BAC Information

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BAC

Clone NameB6Ng01-179E14
Chromosome11 (Build37)
Map Location 10,868,372 - 11,015,402
singlet/doubletdoublet
Overlap geneVwc2
Upstream geneLOC382483
Downstream geneZpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179E14.bB6Ng01-179E14.g
ACCGA006047GA006048
length1,161907
definitionB6Ng01-179E14.b B6Ng01-179E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,868,372 - 10,869,525)(11,014,504 - 11,015,402)
sequence
gaattctaagcccttgattttggtcaaggacgttctaggactgttggaac
actggcgaaaggctttagccatgtcagaattcaattttaaaaagcactta
taataggaaaatactgaaagagagcatgtggatctatacactagactaac
gtggtaatggaacgtgggaatgaaaaattaatgtataggtagagaatgct
agactccaggaggagagcttccttgaaactcttttgcctcatgagtgact
tttaagccttttggcttatccagctgactcaagcggagagcgtagcatgt
agcttattttaattagatcatttgttctcttgattccttgtattttttat
atggtcttgatattagccattcattttgtattcagctaaacaagaaagag
tattgttccatctacctatattgaaatttcatgatttcatctttctaaac
agctgaatagaattcactgttgatatggactacagtttcattgccattca
ttgggtgattgtcaggataggcaactaatgttcacatactctctgtgttg
tgatagttataatttgctatacaagaaggttctttgataaagaactaaga
gctacacttatctgtgaacataaggttaaatatttacaaattggttattt
gtgtctgtaaatttttggcctaggccactccatttcctacattctgtgaa
tagagcagcaataaacagaatccaacgactgtctctgtagtaggatatgg
aaccctttgaagtatgtaccaatgagtagtacagctaagcatatctgatt
ttagccttctgaaaaatttccacatagcatctatgatcaattttcacaat
ttgtacttccacctttcctaatcccttaccagcatttgttttctagtttg
ttttttcttaatcttagcccattctgactgagctaggatggatttccaaa
gtagtcttaatttgtatttccttattgctaagagttatatttaaaaagaa
tgtttcttattatttatactgttgggaaattctctgtcagatattacagc
ttactttttaattaagacccctatgtttcttgatttttgtattttttcct
tattcttgatattagcacttatttggatataagatgacagtaaagagtct
tttctaatttt
gaattccgcagtggagttggagactgacaaacgtgcgcgcaaattaaaga
gaaacccttcctctcctgcccaaggggtttgtgcatggaaaggaagctgg
gggagaagtgagagaaaaagaaaaacacccccttccaacaaaaccaaaac
cttgctgctactctgaagaccccacaactcatttgtaacttcttagatgc
ctgctctctagggagtacatgcccctctgttctctaagctaggcactatc
tgggctttgcctggttggccgggtccaggattcctgaggctttactcctt
agccgctaccccacttccagtattggctcttcactaggagatgtggaggg
tgactgtgagcgctgcttccggctagagcgctatcttggagtagcaaata
acctggaggggtcttggtgatggataagtgatgctcgcccagggagtact
gagaaggaaggaggggagtgcagggtcataggactagggccaaggctatc
ttactgaagggcctcttccagccttttgtggatctcaaagtttctgccac
ccaaaggagtctagagccccccaggcatcgctgggtacagacattccagt
ctctattttgcttctgccaaacactcacccttctccgtgcgcaccagttg
cctctgtccccctctatctctgccagcccttttctatttaggactccaat
taaggctggcctctggctcaccgccaatgccagtggacctcagctcaggg
cgagtcgcccatattttaaaacttggcaggcaggaaggggtccctctcct
tcagatcggccatagagtactttccgggggcgtccccatgcctgcggtgc
ggaccttccacatgcaccctcaccccggcggagtggcacctacattacat
gagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_10868372_10869525
seq2: B6Ng01-179E14.b_45_1205

seq1  GAATTCTAAGCCCTTGATTTTGGTCAAGGACGTTCTAGGACTGTTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCCCTTGATTTTGGTCAAGGACGTTCTAGGACTGTTGGAAC  50

seq1  ACTGGCGAAAGGCTTTAGCCATGTCAGAATTCAATTTTAAAAAGCACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGAAAGGCTTTAGCCATGTCAGAATTCAATTTTAAAAAGCACTTA  100

seq1  TAATAGGAAAATACTGAAAGAGAGCATGTGGATCTATACACTAGACTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAAAATACTGAAAGAGAGCATGTGGATCTATACACTAGACTAAC  150

seq1  GTGGTAATGGAACGTGGGAATGAAAAATTAATGTATAGGTAGAGAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAATGGAACGTGGGAATGAAAAATTAATGTATAGGTAGAGAATGCT  200

seq1  AGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACT  250

seq1  TTTAAGCCTTTTGGCTTATCCAGCTGACTCAAGCGGAGAGCGTAGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCTTTTGGCTTATCCAGCTGACTCAAGCGGAGAGCGTAGCATGT  300

seq1  AGCTTATTTTAATTAGATCATTTGTTCTCTTGATTCCTTGTATTTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATTTTAATTAGATCATTTGTTCTCTTGATTCCTTGTATTTTTTAT  350

seq1  ATGGTCTTGATATTAGCCATTCATTTTGTATTCAGCTAAACAAGAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTGATATTAGCCATTCATTTTGTATTCAGCTAAACAAGAAAGAG  400

seq1  TATTGTTCCATCTACCTATATTGAAATTTCATGATTTCATCTTTCTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCCATCTACCTATATTGAAATTTCATGATTTCATCTTTCTAAAC  450

seq1  AGCTGAATAGAATTCACTGTTGATATGGACTACAGTTTCATTGCCATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAGAATTCACTGTTGATATGGACTACAGTTTCATTGCCATTCA  500

seq1  TTGGGTGATTGTCAGGATAGGCAACTAATGTTCACATACTCTCTGTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGATTGTCAGGATAGGCAACTAATGTTCACATACTCTCTGTGTTG  550

seq1  TGATAGTTATAATTTGCTATACAAGAAGGTTCTTTGATAAAGAACTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTATAATTTGCTATACAAGAAGGTTCTTTGATAAAGAACTAAGA  600

seq1  GCTACACTTATCTGTGAACATAAGGTTAAATATTTACAAATTGGTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACTTATCTGTGAACATAAGGTTAAATATTTACAAATTGGTTATTT  650

seq1  GTGTCTGTAAA-TTTTGGCCTAGGCCACTCCATTTCCTACATTCTGTGAA  699
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTAAATTTTTGGCCTAGGCCACTCCATTTCCTACATTCTGTGAA  700

seq1  TAGAGCAGCAATAAACAGAATCCAACGACTGTCTCTGTAGTAGGATATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGCAATAAACAGAATCCAACGACTGTCTCTGTAGTAGGATATGG  750

seq1  AACCC-TTGAAGTATGTACCAATGAGTAGTACAGCTAAGCATATCTGATT  798
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTGAAGTATGTACCAATGAGTAGTACAGCTAAGCATATCTGATT  800

seq1  TTAGCCTTCTGAAAAATTTCCACATAGCATCTATGATC-ATTTTCACAAT  847
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTAGCCTTCTGAAAAATTTCCACATAGCATCTATGATCAATTTTCACAAT  850

seq1  TTGTACTTCCACCTTTCCTAATCCCTTACCAGCATTTGTTTTCTAGTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTCCACCTTTCCTAATCCCTTACCAGCATTTGTTTTCTAGTTTG  900

seq1  TTTTTTCTTAATCTTAG-CCATTCTGACTGAGCTAGGATGAATTT-CAAA  945
      ||||||||||||||||| |||||||||||||||||||||| |||| ||||
seq2  TTTTTTCTTAATCTTAGCCCATTCTGACTGAGCTAGGATGGATTTCCAAA  950

seq1  GTAGTCTTAATTTGTATTTTCCTTATTGCTAAGAG-TATATTTTAAAAG-  993
      |||||||||||||||| |||||||||||||||||| ||||||| ||||| 
seq2  GTAGTCTTAATTTGTA-TTTCCTTATTGCTAAGAGTTATATTTAAAAAGA  999

seq1  ATGTTTCTTATTATTTATACTGTTGGG-AATTCTCTGTTCAGATA-TACA  1041
      ||||||||||||||||||||||||||| ||||||||| ||||||| ||||
seq2  ATGTTTCTTATTATTTATACTGTTGGGAAATTCTCTG-TCAGATATTACA  1048

seq1  GCTTAC-TTTTAATT-AGA-CCCTATGTTTTCTTGATTTTTTGTA-TTTT  1087
      |||||| |||||||| ||| ||||||| |||||||| |||||||| ||||
seq2  GCTTACTTTTTAATTAAGACCCCTATG-TTTCTTGA-TTTTTGTATTTTT  1096

seq1  TCTTTATTCTTGATATTAGCCACTTATTT-GATATACAGATGAACAAGAA  1136
      || |||||||||||||||| ||||||||| |||||| ||||| |||  ||
seq2  TCCTTATTCTTGATATTAG-CACTTATTTGGATATA-AGATG-ACAGTAA  1143

seq1  AGAGTCTTTCCTAATTTT  1154
      ||||||||| ||||||||
seq2  AGAGTCTTTTCTAATTTT  1161

seq1: chr11_11014504_11015402
seq2: B6Ng01-179E14.g_69_975 (reverse)

seq1  TGAGCTCATGT-ATGTAGGTGCCACTCCGCCGGGGTGAGGGTGCATGTTG  49
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  TGAGCTCATGTAATGTAGGTGCCACTCCGCCGGGGTGAGGGTGCATGTGG  50

seq1  GAGGTCCGCACCGCAGGCATGGGGACGCCCCCGGAAAGTACTCTATGGCC  99
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCGCACCGCAGGCATGGGGACGCCCCCGGAAAGTACTCTATGGCC  100

seq1  GATCTGAAGGAGA-GGACCCCTTCCTGCCTGCCAAGTTTT-AAATATGGG  147
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  GATCTGAAGGAGAGGGACCCCTTCCTGCCTGCCAAGTTTTAAAATATGGG  150

seq1  CGACTCGCCCTGAGCTGAGGTCCACTGGCATTGGCGGTGAGCCAGAGGCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCGCCCTGAGCTGAGGTCCACTGGCATTGGCGGTGAGCCAGAGGCC  200

seq1  AGCCTTAATTGGAGTCCT-AATAG-AAAGGGCTGGCAGAGATAGAGGGGG  245
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  AGCCTTAATTGGAGTCCTAAATAGAAAAGGGCTGGCAGAGATAGAGGGGG  250

seq1  ACAGAGGC-ACTGGTGCGCACGGAG-AGGGTGAGTGTTTGGCAGAAGC-A  292
      |||||||| |||||||||||||||| |||||||||||||||||||||| |
seq2  ACAGAGGCAACTGGTGCGCACGGAGAAGGGTGAGTGTTTGGCAGAAGCAA  300

seq1  AATAGAGACTGGAATGTCTGTACCCAGCGATGCCTGGGGGGCTCTAGACT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGACTGGAATGTCTGTACCCAGCGATGCCTGGGGGGCTCTAGACT  350

seq1  CCTTTGGGTGGCAGAAACTTTGAGATCCACAAAAGGCTGGAAGAGGCCCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGTGGCAGAAACTTTGAGATCCACAAAAGGCTGGAAGAGGCCCT  400

seq1  TCAGTAAGATAGCCTTGGCCCTAGTCCTATGACCCTGCACTCCCCTCCTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGATAGCCTTGGCCCTAGTCCTATGACCCTGCACTCCCCTCCTT  450

seq1  CCTTCTCAGTACTCCCTGGGCGAGCATCACTTATCCATCACCAAGACCCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAGTACTCCCTGGGCGAGCATCACTTATCCATCACCAAGACCCC  500

seq1  TCCAGGTTATTTGCTACTCCAAGATAGCGCTCTAGCCGGAAGCAGCGCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTATTTGCTACTCCAAGATAGCGCTCTAGCCGGAAGCAGCGCTC  550

seq1  ACAGTCACCCTCCACATCTCCTAGTGAAGAGCCAATACTGGAAGTGGGGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACCCTCCACATCTCCTAGTGAAGAGCCAATACTGGAAGTGGGGT  600

seq1  AGCGGCTAAGGAGTAAAGCCTCAGGAATCCTGGACCCGGCCAACCAGGCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTAAGGAGTAAAGCCTCAGGAATCCTGGACCCGGCCAACCAGGCA  650

seq1  AAGCCCAGATAGTGCCTAGGTTAGAGAACAGAGGGGCATGTACTCCCTAG  692
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGCCCAGATAGTGCCTAGCTTAGAGAACAGAGGGGCATGTACTCCCTAG  700

seq1  AGAGCAGGCATCTAAGAAGTTACAAATGAGTTGTGGGGTCTTCAGAGTAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGCATCTAAGAAGTTACAAATGAGTTGTGGGGTCTTCAGAGTAG  750

seq1  CAGCAAGGTTTTGGTTTTGTTGGAAGGGGGTGTTTTTCTTTTTCTCTCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGTTTTGGTTTTGTTGGAAGGGGGTGTTTTTCTTTTTCTCTCAC  800

seq1  TTCTCCCCCAGCTTCCTTTCCATGCACAAACCCCTTGGGCAGGAGAGGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCCAGCTTCCTTTCCATGCACAAACCCCTTGGGCAGGAGAGGAA  850

seq1  GGGTTTCTCTTTAATTTGCGCGCACGTTTGTCAGTCTCCAACTCCACTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTTTAATTTGCGCGCACGTTTGTCAGTCTCCAACTCCACTGC  900

seq1  GGAATTC  899
      |||||||
seq2  GGAATTC  907