BAC Information

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BAC

Clone NameB6Ng01-178O03
Chromosome11 (Build37)
Map Location 99,199,773 - 99,342,721
singlet/doubletdoublet
Overlap geneKrt27, Krt10, A830036E02Rik, Krt20, Krt23
Upstream genePpp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26
Downstream geneKrt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178O03.bB6Ng01-178O03.g
ACCGA005749GA005750
length1,172409
definitionB6Ng01-178O03.b B6Ng01-178O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,341,531 - 99,342,721)(99,199,773 - 99,200,186)
sequence
gaattctccacctaaccagagattaaatagaaacatcaggaatagttcaa
agccaggcagctcctgtctgatccccagtgtgtaaaccatcaaagctagg
ggatgcagtggcgttgtcaagagctccctgacacaatggcttcttgccaa
agacccagcactgaccccaagtcccaaccccgtaagtctcgccccagcat
cacccacaatgccttgcggagaggtcagagtaagttaactctgcgcaagc
cctgctgccgacacccctagtagactagtgagtgggctatcgttccgtct
ttcagaaaaccgctttggaaaacatgctgacagagacccgggctcgatac
tcctgccgtctccaggacatgcagcagatcatctcccactacgaagaaga
gctgattcagctccgccaagacctggagcgtcagaacaatgaacacaagg
tgctgctgggcatcaaaacccacctggagaaggaaatcgccacctaccgc
cggctcctggagggagacactgaagggtgaggctggagcagctagaacgt
gctggacgtgacactcctgtgcatggatggatgtgtccccagggtctcag
ccatggtgaatgtagagagaaagaaagattaattttctctggaagattcc
tgtatcaggcttttcattaagtctgagctgaaagggtggttctccctgga
tgtgaaggtttgctctcagagcccttagtaatggttcaaagcagagatgg
gggaatgaagaacaggtatgtctgttgtgtttctccagtagagtgcactc
aagctgagttcgaaaataaaaaccaaaggcaggggaaaggtttgtagact
aacagcagagatagattcactaagagagtcaagattatcaaactgatatt
tctgaccattcctaaaaccatagctagccatcacaaagtccatgtgtgtc
ctctggtccaaaaacaggagcgtcagagggtttttcaaactacatgaata
aatgtggtggaacaaactacacccagtctgaggagctcagaaaaacccag
acatgagacgcaactccagatagatatggtgctgtagaagccgaaagagg
aacagagaatgagacttgggagaaattctcctgaatccgaacttctgaaa
ggtgccttttcggatccagttg
ttgagctgatgtattttgccatgtgcatgttcatgggtgtttgcatgtat
gtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtggaggccagaggacaa
cttcaggtatggttctgtcatctatcctgttcagtttttgagatgggggt
ctcattggtcaggagcttgtgaggcgggcgatcctggagccctaaggatc
agcacgtctctgcctcccagtgctgggggggatgacaagcattcgcccaa
gctcatggctttttcacaaggttcctgggggtggggtgggggtcctcaca
cttggatgggaaatgctttacttactgagaggtctcgacagaccctggca
ctggtttgtaataagtcgaaagcattcgggcgtggtggcgcacgcctttt
aatcccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99341531_99342721
seq2: B6Ng01-178O03.b_42_1213 (reverse)

seq1  CAACTGGATCCCGAAAAGAGGGCCACCTTCCAGAAGTTCTGATATCAGGA  50
      ||||||||| |||||||    | |||||| ||||||||| ||| ||||||
seq2  CAACTGGAT-CCGAAAA----GGCACCTTTCAGAAGTTCGGAT-TCAGGA  44

seq1  GAA-TTCTCCCAAGTCTCCATGTCTTCCTGTTCCTCTCTCCGGCTTCCTA  99
      ||| ||||||||||||| ||| |||  |||||||||| | |||||| |||
seq2  GAATTTCTCCCAAGTCT-CAT-TCT--CTGTTCCTCT-TTCGGCTT-CTA  88

seq1  CAGCCACCAATATCCTTATCTGGAGTTTGCGTCTCATGTCTGGG-TTTTC  148
      ||| |||| |||||  ||||||||| |||||||||||||||||| |||||
seq2  CAG-CACC-ATATC--TATCTGGAG-TTGCGTCTCATGTCTGGGTTTTTC  133

seq1  TGAGCTCCTCAGACTGGGTGTAGTTTGTTCCAACCACATTTTATTCATGT  198
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  TGAGCTCCTCAGACTGGGTGTAGTTTGTTCC-ACCACA-TTTATTCATGT  181

seq1  AGTTTGAAAAAACCCTCTGACGCTCCCTGTTTTTGGACCAGAGGACACAC  248
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTTTG-AAAAACCCTCTGACGCT-CCTGTTTTTGGACCAGAGGACACAC  229

seq1  ATGGACTTTGTGATGGCTAGCTATGGTTTTAGGAATGGTCAGAAATATCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTTGTGATGGCTAGCTATGGTTTTAGGAATGGTCAGAAATATCA  279

seq1  GTTTGATAATCTTGACTCTCTTAGTGAATCTATCTCTGCTGTTAGTCTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATAATCTTGACTCTCTTAGTGAATCTATCTCTGCTGTTAGTCTAC  329

seq1  AAACCTTTCCCCTGCCTTTGGTTTTTATTTTCGAACTCAGCTTGAGTGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTCCCCTGCCTTTGGTTTTTATTTTCGAACTCAGCTTGAGTGCA  379

seq1  CTCTACTGGAGAAACACAACAGACATACCTGTTCTTCATTCCCCCATCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGGAGAAACACAACAGACATACCTGTTCTTCATTCCCCCATCTC  429

seq1  TGCTTTGAACCATTACTAAGGGCTCTGAGAGCAAACCTTCACATCCAGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGAACCATTACTAAGGGCTCTGAGAGCAAACCTTCACATCCAGGG  479

seq1  AGAACCACCCTTTCAGCTCAGACTTAATGAAAAGCCTGATACAGGAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACCCTTTCAGCTCAGACTTAATGAAAAGCCTGATACAGGAATCT  529

seq1  TCCAGAGAAAATTAATCTTTCTTTCTCTCTACATTCACCATGGCTGAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAAAATTAATCTTTCTTTCTCTCTACATTCACCATGGCTGAGAC  579

seq1  CCTGGGGACACATCCATCCATGCACAGGAGTGTCACGTCCAGCACGTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGACACATCCATCCATGCACAGGAGTGTCACGTCCAGCACGTTCT  629

seq1  AGCTGCTCCAGCCTCACCCTTCAGTGTCTCCCTCCAGGAGCCGGCGGTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCCAGCCTCACCCTTCAGTGTCTCCCTCCAGGAGCCGGCGGTAG  679

seq1  GTGGCGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACCTTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACCTTGTG  729

seq1  TTCATTGTTCTGACGCTCCAGGTCTTGGCGGAGCTGAATCAGCTCTTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTTCTGACGCTCCAGGTCTTGGCGGAGCTGAATCAGCTCTTCTT  779

seq1  CGTAGTGGGAGATGATCTGCTGCATGTCCTGGAGACGGCAGGAGTATCGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTGGGAGATGATCTGCTGCATGTCCTGGAGACGGCAGGAGTATCGA  829

seq1  GCCCGGGTCTCTGTCAGCATGTTTTCCAAAGCGGTTTTCTGAAAGACGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGTCTCTGTCAGCATGTTTTCCAAAGCGGTTTTCTGAAAGACGGA  879

seq1  ACGATAGCCCACTCACTAGTCTACTAGGGGTGTCGGCAGCAGGGCTTGCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATAGCCCACTCACTAGTCTACTAGGGGTGTCGGCAGCAGGGCTTGCG  929

seq1  CAGAGTTAACTTACTCTGACCTCTCCGCAAGGCATTGTGGGTGATGCTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTAACTTACTCTGACCTCTCCGCAAGGCATTGTGGGTGATGCTGG  979

seq1  GGCGAGACTTACGGGGTTGGGACTTGGGGTCAGTGCTGGGTCTTTGGCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGACTTACGGGGTTGGGACTTGGGGTCAGTGCTGGGTCTTTGGCAA  1029

seq1  GAAGCCATTGTGTCAGGGAGCTCTTGACAACGCCACTGCATCCCCTAGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATTGTGTCAGGGAGCTCTTGACAACGCCACTGCATCCCCTAGCT  1079

seq1  TTGATGGTTTACACACTGGGGATCAGACAGGAGCTGCCTGGCTTTGAACT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTTTACACACTGGGGATCAGACAGGAGCTGCCTGGCTTTGAACT  1129

seq1  ATTCCTGATGTTTCTATTTAATCTCTGGTTAGGTGGAGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGATGTTTCTATTTAATCTCTGGTTAGGTGGAGAATTC  1172

seq1: chr11_99199773_99200186
seq2: B6Ng01-178O03.g_65_479

seq1  GAATTCTTGAGCTGATGTATTTTGCCATGTGCATGTTCATGGGTGTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGCTGATGTATTTTGCCATGTGCATGTTCATGGGTGTTTGC  50

seq1  ATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGGAGGCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGGAGGCCAGA  100

seq1  GGACAACTTCAGGTATGGTTCTGTCATCTATCCTGTTCAGTTTTTGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTTCAGGTATGGTTCTGTCATCTATCCTGTTCAGTTTTTGAGAT  150

seq1  GGGGGTCTCATTGGTCAGGAGCTTGTGAGGCGGGCGATCCTGGAGCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCTCATTGGTCAGGAGCTTGTGAGGCGGGCGATCCTGGAGCCCTA  200

seq1  AGGATCAGCACGTCTCTGCCTCCCAGTGCTGGGGGGGATGACAAGCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGCACGTCTCTGCCTCCCAGTGCTGGGGGGGATGACAAGCATTC  250

seq1  GCCCAAGCTCTTGGCTTTTTCACAAGGTTCCTGGGGGTGGGGTGGGGGTC  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCTCATGGCTTTTTCACAAGGTTCCTGGGGGTGGGGTGGGGGTC  300

seq1  CTCACACTTGGATGGGAAATGCTTTACTTACTGAGAGGTCTCGACAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCACACTTGGATGGGAAATGCTTTACTTACTGAGAGGTCTCGACAGACC  350

seq1  CTGGCACTGGTTTGTAATAAGTCGAAAGCAGTCGGGCGTGGTGGCGCACG  400
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGGCACTGGTTTGTAATAAGTCGAAAGCATTCGGGCGTGGTGGCGCACG  400

seq1  CC-TTTAATCCCAGC  414
      || ||||||||||||
seq2  CCTTTTAATCCCAGC  415