BAC Information

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BAC

Clone NameB6Ng01-179A16
Chromosome11 (Build37)
Map Location 57,831,614 - 57,983,593
singlet/doubletdoublet
Overlap geneLarp1, LOC676527, LOC667947, Cnot8, Gemin5
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605
Downstream geneMrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179A16.bB6Ng01-179A16.g
ACCGA005869GA005870
length906864
definitionB6Ng01-179A16.b B6Ng01-179A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,982,692 - 57,983,593)(57,831,614 - 57,832,804)
sequence
gaattcaacacagtctggtctacagagcaagtgccaggcttgacagagct
atatagtgagatcctgtctaaaaaaaaaaaaaaaaaaaaaaaaaagccaa
cgggatggggtgttatcgagatggtccagctgacaagctgaagtcagtca
gtctctaggccccatatcatggaaagagagcaccaactccttgacctctg
acctccatacacacacattgtgaaatatgagcacacacacacacactaaa
taaataataaagactaagagacgagctaatgcgtttgtgtgctcctggca
aaactagtgatcaatgtggagtctggtaaccctgaatttagtgcccttag
gctatgctagcataggtaagggctctctattaatgatagccattgcaagt
ttccatatgccacattcaggaagggctaacagcagtacagaagtacagtc
gaatctgaacaagttgcttgggtttgagttgtaagcagagttcaattctt
ttttccctccacaccactaactagttctcacagcataggcactccattaa
gcaggaggcgggatgtcaaacctctgctctttaatctttgaataccccag
tatcaggaatcagaattcccacccaactacagagtctcttcctgtccttt
ctgattcctgactcatttcatttatttttgacaggctctcatactatagc
ccaggctgccctagcctggagcacatggcaatcctcctgcctgagtgctg
agccagagctcagattcattcttttagtatttcagctaaatacactcttg
catctgtcttttaaacacctcccaaaaactgtgaaaagtacgccgctatg
taccattttaaaacaaacaaacaaacaaacaaacaaaaacttgccagggc
atggtg
gaattcaactgagttaacacctgtgctcaggtacagggaatttgcattgt
ctcagagaggctgctaagtgtcttcctgagaagacaggcctaaggaggtg
ggctttgtttcagtccagaacctagttgtcagctctattcgggcagttgt
gccctggtgttcagttttcctcctcctctttttaagagaatgggaattac
taaaattggaagaggctgcaaagatagactcctcctttgcagggtacttc
atttgcagaatttagatgggaggtgcttgcactcggggattgcagagggt
tccgtcttgagactgggttactttggtgtgagacaggatgagtgtaggac
aggagaggtctgtaagaggaggagactgccacctcctgggaacagagagt
gaggaagacactgggcacatttccagtcacctacttcagctcagtctcca
ctaacagacatttctaaagtctcctaaaattgtgtattcaaaccatggca
ctcaacctactagtaccagtaggtgaaggtgagtttagctgagagtgtgc
aagagtttcccaggagcctggcccagagactggggttttagttactctcc
aggccttggatttggccttttattttgcttaacaggatattgttgaagcc
attcttcctcatgacccagcatcttctatcacttttcctagaatttggac
ctgtgcatagaaaggaaggtaatagttgctgtcacatcttttaactggtt
ttcctcctgaccctgccctctgctggtttatcatagaggtgaacttaaga
accttgtaagagtctgggcgtggtggcgcacgctttttatcccagcactt
ggggggtggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57982692_57983593
seq2: B6Ng01-179A16.b_39_944 (reverse)

seq1  CACCATG-CCTGGCAAGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTAA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  CACCATGCCCTGGCAAGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTAAA  50

seq1  ATGCTACATAGCGGCGTACTTTTC-CAGTTTTTGGGAGGTGTTTTAAAGA  98
      ||| |||||||||||||||||||| ||||||||||||||||||| |||||
seq2  ATGGTACATAGCGGCGTACTTTTCACAGTTTTTGGGAGGTGTTTAAAAGA  100

seq1  CAGATGCAAGAGTGTATTTAGCTGAAATACTAAAAGAATGAATCTGAGCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAAGAGTGTATTTAGCTGAAATACTAAAAGAATGAATCTGAGCT  150

seq1  CTGGCTCAGCACTCAGGCAGGAGGATTGCCATGTGCTCCAGGCTA-GGCA  197
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGGCTCAGCACTCAGGCAGGAGGATTGCCATGTGCTCCAGGCTAGGGCA  200

seq1  GCCTGGGCTATAGTATGAGAGCCTGTC-AAAATAAATGAAATGAGTCAGG  246
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCCTGGGCTATAGTATGAGAGCCTGTCAAAAATAAATGAAATGAGTCAGG  250

seq1  AATCAGAAAGGACAGGAAGAGACTCTGTAGTTGGGTGGGAATTCTGATTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAAGGACAGGAAGAGACTCTGTAGTTGGGTGGGAATTCTGATTC  300

seq1  CTGATACTGGGGTATTCAAAGATTAAAGAGCAGAGGTTTGACATCCCGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACTGGGGTATTCAAAGATTAAAGAGCAGAGGTTTGACATCCCGCC  350

seq1  TCCTGCTTAATGGAGTGCCTATGCTGTGAGAACTAGTTAGTGGTGTGGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTAATGGAGTGCCTATGCTGTGAGAACTAGTTAGTGGTGTGGAG  400

seq1  GGAAAAAAGAATTGAACTCTGCTTACAACTCAAACCCAAGCAACTTGTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAGAATTGAACTCTGCTTACAACTCAAACCCAAGCAACTTGTTC  450

seq1  AGATTCGACTGTACTTCTGTACTGCTGTTAGCCCTTCCTGAATGTGGCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCGACTGTACTTCTGTACTGCTGTTAGCCCTTCCTGAATGTGGCAT  500

seq1  ATGGAAACTTGCAATGGCTATCATTAATAGAGAGCCCTTACCTATGCTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACTTGCAATGGCTATCATTAATAGAGAGCCCTTACCTATGCTAG  550

seq1  CATAGCCTAAGGGCACTAAATTCAGGGTTACCAGACTCCACATTGATCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTAAGGGCACTAAATTCAGGGTTACCAGACTCCACATTGATCAC  600

seq1  TAGTTTTGCCAGGAGCACACAAACGCATTAGCTCGTCTCTTAGTCTTTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGCCAGGAGCACACAAACGCATTAGCTCGTCTCTTAGTCTTTAT  650

seq1  TATTTATTTAGTGTGTGTGTGTGTGCTCATATTTCACAATGTGTGTGTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTAGTGTGTGTGTGTGTGCTCATATTTCACAATGTGTGTGTAT  700

seq1  GGAGGTCAGAGGTCAAGGAGTTGGTGCTCTCTTTCCATGATATGGGGCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAGAGGTCAAGGAGTTGGTGCTCTCTTTCCATGATATGGGGCCT  750

seq1  AGAGACTGACTGACTTCAGCTTGTCAGCTGGACCATCTCGATAACACCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGACTGACTTCAGCTTGTCAGCTGGACCATCTCGATAACACCCC  800

seq1  ATCCCGTTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTAGACAGGATCTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGTTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTAGACAGGATCTCA  850

seq1  CTATATAGCTCTGACTAGCCTGGCACTTGCTCTGTAGACCAGACTGTGTT  896
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  CTATATAGCTCTGTCAAGCCTGGCACTTGCTCTGTAGACCAGACTGTGTT  900

seq1  GAATTC  902
      ||||||
seq2  GAATTC  906

seq1: chr11_57831614_57832804
seq2: B6Ng01-179A16.g_63_926

seq1  GAATTCAACTGAGTTAACACCTGTGCTCAGGTACAGGGAATTTGCATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGAGTTAACACCTGTGCTCAGGTACAGGGAATTTGCATTGT  50

seq1  CTCAGAGAGGCTGCTAAGTGTCTTCCTGAGAAGACAGGCCTAAGGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAGGCTGCTAAGTGTCTTCCTGAGAAGACAGGCCTAAGGAGGTG  100

seq1  GGCTTTGTTTCAGTCCAGAACCTAGTTGTCAGCTCTATTCGGGCAGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTTTCAGTCCAGAACCTAGTTGTCAGCTCTATTCGGGCAGTTGT  150

seq1  GCCCTGGTGTTCAGTTTTCCTCCTCCTCTTTTTAAGAGAATGGGAATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGTGTTCAGTTTTCCTCCTCCTCTTTTTAAGAGAATGGGAATTAC  200

seq1  TAAAATTGGAAGAGGCTGCAAAGATAGACTCCTCCTTTGCAGGGTACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGGAAGAGGCTGCAAAGATAGACTCCTCCTTTGCAGGGTACTTC  250

seq1  ATTTGCAGAATTTAGATGGGAGGTGCTTGCACTCGGGGATTGCAGAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGAATTTAGATGGGAGGTGCTTGCACTCGGGGATTGCAGAGGGT  300

seq1  TCCGTCTTGAGACTGGGTTACTTTGGTGTGAGACAGGATGAGTGTAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTTGAGACTGGGTTACTTTGGTGTGAGACAGGATGAGTGTAGGAC  350

seq1  AGGAGAGGTCTGTAAGAGGAGGAGACTGCCACCTCCTGGGAACAGAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGTCTGTAAGAGGAGGAGACTGCCACCTCCTGGGAACAGAGAGT  400

seq1  GAGGAAGACACTGGGCACATTTCCAGTCACCTACTTCAGCTCAGTCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGACACTGGGCACATTTCCAGTCACCTACTTCAGCTCAGTCTCCA  450

seq1  CTAACAGACATTTCTAAAGTCTCCTAAAATTGTGTATTCAAACCATGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGACATTTCTAAAGTCTCCTAAAATTGTGTATTCAAACCATGGCA  500

seq1  CTCAACCTACTAGTACCAGTAGGTGAAGGTGAGTTTAGCTGAGAGTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTACTAGTACCAGTAGGTGAAGGTGAGTTTAGCTGAGAGTGTGC  550

seq1  AAGAGTTTCCCAGGAGCCTGGCCCAGAGACTGGGGTTTTAGTTACTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTCCCAGGAGCCTGGCCCAGAGACTGGGGTTTTAGTTACTCTCC  600

seq1  AGGCCTTGGATTTGGCCTTTTATTTTGCTTAACAGGATATTGTTGAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGGATTTGGCCTTTTATTTTGCTTAACAGGATATTGTTGAAGCC  650

seq1  ATTCTTCCTCATGACCCAGCATCTTCTATCACTTTTCCTAGAATTTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTCATGACCCAGCATCTTCTATCACTTTTCCTAGAATTTGGAC  700

seq1  CTGTGCATAGAAAGGAAGGTAATAGTTGCTGTCACATCTTTTAACTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATAGAAAGGAAGGTAATAGTTGCTGTCACATCTTTTAACTGGTT  750

seq1  TTCCTCCTGACCCTGCCCTCTGCTGGTTTATCATAGAGGTGAACTTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTGACCCTGCCCTCTGCTGGTTTATCATAGAGGTGAACTTAAGA  800

seq1  ACCTTGTAAGAGTCTGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTT  850
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  ACCTTGTAAGAGTCTGGGCGTGGTGGCGCACGCTTTTTATCCCAGCACTT  850

seq1  -GGGGGTGGGGTG-GCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCC  898
       ||||||||||||                                     
seq2  GGGGGGTGGGGTGT------------------------------------  864

seq1  TGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATACCAGAGAAACTC  948
                                                        
seq2  --------------------------------------------------  864

seq1  TGTCTCCAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAGA  998
                                                        
seq2  --------------------------------------------------  864

seq1  ACCTTGTAAGAGGCAGGAGGATTTACCAGTGTGACATGGAGGAGGAGGAG  1048
                                                        
seq2  --------------------------------------------------  864

seq1  GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATATACCGAGTGGCAGACA  1098
                                                        
seq2  --------------------------------------------------  864

seq1  TGGACTAAAATAAACAGGTTAAGTTAGAGTTTGTTGGGAGGTTAAAAAAG  1148
                                                        
seq2  --------------------------------------------------  864

seq1  AAAAAAAAAAGAAACTTAAGAAGCCCAAATGGAGGTGGGGTGT  1191
                                                 
seq2  -------------------------------------------  864