATTTGGTC  50

seq1  ATTAGAAATGCAATTATATTTGGGATACCAGTTCTCATCTCTAATGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATGCAATTATATTTGGGATACCAGTTCTCATCTCTAATGGAGA  100

seq1  ACTCGATAGATTAGCTGGAGCTGAGCTGCACATTAAATCTCTAACCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGATAGATTAGCTGGAGCTGAGCTGCACATTAAATCTCTAACCAGGA  150

seq1  GACAAAGGCTGAAGTTTCCTATTTAACAAATCAAAGCTGGCCTGGCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGCTGAAGTTTCCTATTTAACAAATCAAAGCTGGCCTGGCCACC  200

seq1  AGGTCCCCCAGCATCCCTCAGCTCTGACCTGTTACCCCAGAATTCGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCCCAGCATCCCTCAGCTCTGACCTGTTACCCCAGAATTCGTTAG  250

seq1  ACCAGGGGCTGGGCTGCCCTTCCCCCAGAGGCTCCTCCCAGCCATTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGCTGGGCTGCCCTTCCCCCAGAGGCTCCTCCCAGCCATTTTGG  300

seq1  TTACCTTCCTACCCCATTTTTAATGCTTTCCCATCTTGGTTGCTGCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCCTACCCCATTTTTAATGCTTTCCCATCTTGGTTGCTGCACCT  350

seq1  GGTTCCCCTCTTTCCTTCTCTCTGCCTTCTCCTCACATGGCTTAAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCCTCTTTCCTTCTCTCTGCCTTCTCCTCACATGGCTTAAAGGCA  400

seq1  TCCAGAACGGGTGGGTTGTCGCCTGGTTTTGGAGGCTTGACCCAAGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACGGGTGGGTTGTCGCCTGGTTTTGGAGGCTTGACCCAAGTATT  450

seq1  TTTTCAGGAAGAATCGGTCTCTTTTGACTAATTTTTATATAACATTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGAAGAATCGGTCTCTTTTGACTAATTTTTATATAACATTGTGA  500

seq1  AACTAACCCTCTTTTTCTTTTGTCTTAGTTTTTTGAACAGAAAAGTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCCTCTTTTTCTTTTGTCTTAGTTTTTTGAACAGAAAAGTTGTC  550

seq1  ACTGTTTCGGGGTTTTTTTGATTTTTGGTTTGTTTGTTTGTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCGGGGTTTTTTTGATTTTTGGTTTGTTTGTTTGTTTTTTTTTT  600

seq1  TAAGACAAGCTCTCACTCTGTAACCTAGGCTACATAGTCTAAACTGCGC-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAGACAAGCTCTCACTCTGTAACCTAGGCTACATAGTCTAAACTGCGCT  650

seq1  TTTTTTTTTTTTTTTTTTTTTTGGGTTTGCTGTTGTGTTTGTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTGGGTTTGCTGTTGTGTTTGTTT  694

seq1: chr11_96764165_96765317
seq2: B6Ng01-178C04.g_66_1216 (reverse)

seq1  GGCACTGGCACCAGAGCAGGGCTCTGCATTCAAATCCTCTGCCAGGAGAG  50
      |||||||||||||| ||| |||| |||||||||  | ||||| | |||| 
seq2  GGCACTGGCACCAG-GCA-GGCT-TGCATTCAATCCTTCTGCAAAGAGA-  46

seq1  AGTTAAGGGCTTGGGTTTAATTTGCCCGTTAATCACAGTTAAAAGAAGTA  100
      || ||  ||||| || |||||| ||| || |||||||||| |||||||||
seq2  AGGTA--GGCTT-GGATTAATTGGCCGGTAAATCACAGTT-AAAGAAGTA  92

seq1  ATGAGCGTCTCCCCAAAGCCTGGGTGTTTCTCTGCAG-ATTAAGCAGTAA  149
      ||||||||   ||||||| |||||||||||||||||| ||||||||   |
seq2  ATGAGCGTTCTCCCAAAG-CTGGGTGTTTCTCTGCAGAATTAAGCAAGTA  141

seq1  TTTGCATA-GCTCCTTTATTCATTCCCACCTTCCCCTGTGGGGCGGCATG  198
      |||||||| ||| ||| ||||||||||| |||||||||||||||||||||
seq2  TTTGCATAGGCTTCTTAATTCATTCCCA-CTTCCCCTGTGGGGCGGCATG  190

seq1  TCCTTTC-AGACACAGCCAAGCGCAGCC-GGCGGCGGGATCAGTTTGA--  244
      ||||||| |||||||||||||||||||| |||||||||||||||||||  
seq2  TCCTTTCAAGACACAGCCAAGCGCAGCCGGGCGGCGGGATCAGTTTGAAC  240

seq1  CAAATGGCTTTGCTGTGCGCCATGGTTTGGGC-AAGAGGAAGGGAGGGGG  293
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAATGGCTTTGCTGTGCGCCATGGTTTGGGCAAAGAGGAAGGGAGGGGG  290

seq1  AGACCG-AGAGGAGAGGGCAGCTCCAGACAGTAATGGATAGCTGGGGCAT  342
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGAAGAGGAGAGGGCAGCTCCAGACAGTAATGGATAGCTGGGGCAT  340

seq1  TAAATAGTGCAGAACTTTTTATTAGACACACAGGAGAAGTTTAAATATTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTGCAGAACTTTTTATTAGACACACAGGAGAAGTTTAAATATTC  390

seq1  AAACTGGTTTTCTTTGGAGCCTGGGGAAGGAGAGGAGGGTGGCTAAGGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTTTTCTTTGGAGCCTGGGGAAGGAGAGGAGGGTGGCTAAGGCA  440

seq1  GAGTTTACTCAGGGCCAGTCTATTCGGAGGCATGACCCTGTCACCAGAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACTCAGGGCCAGTCTATTCGGAGGCATGACCCTGTCACCAGAGA  490

seq1  GGAAGGGCATTTGGAGGACACAGGGAGAATCTGGGTCAGCTGGTATTCCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCATTTGGAGGACACAGGGAGAATCTGGGTCAGCTGGTATTCCT  540

seq1  GGGCCCCGCAGTCTTGCTGCAGCTTTGAGACTCTCTCCCGCTGCGCTGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCGCAGTCTTGCTGCAGCTTTGAGACTCTCTCCCGCTGCGCTGAG  590

seq1  CTCTGCCAGGCAGGATGGCAATGTGAAGACAGCTTGGGACCTGACTCCTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAGGCAGGATGGCAATGTGAAGACAGCTTGGGACCTGACTCCTC  640

seq1  AAGAGTGCATGCAGGGCAGTCTGTCCAAAGCCCAGTGTGTGGGTGGCGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGCATGCAGGGCAGTCTGTCCAAAGCCCAGTGTGTGGGTGGCGCT  690

seq1  CACGAGGCCCAGCTGTGCTAGCAAAAAACTGGGCCTACAATGAAATGGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGCCCAGCTGTGCTAGCAAAAAACTGGGCCTACAATGAAATGGCA  740

seq1  TTGCCAGGAGAACAAGCAATGGCCCTTTGCTCTCCTCAGATAGGGAAAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGAGAACAAGCAATGGCCCTTTGCTCTCCTCAGATAGGGAAAGG  790

seq1  AGTGGAGAGACAGGCCCTGAAGGTTCACAGGGGACACGTCCTCCTTCCCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGAGACAGGCCCTGAAGGTTCACAGGGGACACGTCCTCCTTCCCC  840

seq1  TCCTGGTGATGGGAGTTTAGTCTAGTTCATTTGTATTTGTTTGGTTTGGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGATGGGAGTTTAGTCTAGTTCATTTGTATTTGTTTGGTTTGGT  890

seq1  GGTTTGTGTGTTTTCTGAGGGCTGTTGGGGGTGCTGACACAGGATTTCAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGTGTTTTCTGAGGGCTGTTGGGGGTGCTGACACAGGATTTCAC  940

seq1  TACATGGTATAGTATATTTCACTATACTAGACTGTATAGTCTAAGCTGGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTATAGTATATTTCACTATACTAGACTGTATAGTCTAAGCTGGC  990

seq1  CAATGAGTCCTTTTATTTACTTTTGCTGGTGCTGGGGATGGAACGCATTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGTCCTTTTATTTACTTTTGCTGGTGCTGGGGATGGAACGCATTA  1040

seq1  GGCAAGTAAGAACTCCATCCATCACAGACCTACATCCCTCACCCACTATC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTAAGAACTCCATCCATCACAGACCTACATCCCTCACCCACTATC  1090

seq1  AGCCCTTCCCGTCTTCTTGTTGTTGTTGTTGTTTGACAAGGTCCTGGCTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCCCGTCTTCTTGTTGTTGTTGTTGTTTGACAAGGTCCTGGCTG  1140

seq1  GCCTGGAATTC  1153
      |||||||||||
seq2  GCCTGGAATTC  1151