BAC Information

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BAC

Clone NameB6Ng01-178L15
Chromosome11 (Build37)
Map Location 58,729,031 - 58,825,741
singlet/doubletdoublet
Overlap geneButr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
Upstream geneLOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39
Downstream geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178L15.bB6Ng01-178L15.g
ACCGA005633GA005634
length777782
definitionB6Ng01-178L15.b B6Ng01-178L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,729,031 - 58,729,807)(58,824,964 - 58,825,741)
sequence
gaattcatttttaactggtatattaagattatacataactatgggatagc
cctggagtgataatgtacaggtgtgtaatatctaaatcaggtgggacagc
tgcccactgtgtgttctaggaacctttcatgaatcctctagaagagcagc
aagtactctgagccactggcccatctctccagccctgtcctactgttcct
gtctaatcttgtacagaccctctgtgatcagtacaggtgctctgtgatca
atatagatgctctgtagtcagtacagaccctctgtgatcaggacagatcc
tctgtgatcaggacagatcctctgtgatcaggacagatcccctgtgatca
gtatagatcctctgtatcagtacagatctcctgtgatcagtacagatgct
ctgtgatcaatacagatgctctgtagtcagtacagatcctctgtgttagc
agatcaccacttcttgctatttaacacttacctcagcatccatcgatcaa
cccctttggtcccaaactctgttccacagcattctactttcaccttctct
gagatcaacatctcagctgccatgtatgagttggctagtgctgtgctcat
ttctctgtgcctggctcatcttacttaacataaaaaatctccagttctgt
gcatcttgttactaatgataggtttcgctctgttctggttgcagagtcct
gctgcctagcttttcaccctccagtgctgtgggtttatttaatttctctt
agctatcaagaatagggctggccaggt
gaattcaggaccacctctgtggtggacatggctgtagggtgggggggaaa
tccctggtcattgccctgatgagaacaataaatcaagtcccaaaccctcc
tctctgctcttttcttgcttgttcacccagaagctcagggtcccctcttc
ttgtagccatctgctagacctactctcatttcttcaaggttacgtctcag
gccacataggcctctagagtggttgattacctgtgtgccctgatgaagta
catgcaggtcccaggctaccttgaggttcatggtcagtgtctgaggactt
tactggtgtgaacagacaccattgccaaggtaacatttaattggagccga
cttgcaggttcagagtttcagtctattatcatcaaggagggattatcaca
gcatccaggcaggcatggcgcaaggaggagctgagagttctccatcttcc
tctgaagggtgctagcagaatactggcttccaggcagctaggatgagggt
cttaaaagcccatacccacagtgacacacctactctgacaaggccacacc
ttctaatagtgccactccatgggtggaaaatatacaaaccttaacaggta
gattaggggcaggatttgaactgatccttgaccgactatagagctgctcc
ttggggactcacagtttaagcagggcagccatcacagtcacttttggcct
actgggggctgagcaggccttcctaatccctgggatacctgaggccattg
taagatgaaatggggagtcaggagtgagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58729031_58729807
seq2: B6Ng01-178L15.b_48_824

seq1  GAATTCATTTTTAACTGGTATATTAAGATTATACATAACTATGGGATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTAACTGGTATATTAAGATTATACATAACTATGGGATAGC  50

seq1  CCTGGAGTGATAATGTACAGGTGTGTAATATCTAAATCAGGTGGGACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTGATAATGTACAGGTGTGTAATATCTAAATCAGGTGGGACAGC  100

seq1  TGCCCACTGTGTGTTCTAGGAACCTTTCATGAATCCTCTAGAAGAGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTGTGTGTTCTAGGAACCTTTCATGAATCCTCTAGAAGAGCAGC  150

seq1  AAGTACTCTGAGCCACTGGCCCATCTCTCCAGCCCTGTCCTACTGTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCTGAGCCACTGGCCCATCTCTCCAGCCCTGTCCTACTGTTCCT  200

seq1  GTCTAATCTTGTACAGACCCTCTGTGATCAGTACAGGTGCTCTGTGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATCTTGTACAGACCCTCTGTGATCAGTACAGGTGCTCTGTGATCA  250

seq1  ATATAGATGCTCTGTAGTCAGTACAGACCCTCTGTGATCAGGACAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATGCTCTGTAGTCAGTACAGACCCTCTGTGATCAGGACAGATCC  300

seq1  TCTGTGATCAGGACAGATCCTCTGTGATCAGGACAGATCCCCTGTGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCAGGACAGATCCTCTGTGATCAGGACAGATCCCCTGTGATCA  350

seq1  GTATAGATCCTCTGTATCAGTACAGATCTCCTGTGATCAGTACAGATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATCCTCTGTATCAGTACAGATCTCCTGTGATCAGTACAGATGCT  400

seq1  CTGTGATCAATACAGATGCTCTGTAGTCAGTACAGATCCTCTGTGTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCAATACAGATGCTCTGTAGTCAGTACAGATCCTCTGTGTTAGC  450

seq1  AGATCACCACTTCTTGCTATTTAACACTTACCTCAGCATCCATCGATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACCACTTCTTGCTATTTAACACTTACCTCAGCATCCATCGATCAA  500

seq1  CCCCTTTGGTCCCAAACTCTGTTCCACAGCATTCTACTTTCACCTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGGTCCCAAACTCTGTTCCACAGCATTCTACTTTCACCTTCTCT  550

seq1  GAGATCAACATCTCAGCTGCCATGTATGAGTTGGCTAGTGCTGTGCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAACATCTCAGCTGCCATGTATGAGTTGGCTAGTGCTGTGCTCAT  600

seq1  TTCTCTGTGCCTGGCTCATCTTACTTAACATAAAAAATCTCCAGTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGCCTGGCTCATCTTACTTAACATAAAAAATCTCCAGTTCTGT  650

seq1  GCATCTTGTTACTAATGATAGGTTTCGCTCTGTTCTGGTTGCAGAGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGTTACTAATGATAGGTTTCGCTCTGTTCTGGTTGCAGAGTCCT  700

seq1  GCTGCCTAGCTTTTCACCCTCCAGTGCTGTGGGTTTATTTAATTTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTAGCTTTTCACCCTCCAGTGCTGTGGGTTTATTTAATTTCTCTT  750

seq1  AGCTATCAAGAATAGGGCTGGCCAGGT  777
      |||||||||||||||||||||||||||
seq2  AGCTATCAAGAATAGGGCTGGCCAGGT  777

seq1: chr11_58824964_58825741
seq2: B6Ng01-178L15.g_67_848 (reverse)

seq1  CACTCTCACTCCTGACTCCCCA-TTCATCCTACAATGGCCTCAGGTAT-C  48
      |||||||||||||||||||||| |||||| |||||||||||||||||| |
seq2  CACTCTCACTCCTGACTCCCCATTTCATCTTACAATGGCCTCAGGTATCC  50

seq1  CAGGGATTAGGAAGGCCTGCTCAG-CCCCAGTAGGCCAAAAGTGACTGTG  97
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGGGATTAGGAAGGCCTGCTCAGCCCCCAGTAGGCCAAAAGTGACTGTG  100

seq1  ATGGCTGCCCTGCTTAAACTGTGAGT-CCCAAGGAGCAGCTCTATAGTCG  146
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGGCTGCCCTGCTTAAACTGTGAGTCCCCAAGGAGCAGCTCTATAGTCG  150

seq1  GTCAAGGATCAGTTCAAATCCTGCCCCTAATCTACCTGTTAAGGTTTGTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGATCAGTTCAAATCCTGCCCCTAATCTACCTGTTAAGGTTTGTA  200

seq1  TATTTTCCACCCATGGAGTGGCACTATTAGAAGGTGTGGCCTTGTCAGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCACCCATGGAGTGGCACTATTAGAAGGTGTGGCCTTGTCAGAG  250

seq1  TAGGTGTGTCACTGTGGGTATGGGCTTTTAAGACCCTCATCCTAGCTGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGTCACTGTGGGTATGGGCTTTTAAGACCCTCATCCTAGCTGCC  300

seq1  TGGAAGCCAGTATTCTGCTAGCACCCTTCAGAGGAAGATGGAGAACTCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGTATTCTGCTAGCACCCTTCAGAGGAAGATGGAGAACTCTC  350

seq1  AGCTCCTCCTTGCGCCATGCCTGCCTGGATGCTGTGATAATCCCTCCTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCTTGCGCCATGCCTGCCTGGATGCTGTGATAATCCCTCCTTG  400

seq1  ATGATAATAGACTGAAACTCTGAACCTGCAAGTCGGCTCCAATTAAATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATAGACTGAAACTCTGAACCTGCAAGTCGGCTCCAATTAAATGT  450

seq1  TACCTTGGCAATGGTGTCTGTTCACACCAGTAAAGTCCTCAGACACTGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGGCAATGGTGTCTGTTCACACCAGTAAAGTCCTCAGACACTGAC  500

seq1  CATGAACCTCAAGGTAGCCTGGGACCTGCATGTACTTCATCAGGGCACAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCTCAAGGTAGCCTGGGACCTGCATGTACTTCATCAGGGCACAC  550

seq1  AGGTAATCAACCACTCTAGAGGCCTATGTGGCCTGAGACGTAACCTTGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATCAACCACTCTAGAGGCCTATGTGGCCTGAGACGTAACCTTGAA  600

seq1  GAAATGAGAGTAGGTCTAGCAGATGGCTACAAGAAGAGGGGACCCTGAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGAGTAGGTCTAGCAGATGGCTACAAGAAGAGGGGACCCTGAGC  650

seq1  TTCTGGGTGAACAAGCAAGAAAAGAGCAGAGAGGAGGGTTTGGGACTTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTGAACAAGCAAGAAAAGAGCAGAGAGGAGGGTTTGGGACTTGA  700

seq1  TTTATTGTTCTCATCAGGGCAATGACCAGGGATTTCCCCCCCACCCTACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTTCTCATCAGGGCAATGACCAGGGATTTCCCCCCCACCCTACA  750

seq1  GCCATGTCCACCACAGAGGTGGTCCTGAATTC  778
      ||||||||||||||||||||||||||||||||
seq2  GCCATGTCCACCACAGAGGTGGTCCTGAATTC  782