BAC Information

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BAC

Clone NameB6Ng01-179F22
Chromosome11 (Build37)
Map Location 25,428,576 - 25,429,739
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042282
Downstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179F22.bB6Ng01-179F22.g
ACCGA006110GA006111
length1,1661,180
definitionB6Ng01-179F22.b B6Ng01-179F22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagaaaaagctcagacagtctcctgatgcatccttgaagccca
aagactatgtcttgccttcaaatagtggttcttcctagctcttgaattcc
attcctgcctatggtggaaccctgagcctagtgctagaagtggtttgtga
caaattgagaaaaagatccaaggttagactctgggcagagtgcttctagg
aaatggtatgtgatacagaaaacctgaacctcaaacctccctcaacatgg
cactaaaacattcatttctttcagggacaacatggagctttgacaagtac
ctttacatacagcaggtaacaaatgctgagtgttttgagtctgcattttg
cacagttaactcagccattgttcctggaaaacagatggtgtttccctgca
aagtaccagactccttgtttgtgttgtcttctatggttgctgctcggcct
gacctaggaagtggtctgcacttacttcacatgggacaataacgagatct
gagtgagtagtcggtgcaaaagtacagacgggaggtggtatcacttgcac
tacatgggactctgatgtctgatgtcaaaaatgccttgttcttcttatcc
ctgggctaatctagagaaacagagagagctgagaggacaatgaaagctgg
cagaaacaggaagatggcaggaggcagggaaagggaggaaaggaccagaa
gcctgcaatctaaatgaaagttttctatactatctgtggtgcttttttga
ggactgaagtttggatattaaatcttaaaatggagcacttgggaaaggag
actaattctgggacaaagtaacataatcctatagcctcaggcatccagaa
aagctaaggcaggagaattgagagattagattgaactacatagcagaatc
ttactcaaattatcaaactgggacagctagacaaagggaggagaagacca
gggagatagacacacacacacacacacacacacactcacacgagagagac
ggagagagactgagagagacgagaagtgacgagtagagactgagagagac
gaagtgagagacatgaaagaacacctttaatgggagcctggatcatagcc
ggctgaactgataagttttacaaattcagtaatactagatgtcctctgga
ctttcctgtgtgtctg

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaaggtcataaattcaggcgacag
tagatgctggtgaggatgtggggaatgaggaacacttctccatttctggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaatcatacatagtactactgaaagatccagcaataccactcctggc
catatacccagaagatgctccaacttgtaataaggacacatgatccacta
tgttcatagcagactatttataatatccagaagttggaaagagcccagat
gttcctcaatagaggaatgaatacagaaaatgtggtccgtttacacaatg
gagtactacttaactattaaaaacaatggatttatgaaattcttaggcta
atggatgtatctggaggatatcttcctgagtgaggtaacccaatcacaaa
agaacacacatgatatttactcactgataagtggatattagcccagaaac
ttagaataccccagatataatttgcaaaacacttgaaactcaagaaggag
gaggaccaaagtgtggatacttcgttccttcttagaacagggagcaaaat
atccatggaaggagtttcagagacaaagttcagaactaagactgaaggaa
ggaccacgaagatctgtcccataaacaaccaccaaacccagacactattg
catatgccaactagattttgctgactggaccctaaatatagctgtctctt
gtgaggctatgccagtgcctggaaaatacagaagtgtatgctcacagttc
atctatttgatggaacacagggccccaatgaaggaactagagaaagtacc
cattggaagctgaaggggtctgcaaccctatagggaggaaacaccattat
gaaccaaccagtacccacagaagcttcatgtctcttagttgcatatggta
gcagagcatggtcctagtagccgtaatggaaggaataggcctgtcttgtg
aggattatatggcccaagtatcggtatggccaggaccagtagccatgcat
aaggttggtctggtggaatgcggcatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25428576_25429739
seq2: B6Ng01-179F22.b_48_1213 (reverse)

seq1  CAGACACACAGAAATGT-CAGAGG-CATCTATGTTATTACTGAAATTTGT  48
      ||||||||||| || || |||||| ||||||   |||||||| |||||||
seq2  CAGACACACAGGAAAGTCCAGAGGACATCTA--GTATTACTG-AATTTGT  47

seq1  AAAAACTTATCAG-TCAGCGGGCCTATGGATCCA-GCTCCCATTTAAGGT  96
       |||||||||||| ||||| || |||| |||||| ||||||||| |||||
seq2  -AAAACTTATCAGTTCAGCCGG-CTAT-GATCCAGGCTCCCATTAAAGGT  94

seq1  TGTCTTTC-TGTCTCTCACTCTCTGTCTCTCTCTGTCTCT-CTCTGTCTC  144
        |||||| ||||||||||| || ||||||||| |||||| ||| ||| |
seq2  GTTCTTTCATGTCTCTCACT-TC-GTCTCTCTCAGTCTCTACTC-GTCAC  141

seq1  TCTCT-GTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTGTGAGTGTGTGT  193
      | ||| ||||||||| ||||||||| ||||||||| ||||||||||||||
seq2  T-TCTCGTCTCTCTCAGTCTCTCTCCGTCTCTCTC-GTGTGAGTGTGTGT  189

seq1  GTGTGTGTGTGTGTGTGTCTATCTCCCT-GTCTTCTCCT-CCTTTGTCTA  241
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  GTGTGTGTGTGTGTGTGTCTATCTCCCTGGTCTTCTCCTCCCTTTGTCTA  239

seq1  GCTGTCCCAGTTTGATAATTTGAGTAAGATTCTGCTATGTAGTTCAATCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCAGTTTGATAATTTGAGTAAGATTCTGCTATGTAGTTCAATCT  289

seq1  AATCTCTCAATTCTCCTGCCTTAGC-TTTCTGGATG-CTGAGGCTATAGG  339
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  AATCTCTCAATTCTCCTGCCTTAGCTTTTCTGGATGCCTGAGGCTATAGG  339

seq1  ATTATGTTACTTTGT-CCAGAATTAGTCTCCTTT-CCAAGTGCTCCATTT  387
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  ATTATGTTACTTTGTCCCAGAATTAGTCTCCTTTCCCAAGTGCTCCATTT  389

seq1  TAAGATTTAATATCCAAACTTCAGTCCTCAAAAAAGCACCACAGATAGTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTAATATCCAAACTTCAGTCCTCAAAAAAGCACCACAGATAGTA  439

seq1  TAGAAAACTTTCATTTAGATTGCAGGCTTCTGGTCCTTTCCTCCCTTTCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACTTTCATTTAGATTGCAGGCTTCTGGTCCTTTCCTCCCTTTCC  489

seq1  CTGCCTCCTGCCATCTTCCTGTTTCTGCCAGCTTTCATTGTCCTCTCAGC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTGCCATCTTCCTGTTTCTGCCAGCTTTCATTGTCCTCTCAGC  539

seq1  TCTCTCTGTTTCTCTAGATTAGCCCAGGGATAAGAAGAACAAGGCATTTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTTTCTCTAGATTAGCCCAGGGATAAGAAGAACAAGGCATTTT  589

seq1  TGACATCAGACATCAGAGTCCCATGTAGTGCAAGTGATACCACCTCCCGT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAGACATCAGAGTCCCATGTAGTGCAAGTGATACCACCTCCCGT  639

seq1  CTGTACTTTTGCACCGACTACTCACTCAGATCTCGTTATTGTCCCATGTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTTTGCACCGACTACTCACTCAGATCTCGTTATTGTCCCATGTG  689

seq1  AAGTAAGTGCAGACCACTTCCTAGGTCAGGCCGAGCAGCAACCATAGAAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTGCAGACCACTTCCTAGGTCAGGCCGAGCAGCAACCATAGAAG  739

seq1  ACAACACAAACAAGGAGTCTGGTACTTTGCAGGGAAACACCATCTGTTTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAAACAAGGAGTCTGGTACTTTGCAGGGAAACACCATCTGTTTT  789

seq1  CCAGGAACAATGGCTGAGTTAACTGTGCAAAATGCAGACTCAAAACACTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAACAATGGCTGAGTTAACTGTGCAAAATGCAGACTCAAAACACTC  839

seq1  AGCATTTGTTACCTGCTGTATGTAAAGGTACTTGTCAAAGCTCCATGTTG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTTACCTGCTGTATGTAAAGGTACTTGTCAAAGCTCCATGTTG  889

seq1  TCCCTGAAAGAAATGAATGTTTTAGTGCCATGTTGAGGGAGGTTTGAGGT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAAGAAATGAATGTTTTAGTGCCATGTTGAGGGAGGTTTGAGGT  939

seq1  TCAGGTTTTCTGTATCACATACCATTTCCTAGAAGCACTCTGCCCAGAGT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTTCTGTATCACATACCATTTCCTAGAAGCACTCTGCCCAGAGT  989

seq1  CTAACCTTGGATCTTTTTCTCAATTTGTCACAAACCACTTCTAGCACTAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTGGATCTTTTTCTCAATTTGTCACAAACCACTTCTAGCACTAG  1039

seq1  GCTCAGGGTTCCACCATAGGCAGGAATGGAATTCAAGAGCTAGGAAGAAC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGTTCCACCATAGGCAGGAATGGAATTCAAGAGCTAGGAAGAAC  1089

seq1  CACTATTTGAAGGCAAGACATAGTCTTTGGGCTTCAAGGATGCATCAGGA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTGAAGGCAAGACATAGTCTTTGGGCTTCAAGGATGCATCAGGA  1139

seq1  GACTGTCTGAGCTTTTTCTCTGAATTC  1164
      |||||||||||||||||||||||||||
seq2  GACTGTCTGAGCTTTTTCTCTGAATTC  1166


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