BAC Information

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BAC

Clone NameB6Ng01-178F09
Chromosome11 (Build37)
Map Location 47,734,884 - 47,893,410
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178F09.bB6Ng01-178F09.g
ACCGA005352GA005353
length1,176817
definitionB6Ng01-178F09.b B6Ng01-178F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,734,884 - 47,736,074)(47,892,595 - 47,893,410)
sequence
gaattcaatcactgggatacaggatctgcctcctagggcaaaagtgatcc
ctctgagcagaccagagtgctctcctcaagtggtctcctgaactgtttgt
aagaccaaaactgaatgatcagtcagactcctggccttaccaagatgtca
aaatatcagccacacttctgtcttctcttttcaataaaatctcaaaggcc
ttatttgccccttaaaataaatttggagacactgaaccccttcatttgtt
ctttccaaaacaacactaattaaatgtcctttctctaattcttggccatt
catttgtatattgaaaccagtactgcacttaatcgttgggaactctcaga
gacaaggtgctggcccacccccacccaccaagctctagtattaattactg
ctggaattaaacaaatcaatataaacttcatataagaaagacaacttttc
atgtctcaatctgaatccttttagaataaagacacgtatccagcaaacac
ttgaattcttgtttacttaatatttaagaatccatcaaaaatgtacagac
aatgaaagatgactctgaccctgggacaattacattatataaactgcatt
gataagctgtcttctcatgaacaataactgccttaattatggcaaataag
caataaaatataaatattactaaagagataacctagaaaaaaatctaaat
cctcacatgatttccctccacaaatctgagaaaatatttttgtataacat
gatgaaatagtctgttttctcctggaaccatccggcaagagttgcaggag
gcaaacaagggacacacttagaccattttatcagactcttactgttcctt
tcattctttcaaaggcatctactacacagctgttgcctggcatgcccaag
tctatcctctcccacagacagaaacagaaaccatggatcaaagtaacaca
acttatcctgacattagaaagaaagtgagcctaagaggacacttggtaat
gcatgtggcttacagatgacttctatagacatggctaaaataccagatta
tatgtttatttagtcacagcagtctcagagatacaaatagaaacatggaa
attctatcatagaaccacttagtggtggtgtggcaatgactagaagttat
ctatttttctgaggtgaaacatcaaa

gaattcaccggacatactcttaaaccttcccaattatgggctcttcccta
agcctcagagtccattaatcatgtgactgagaaaagacttattatgacct
tcctttgtatcaatcttggatatctcttacgcgtgggaaagccgcctgca
gctggcgcagtgttttgggggattaaggtaaatcagacaagagagcagag
tgaaatgaacgcgttagagagggaattgggactttgtaaggaccgagcag
ccttcccttacgtccaacttaacttaggtggtctccattgtggtaagatt
gaggtgagaaagaaggatggagactttgcttgtcattggaacctgagtgg
ggaggaggttattggagacaggaacctgtttttatccatctggtttgttt
tcacgtttccagtatgagcatctcattgagaatgtgcaggttgcacattt
atttgcctaaaatcatgacatggtcacaggccaaacacagcatcggatga
tgcttatgtgagggtacctagaattactgactaaatttagagacagtatt
ttcacaccttgtgtgttaatggcagagaggttttttttcaagggtagata
tgaactttgtgtagttttgtatttgtatcacctaacactgagtatcttta
tctccttattttgaagtgactacattattctggtcaccatctagtaccac
caccaccaccttcaccaccaaacccagatactattgcatatgccagcaga
ttttgctgaaaggaccctgatatagctgtcttgtatgaggttatgccagt
gcctggcaaatacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47734884_47736074
seq2: B6Ng01-178F09.b_53_1228

seq1  GAATTCAATCACTGGGATACAGGATCTGCCTCCTAGGGCAAAAGTGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCACTGGGATACAGGATCTGCCTCCTAGGGCAAAAGTGATCC  50

seq1  CTCTGAGCAGACCAGAGTGCTCTCCTCAAGTGGTCTCCTGAACTGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCAGACCAGAGTGCTCTCCTCAAGTGGTCTCCTGAACTGTTTGT  100

seq1  AAGACCAAAACTGAATGATCAGTCAGACTCCTGGCCTTACCAAGATGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAAACTGAATGATCAGTCAGACTCCTGGCCTTACCAAGATGTCA  150

seq1  AAATATCAGCCACACTTCTGTCTTCTCTTTTCAATAAAATCTCAAAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAGCCACACTTCTGTCTTCTCTTTTCAATAAAATCTCAAAGGCC  200

seq1  TTATTTGCCCCTTAAAATAAATTTGGAGACACTGAACCCCTTCATTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCCCCTTAAAATAAATTTGGAGACACTGAACCCCTTCATTTGTT  250

seq1  CTTTCCAAAACAACACTAATTAAATGTCCTTTCTCTAATTCTTGGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAAACAACACTAATTAAATGTCCTTTCTCTAATTCTTGGCCATT  300

seq1  CATTTGTATATTGAAACCAGTACTGCACTTAATCGTTGGGAACTCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTATATTGAAACCAGTACTGCACTTAATCGTTGGGAACTCTCAGA  350

seq1  GACAAGGTGCTGGCCCACCCCCACCCACCAAGCTCTAGTATTAATTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGTGCTGGCCCACCCCCACCCACCAAGCTCTAGTATTAATTACTG  400

seq1  CTGGAATTAAACAAATCAATATAAACTTCATATAAGAAAGACAACTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTAAACAAATCAATATAAACTTCATATAAGAAAGACAACTTTTC  450

seq1  ATGTCTCAATCTGAATCCTTTTAGAATAAAGACACGTATCCAGCAAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCAATCTGAATCCTTTTAGAATAAAGACACGTATCCAGCAAACAC  500

seq1  TTGAATTCTTGTTTACTTAATATTTAAGAATCCATCAAAAATGTACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCTTGTTTACTTAATATTTAAGAATCCATCAAAAATGTACAGAC  550

seq1  AATGAAAGATGACTCTGACCCTGGGACAATTACATTATATAAACTGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGATGACTCTGACCCTGGGACAATTACATTATATAAACTGCATT  600

seq1  GATAAGCTGTCTTCTCATGAACAATAACTGCCTTAATTATGGCAAATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCTGTCTTCTCATGAACAATAACTGCCTTAATTATGGCAAATAAG  650

seq1  CAATAAAATATAAATATTACTAAAGAGATAACCTAGAAAAAAATCTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATATAAATATTACTAAAGAGATAACCTAGAAAAAAATCTAAAT  700

seq1  CCTCACATGATTTCCCTCCACAAATCTGAGAAAATATTTTTGTATAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATGATTTCCCTCCACAAATCTGAGAAAATATTTTTGTATAACAT  750

seq1  GATGAAATAGTCTGTTTTCTCCTGGAACCATCCGGCAAGAGTTGCAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATAGTCTGTTTTCTCCTGGAACCATCCGGCAAGAGTTGCAGGAG  800

seq1  GCAAACAAGGGACACACTTAGACCATTTTATCAGACTCTTACTGTTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGGGACACACTTAGACCATTTTATCAGACTCTTACTGTTCCTT  850

seq1  TCATTCTTTCAAAGGCATCTACTACACAGCTGTTGCCTGGCATGCCCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTCAAAGGCATCTACTACACAGCTGTTGCCTGGCATGCCCAAG  900

seq1  TCTATCCTCTCCCACAGACAGAAACAGAAACCATGGATCAAAGTAACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTCTCCCACAGACAGAAACAGAAACCATGGATCAAAGTAACACA  950

seq1  ACTTATCCTGACATTAGAAAAGAAAGTGAGCCTAAAGAGGACAACTTGGT  1000
      ||||||||||||||||| ||||||||||||||| |||||||| |||||||
seq2  ACTTATCCTGACATTAG-AAAGAAAGTGAGCCT-AAGAGGAC-ACTTGGT  997

seq1  AATGCATGTGGCTTACAGATGAACTTCTATAGAACATGGCTAAAAATAAC  1050
      ||||||||||||||||||||| |||||||||| ||||||||||||   ||
seq2  AATGCATGTGGCTTACAGATG-ACTTCTATAG-ACATGGCTAAAA--TAC  1043

seq1  CAGAATATATG-TTATTTAGTCACAGCAGTCTCAAGAGATTACAAATAGA  1099
      |||| |||||| ||||||||||||||||||||| ||||| ||||||||||
seq2  CAGATTATATGTTTATTTAGTCACAGCAGTCTC-AGAGA-TACAAATAGA  1091

seq1  ACACATGAAAATTCTATCATAGAAACCACTTAGTG--TGTGTGGCATTGA  1147
      | ||||| |||||||||||||| ||||||||||||   |||||||| |||
seq2  A-ACATGGAAATTCTATCATAG-AACCACTTAGTGGTGGTGTGGCAATGA  1139

seq1  CTAGAAGGTAAATCTATTTTTCTGAGGTTGAAAAAACCATCAAA  1191
      ||||||| |  |||||||||||||||| |||||    |||||||
seq2  CTAGAAGTT--ATCTATTTTTCTGAGG-TGAAA----CATCAAA  1176


seq1: chr11_47892595_47893410
seq2: B6Ng01-178F09.g_68_884 (reverse)

seq1  TTCTGTATTTGCCAGGCACTGGCATAACCTCATACAAGACAGCTATATCA  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTTGCCAGGCACTGGCATAACCTCATACAAGACAGCTATATCA  50

seq1  GGGTCCTTTCAGCAAAATCTTGCTGGCATATGCAATAGTATCTGGGTTTG  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGTCCTTTCAGCAAAATC-TGCTGGCATATGCAATAGTATCTGGGTTTG  99

seq1  GTGGTGAAGGTGGTGGTGGTGGTACTAGATGGTGACCAGAATAATGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAAGGTGGTGGTGGTGGTACTAGATGGTGACCAGAATAATGTAGT  149

seq1  CACTTC-AAATAAGGAGAT-AAGATACTCAGTGTTAGGTGATACAAATAC  198
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  CACTTCAAAATAAGGAGATAAAGATACTCAGTGTTAGGTGATACAAATAC  199

seq1  AAAACTACACAAAGTTCATATCTACCCTTGAAAAAAAACCTCTCTGCCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACACAAAGTTCATATCTACCCTTGAAAAAAAACCTCTCTGCCAT  249

seq1  TAACACACAAGGTGTGAAAATACTGTCTCTAAATTTAGTCAGTAATTCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACACAAGGTGTGAAAATACTGTCTCTAAATTTAGTCAGTAATTCTA  299

seq1  GGTACCCTCACATAAGCATCATCCGATGCTGTGTTTGGCCTGTGACCATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCTCACATAAGCATCATCCGATGCTGTGTTTGGCCTGTGACCATG  349

seq1  TCATGATTTTAGGCAAATAAATGTGCAACCTGCACATTCTCAATGAGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTTTAGGCAAATAAATGTGCAACCTGCACATTCTCAATGAGATG  399

seq1  CTCATACTGGAAACGTGAAAACAAACCAGATGGATAAAAACAGGTTCCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACTGGAAACGTGAAAACAAACCAGATGGATAAAAACAGGTTCCTG  449

seq1  TCTCCAATAACCTCCTCCCCACTCAGGTTCCAATGACAAGCAAAGTCTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATAACCTCCTCCCCACTCAGGTTCCAATGACAAGCAAAGTCTCC  499

seq1  ATCCTTCTTTCTCACCTCAATCTTACCACAATGGAGACCACCTAAGTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTTTCTCACCTCAATCTTACCACAATGGAGACCACCTAAGTTAA  549

seq1  GTTGGACGTAAGGGAAGGCTGCTCGGTCCTTACAAAGTCCCAATTCCCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACGTAAGGGAAGGCTGCTCGGTCCTTACAAAGTCCCAATTCCCTC  599

seq1  TCTAACGCGTTCATTTCACTCTGCTCTCTTGTCTGATTTACCTTAATCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACGCGTTCATTTCACTCTGCTCTCTTGTCTGATTTACCTTAATCCC  649

seq1  CCAAAACACTGCGCCAGCTGCAGGCGGCTTTCCCACGCGTAAGAGATATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACACTGCGCCAGCTGCAGGCGGCTTTCCCACGCGTAAGAGATATC  699

seq1  CAAGATTGATACAAAGGAAGGTCATAATAAGTCTTTTCTCAGTCACATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGATACAAAGGAAGGTCATAATAAGTCTTTTCTCAGTCACATGA  749

seq1  TTAATGGACTCTGAGGCTTAGGGAAGAGCCCATAATTGGGAAGGTTTAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGACTCTGAGGCTTAGGGAAGAGCCCATAATTGGGAAGGTTTAAG  799

seq1  AGTATGTCCGGTGAATTC  816
      ||||||||||||||||||
seq2  AGTATGTCCGGTGAATTC  817


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