BAC Information

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BAC

Clone NameB6Ng01-179B05
Chromosome11 (Build37)
Map Location 102,670,194 - 102,814,171
singlet/doubletdoublet
Overlap geneHigd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1
Upstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7
Downstream geneDcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179B05.bB6Ng01-179B05.g
ACCGA005895GA005896
length1,056370
definitionB6Ng01-179B05.b B6Ng01-179B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,670,194 - 102,671,233)(102,813,806 - 102,814,171)
sequence
gaattctttccagctacgcaatggctcataaccactgttactctggttct
agaagatctgatgccttcttctggccactgcaggcataagacatgtatgt
ggtacacagacatacgtgtagacaaaacacctatccacacaaattaagta
aattgaaaattaactttaatataaagtaaaagccagatgaacccaagata
gttcagcagttagcagcagttaacagcataccctgctcttgtgaggtcca
gagtccaattcccaatatccacatcatatacccccagctccagatctcgc
actcacatgtacaacccacccagagatacacatatacacacagaattaca
gatagaataaatctttttaaaaagccggacagcttagctatggtagcaaa
gtttataattacagcactcaggctgctaaagcacgacatctttagttcaa
ggcaaacttgggatataacaggattctatgtatttctgtatatcttaatt
aacactagggggaaaaaatctgtaaaacagtagttattcactccttaaat
aatagacactacctggcagagacgctgagaggagggaagccacacagacc
tctaattacccaagctaactcgagggcttctagagcaaggaggagcacac
gaagcacagcatactcacgagtggaggacagcccatacaggcggaagcag
gaggaactctgagggcagaacactaggtcatgagaaggatgctgaaggtg
ggtacagcacacaattccattcatataagcacctttcttgggatgactgt
tgtgtgcacactcaatcccagcactgaggaagcaaacacagggtagttct
ctgagctcaaagtcagcatgagacacagagaaaactggtttaaaagaaaa
aacaacaataaatatccttttttaaaaaaagatttacttattatatgtag
taccctgtagtgtctgcagaccccccagaaaaggttgtcagatcccatta
cgggtggctgtgaagccacatagcgatgcctgggattggaactctaggaa
cttccg
ttctttccaccactggaatgggtcaagatagacttctgagagccagactg
gatcctcctccagaggtatgtacccccttaccccaaatcacaactcaaat
tctattctcctgtgctttctgacccaatatccttcttctccaagggggag
gagtcttagattatgaaagcctttcatgacccctttggaaagggataaat
taaaatgccatggtgggaatggaaatattttaatgtataccacagggaag
ctatccttactgtgagaaaaacagccttccagacctttcctggacaattg
ctcagaccagaagccctagctgggtagggtggcacgtgcccgtggatggg
ggcgagggttataatagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102670194_102671233
seq2: B6Ng01-179B05.b_59_1096

seq1  CAATGGCTCATAACCACCTGTTACTCTGGTTCTAGAAGATCTGATGCCTT  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAATGGCTCATAACCA-CTGTTACTCTGGTTCTAGAAGATCTGATGCCTT  49

seq1  CTTCTGGCCACTGCAGGCATAAGACATGTATGTGGTACACAGACATACAT  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTCTGGCCACTGCAGGCATAAGACATGTATGTGGTACACAGACATACGT  99

seq1  GTAGACAAAACACCTATACACACAAATTAAGTAAATTGAAAATTAACTTT  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAGACAAAACACCTATCCACACAAATTAAGTAAATTGAAAATTAACTTT  149

seq1  AATATAAAGTAAAAGCCAGATGAACCCAAGATAGTTCAGCAGTTAGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGTAAAAGCCAGATGAACCCAAGATAGTTCAGCAGTTAGCAGC  199

seq1  AGTTAACAGCATACCCTGCTCTTGTAGAGGTCCAGAGTCCAATTCCCAAT  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTTAACAGCATACCCTGCTCTTGT-GAGGTCCAGAGTCCAATTCCCAAT  248

seq1  ATCCACATCAGATACCCCCAGCTCCAGATCTCGCACTCACATGTACAACC  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATCATATACCCCCAGCTCCAGATCTCGCACTCACATGTACAACC  298

seq1  CACCCAGAGATACACATATACACACAGAATTACAGATAGAATAAATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAGATACACATATACACACAGAATTACAGATAGAATAAATCTTT  348

seq1  TTAAAAAGCCAGACAGCTTAGCTATGGTAGCAAAGTTTATAATTACAGCA  400
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGCCGGACAGCTTAGCTATGGTAGCAAAGTTTATAATTACAGCA  398

seq1  CTCAGGCTGCTAAAGCAGGACATCATTAGTTCAAGGCAAACTTGGGATAT  450
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  CTCAGGCTGCTAAAGCACGACATCTTTAGTTCAAGGCAAACTTGGGATAT  448

seq1  AACAGGATTCTATGTATTTCTGTATATCTTAATTAACACTAGGGGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATTCTATGTATTTCTGTATATCTTAATTAACACTAGGGGGAAAA  498

seq1  AATCTGTAAAACAGTAGTTATTCACTCCTTAAATAATAGACACTACATGG  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATCTGTAAAACAGTAGTTATTCACTCCTTAAATAATAGACACTACCTGG  548

seq1  CAGAGACGCTGAGAGGAGGGAAGCCACACAGACCTCTAATTACCCAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACGCTGAGAGGAGGGAAGCCACACAGACCTCTAATTACCCAAGCT  598

seq1  AACTCGAGGGTTTCTAGAGCAAGGAGGAGCACACAAAGCACAGCAGACTC  650
      |||||||||| ||||||||||||||||||||||| |||||||||| ||||
seq2  AACTCGAGGGCTTCTAGAGCAAGGAGGAGCACACGAAGCACAGCATACTC  648

seq1  ACGAGTGGAGGACAGCCCAGACAGGCGGAAGCAGGAGGAACTCAGAGGGC  700
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  ACGAGTGGAGGACAGCCCATACAGGCGGAAGCAGGAGGAACTCTGAGGGC  698

seq1  AGAACACTAGGTCATGAGAAGGAGGCTGAAGGTGGGTACAGCACACAATT  750
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAACACTAGGTCATGAGAAGGATGCTGAAGGTGGGTACAGCACACAATT  748

seq1  CCATTCATATAAGCACCTTTCTTGGGATGACTGTGGTGTGCACATTCAAT  800
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  CCATTCATATAAGCACCTTTCTTGGGATGACTGTTGTGTGCACACTCAAT  798

seq1  CCCAGCACTGAGGAAGCAAACACAGGG-AGTTCTCTGAGCTCAAAGTCAG  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCAGCACTGAGGAAGCAAACACAGGGTAGTTCTCTGAGCTCAAAGTCAG  848

seq1  CAAGAGACACAGTG-AAACTGTTTAAAAAGAAAAAACAAACAATAAAAAT  898
      || ||||||||| | |||||| || |||||||||||| ||||||||| ||
seq2  CATGAGACACAGAGAAAACTGGTTTAAAAGAAAAAAC-AACAATAAATAT  897

seq1  ACTTTTTTAAAAAAAAGATTTATTTATTATATGTAAGTACACTGTAGCTG  948
       ||||||| ||||||||||||| ||||||||||| ||||| |||||| ||
seq2  CCTTTTTT-AAAAAAAGATTTACTTATTATATGT-AGTACCCTGTAG-TG  944

seq1  TCTTCAGACACCCCAGAAGAGGGCGTCAGATCTCATTACGGGTGGTTGTG  998
      ||| ||||| |||||||| |||  |||||||| |||||||||||| ||||
seq2  TCTGCAGACCCCCCAGAAAAGGTTGTCAGATCCCATTACGGGTGGCTGTG  994

seq1  -AGCCACCATGTGGTTGCTGGGATTTGAACT-TAGGACCTTCAG  1040
       ||||||   | | |  |||||||| ||||| ||||| |||| |
seq2  AAGCCACATAGCGATGCCTGGGATTGGAACTCTAGGAACTTCCG  1038

seq1: chr11_102813806_102814171
seq2: B6Ng01-179B05.g_67_431 (reverse)

seq1  ACCCTCACCCCCCTCCAAGGGCACGTACCACCCTACCCAGCTAGGGCTTC  50
      |||||| ||||| |||| |||||||| |||||||||||||||||||||||
seq2  ACCCTCGCCCCCATCCACGGGCACGTGCCACCCTACCCAGCTAGGGCTTC  50

seq1  TGGGCTGAGCAATTGTCCAGGAAAGCTCTGGAAGGCTGTGTTGCTCACAG  100
      ||| ||||||||||||||||||||| ||||||||||||| || |||||||
seq2  TGGTCTGAGCAATTGTCCAGGAAAGGTCTGGAAGGCTGTTTTTCTCACAG  100

seq1  TAAGGATAGCTTCCCAGTGGTATCTATTAAAATATTTCCATTCCCACCAT  150
      ||||||||||||||| |||||||  |||||||||||||||||||||||||
seq2  TAAGGATAGCTTCCCTGTGGTATACATTAAAATATTTCCATTCCCACCAT  150

seq1  GGCATTTTAATTTAGACATTTCCATAGTTGTCATGAAAGGCTTTCATAAT  200
      ||||||||||||||  | |||||| ||  |||||||||||||||||||||
seq2  GGCATTTTAATTTATCCCTTTCCAAAGGGGTCATGAAAGGCTTTCATAAT  200

seq1  TTAAGACTCCTCCCCCTTGGAGAAGAATGATATTGGGCCAGAAAGCACAG  250
       |||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  CTAAGACTCCTCCCCCTTGGAGAAGAAGGATATTGGGTCAGAAAGCACAG  250

seq1  GAGAATAGAATTTGAGTTGTGATTTGGGGTAAGGGGGTACATACCTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGAATAGAATTTGAGTTGTGATTTGGGGTAAGGGGGTACATACCTCTGG  300

seq1  AGGCTGATCCAGTCTGGCTCTCAGAACTCTATCTTGACCCATCTCAGAGG  350
      |||  ||||||||||||||||||||| |||||||||||||||  ||| ||
seq2  AGGAGGATCCAGTCTGGCTCTCAGAAGTCTATCTTGACCCATTCCAGTGG  350

seq1  TTGGAAAGAAGAATTC  366
       |||||||||||||||
seq2  -TGGAAAGAAGAATTC  365