MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-179G18
Chromosome	11 (Build37)
Map Location	46,007,604 - 46,008,739
singlet/doublet	singlet
Overlap gene	Cyfip2
Upstream gene	LOC382510, LOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik
Downstream gene	C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC382510 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382510
definition	gene_synonym : Gm1911 note : tRNA-yW synthesizing tRNA-yW synthesizing pseudogene pseudo : _no_value

name	LOC633082 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:633082
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1381 ESTs, 12 Proteins pseudo : _no_value

name	Clint1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216705 MGI:2144243
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lsm11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72290 MGI:1919540
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Thg1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66628 MGI:1913878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sox30 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214105 MGI:1341157
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667037 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667037
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100039624 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039624
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 133 ESTs, 1 Protein

name	Adam19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11492 MGI:105377
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9530066K23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214112 MGI:2444671
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cyfip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76884 MGI:1924134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C030019I05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320116 MGI:2443410
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038833 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038833
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039577 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039577
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Itk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16428 MGI:96621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000005491 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432552 MGI:3650836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Crsp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66213 MGI:1913463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039730 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039730
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 3 Proteins pseudo : _no_value

name	Havcr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171285 MGI:2159682
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC210535 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:210535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 1 Protein

name	LOC675689 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675689
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC435256 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	BC053393 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:407814 MGI:3039605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dppa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:347708 MGI:2157522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG237749 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237749 MGI:3646427
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	Timd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171284 MGI:2159681
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC620678 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620678
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 747 ESTs, 11 Proteins pseudo : _no_value

name	Havcr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171283 MGI:2159680
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Timd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:276891 MGI:2445125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sgcd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24052 MGI:1346525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clint1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865872 GeneID:216705 MGI:2144243
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clathrin interactor 1 transcript_id : NM_001045520.1

name	Lsm11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115311556 GeneID:72290 MGI:1919540
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : U7 snRNP-specific Sm-like protein LSM11 transcript_id : NM_028185.2

name	Thg1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124377987 GeneID:66628 MGI:1913878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) transcript_id : NM_001080969.1

name	Sox30 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27734193 GeneID:214105 MGI:1341157
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SRY-box containing gene 30 transcript_id : NM_173384.1

name	LOC100039624 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261863 GeneID:100039624
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 133 ESTs, 1 Protein product : hypothetical protein LOC100039624 transcript_id : XM_001473615.1

name	Adam19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117940059 GeneID:11492 MGI:105377
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 19 (meltrin beta) transcript_id : NM_009616.3

name	9530066K23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802885 GeneID:214112 MGI:2444671
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9530066K23 gene transcript_id : NM_172524.2

name	Cyfip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84370255 GeneID:76884 MGI:1924134
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytoplasmic FMR1 interacting protein 2 transcript_id : NM_133769.2

name	C030019I05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802268 GeneID:320116 MGI:2443410
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030019I05 gene transcript_id : NM_177075.3

name	LOC100038833 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261846 GeneID:100038833
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038833 transcript_id : XM_001471943.1

name	Itk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119703750 GeneID:16428 MGI:96621
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : IL2-inducible T-cell kinase transcript_id : NM_010583.2

name	OTTMUSG00000005491 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62000655 GeneID:432552 MGI:3650836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000005491 transcript_id : NM_001013783.1

name	Crsp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981285 GeneID:66213 MGI:1913463
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cofactor required for Sp1 transcriptional activation, subunit 9 transcript_id : NM_025426.2

name	Havcr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703359 GeneID:171285 MGI:2159682
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hepatitis A virus cellular receptor 2 transcript_id : NM_134250.1

name	LOC210535 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94390063 GeneID:210535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 1 Protein product : hepatitis A virus cellular receptor 1-like transcript_id : XM_109910.4

name	LOC675689 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261859 GeneID:675689
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to DPPA1 transcript_id : XM_001473179.1

name	BC053393 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802650 GeneID:407814 MGI:3039605
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC053393 transcript_id : NM_001025435.2

name	Dppa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342425 GeneID:347708 MGI:2157522
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : developmental pluripotency associated 1 transcript_id : NM_178247.2

name	EG237749 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261861 GeneID:237749 MGI:3646427
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : predicted gene, EG237749 transcript_id : XM_111219.7

name	Timd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386346 GeneID:171284 MGI:2159681
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-cell immunoglobulin and mucin domain containing 2 transcript_id : NM_134249.4

name	Havcr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527409 GeneID:171283 MGI:2159680
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hepatitis A virus cellular receptor 1 transcript_id : NM_134248.1

name	Timd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110624775 GeneID:276891 MGI:2445125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-cell immunoglobulin and mucin domain containing 4 transcript_id : NM_178759.4

name	Sgcd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377675 GeneID:24052 MGI:1346525
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sarcoglycan, delta (dystrophin-associated glycoprotein) transcript_id : NM_011891.3

name	Clint1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865873 GeneID:216705 MGI:2144243
definition	GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006897 - endocytosis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : enthoprotin; ENTH domain containing protein; epsin 4 product : clathrin interactor 1 protein_id : NP_001038985.1

name	Lsm11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789219 GeneID:72290 MGI:1919540
definition	GO_component : GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0016071 - mRNA metabolism [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 product : U7 snRNA-associated Sm-like protein Lsm11 protein_id : NP_082461.1

name	Thg1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124377988 GeneID:66628 MGI:1913878
definition	codon_start : 1 note : nterphase cyctoplasmic foci protein 45 product : interphase cyctoplasmic foci protein 45 protein_id : NP_001074438.1

name	Sox30 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734194 CCDS:CCDS24570.1 GeneID:214105 MGI:1341157
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : SRY-box containing gene 30 protein_id : NP_775560.1

name	LOC100039624 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261864 GeneID:100039624
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473665.1

name	Adam19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6752966 CCDS:CCDS24571.1 GeneID:11492 MGI:105377
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007507 - heart development [Evidence IMP]; GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0006509 - membrane protein ectodomain proteolysis [Evidence IMP]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : meltrin beta; a disintegrin and metalloproteinase domain 19 (meltrin beta) product : a disintegrin and metalloprotease domain 19 preproprotein protein_id : NP_033746.1

name	9530066K23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369726 CCDS:CCDS24572.1 GeneID:214112 MGI:2444671
definition	codon_start : 1 product : hypothetical protein LOC214112 protein_id : NP_766112.1

name	Cyfip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370256 CCDS:CCDS24573.1 GeneID:76884 MGI:1924134
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0019717 - synaptosome [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : cytoplasmic FMR1 interacting protein 2 protein_id : NP_598530.2

name	C030019I05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892985 CCDS:CCDS24574.1 GeneID:320116 MGI:2443410
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC320116 protein_id : NP_796049.1

name	LOC100038833 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261847 GeneID:100038833
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001471993.1

name	Itk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119703751 CCDS:CCDS24575.1 GeneID:16428 MGI:96621
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : interleukin-2-inducible T cell kinase product : IL2-inducible T-cell kinase protein_id : NP_034713.2

name	OTTMUSG00000005491 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62000656 CCDS:CCDS24576.1 GeneID:432552 MGI:3650836
definition	codon_start : 1 product : hypothetical protein LOC432552 protein_id : NP_001013805.1

name	Crsp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981286 GeneID:66213 MGI:1913463
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0003713 - transcription coactivator activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0045941 - positive regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : cofactor required for Sp1 transcriptional activation, subunit 9, 33kDa product : cofactor required for Sp1 transcriptional activation, subunit 9 protein_id : NP_079702.2

name	Havcr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703360 GeneID:171285 MGI:2159682
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : T-cell immunoglobulin and mucin domain containing 3 product : hepatitis A virus cellular receptor 2 protein_id : NP_599011.1

name	LOC210535 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:20347292 GeneID:210535
definition	codon_start : 1 product : hypothetical protein LOC210535 protein_id : XP_109910.1

name	LOC675689 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261860 GeneID:675689
definition	codon_start : 1 product : similar to DPPA1 protein_id : XP_001473229.1

name	BC053393 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70887609 CCDS:CCDS24580.1 GeneID:407814 MGI:3039605
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC407814 protein_id : NP_001020606.1

name	Dppa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30142691 CCDS:CCDS24581.1 GeneID:347708 MGI:2157522
definition	codon_start : 1 product : developmental pluripotency associated 1 protein_id : NP_839978.1

name	EG237749 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261862 GeneID:237749 MGI:3646427
definition	codon_start : 1 product : similar to TIM1 protein_id : XP_111219.7

name	Timd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328516 CCDS:CCDS24582.1 GeneID:171284 MGI:2159681
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : T-cell immunoglobulin and mucin domain containing 2 protein_id : NP_599010.3

name	Havcr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527410 CCDS:CCDS24583.1 GeneID:171283 MGI:2159680
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : T-cell immunoglobulin and mucin domain containing 1 product : hepatitis A virus cellular receptor 1 protein_id : NP_599009.1

name	Timd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110624776 GeneID:276891 MGI:2445125
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : smuckler product : T-cell immunoglobulin and mucin domain containing 4 protein_id : NP_848874.3

name	Sgcd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755484 CCDS:CCDS24584.1 GeneID:24052 MGI:1346525
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0016012 - sarcoglycan complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]; GO:0016044 - membrane organization and biogenesis [Evidence TAS] codon_start : 1 note : sarcoglycan, delta (35kD dystrophin-associated glycoprotein); sarcoglycan delta (dystrophin-associated glycoprotein) product : sarcoglycan, delta (dystrophin-associated glycoprotein) protein_id : NP_036021.1

name	LOC667037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667037
definition	number : 1 pseudo : _no_value

name	LOC100039577 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039577
definition	number : 2 pseudo : _no_value

name	LOC100039577 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039577
definition	number : 1 pseudo : _no_value

name	LOC435256 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435256
definition	number : 1 pseudo : _no_value

name	LOC633082 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261858 GeneID:633082
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1381 ESTs, 12 Proteins product : similar to ferritin light chain 2 pseudo : _no_value transcript_id : XR_031255.1

name	LOC100039730 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261866 GeneID:100039730
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 3 Proteins product : hypothetical protein LOC100039730 pseudo : _no_value transcript_id : XR_031448.1

name	LOC620678 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261868 GeneID:620678
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 747 ESTs, 11 Proteins product : similar to 60S ribosomal protein L7 pseudo : _no_value transcript_id : XR_031536.1

clone name	MSMg01-193A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065H10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-499B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216F10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-063F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380B17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-290L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270O02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-377H05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-118B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303L20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-271K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134D16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-338D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483B11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-193P04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-333M07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-096K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065C18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-063K05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-211H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255M10
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-179G18.b	B6Ng01-179G18.g
ACC	GA006145	GA006146
length	820	1,156
definition	B6Ng01-179G18.b	B6Ng01-179G18.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattcatattaattagtaatggccttaagggaaatactgaaagtttaat gcatcaaagctgactccgtagaaccaccgtctaagggtgatgtaagcact gtgtggatgtgagtggctgtcttgagtatttaaacgatgacaccgaggtc caaccccagtcccccacccaactcaccctgcagcaactggacaaggcccc agagccgtttgaatttgctagatccccagaccagtcgccaccaggaaccc tttaccctctccacctggtgcagaaacatattactgcatctctcagctcc cttcagaaaggtggttgtttgcagtaaatgatgattaacacgcaaactca taactggccgaagtacaaagagtaggagactgctgatgctcagccccaaa tgggatgtctgtatcacattacctcctccagagacgcagggatcgttgtg gaagaggtgatgggaggactttaagagccagatggtggcaggtgactaaa acacaacagtgccctctggacacgcatgaattcacagcacttatgactac atgcacaagccccatgcaagcccaggccagaccaaagcctgacgtgtacc agggaagcagacataaagtctcaccccaagcagaggagctattggcagtt aataaaacactccaggcgagggagagttttaaacactttgaaagtcttgt cccatgctccagggggaaggtcatatgcatccaagattgcataggtatca caaatcgatcttgatcagtgaaaaccaaaaagggcaggagggaaaggggt ggattgggaggagtggggga	gaattctttttaaaacattttaaaatctaagcttttttcttgatctttaa atacattaaaaaaaaaatcaaaggggtggggggcaaggaccactagagag gaaagagcattgaagttgtccagagtttgcaggcaagtgctgcaaaaatg gaatctctgtcctcaaagcgaggacctcaatttattgggatcaaatatct tgagcagaatgtgactcttcccagagggtcaactgccggggtcaggagtg cagggtagaagggatgagctgccaggaaggcggccttatgaacagcccaa atctctacagagcagtgaggggacactaagcggggaaagtctgtttatca cattctatccccagccagagctgacgatctggaaagtggaatctgcctct gggatacagctatggtcattgaaaaataatcagactaagaattaacagtg ccagacaggaggactggacagtttctgtttcaaaccacaaccctacacta caaatgctcctactcttgctcagagagacccagagttagtagagttgtcc aatctacagcaaggtctgagtatgtggtgtgcagtgatatatctgagaag aggcaggtctttctggctctattcccagagattcaaagttagtgtccaga aaggaacactctggtgtgccatccttaaggattctaatttatatgaccac cctggggtacatggccctgtctggcaaagtacagattatgcacatctctt ctcttctctgtgtggttaaaaaaacggtgatgggataacaatcacctttc ctggggcaggggatggttactcctgtcttctgttcctccccaggctgggt agaggaatatctattattcctgtgtcttggggagctcaagggctatgtcc tctctgcaaggtcagttgactagcttctatatggagacttgggcaatcct ctttaaaaagatgtgcttattttgtggggactgtgcagggtgtgttttta gtctgaaacatagagtttatacatccccatgactgagcttggagcaatgg aggagaccaggacatggaggagccaaagaacattcccagtatctttttag taagccgaacttgagaacatttccaggttagactctaagaagacctcctt tgaggg
quality values	Open. Hide. 38 38 16 25 49 29 35 54 52 45 36 52 52 54 45 28 23 47 62 62 47 62 47 54 62 62 62 62 62 62 62 62 14 18 11 7 8 10 10 20 19 21 21 21 15 15 14 13 23 59 59 59 56 62 59 56 56 56 59 62 62 62 59 59 62 59 59 56 46 56 39 59 62 59 62 46 62 62 54 17 30 23 23 25 18 32 28 34 48 33 29 48 38 43 62 62 62 62 59 62 62 59 59 59 59 62 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 54 62 62 62 59 62 62 62 62 59 59 59 62 59 62 62 62 62 62 62 62 62 59 54 59 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 59 54 59 59 49 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 56 54 59 59 62 56 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 56 62 59 62 59 59 59 62 56 59 62 59 62 59 59 59 62 54 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 49 54 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 59 62 62 62 62 62 62 62 50 62 62 62 54 62 59 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 51 51 51 59 59 59 59 56 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 51 59 56 56 56 56 56 45 62 62 62 62 62 62 56 56 56 56 51 62 44 49 62 56 62 56 56 62 62 47 62 62 62 56 56 56 50 56 46 46 56 51 62 56 51 56 56 54 56 62 62 62 62 56 62 37 56 62 62 56 56 56 56 62 56 56 62 62 56 62 39 62 62 50 62 56 47 56 56 62 56 62 62 56 62 56 56 38 47 47 38 46 42 52 48 52 42 52 62 52 62 62 62 62 54 62 62 47 39 54 62 62 62 62 62 62 62 45 45 54 54 52 52 58 54 54 54 54 58 58 48 49 54 54 52 52 42 52 42 44 54 49 50 58 52 58 54 54 42 46 46 37 43 42 41 47 42 40 50 52 48 40 39 41 39 52 48 49 58 35 52 37 34 52 34 47 54 52 58 29 42 46 58 53 49 34 40 34 34 16 30 39 54 51 42 48 43 46 45 27 42 47 32 58 58 50 49 51 53 49 46 40 47 42 40 36 42 42 33 41 31 51 13 31 49 18 50 39 31 58 54 54 28 42 37 46 32 52 37 43 47 46 46 30 30 37 36 35 39 33 52 33 24 46 40 34 54 31 54 50 50 30 58 28 39 58 58 39 17 58 16 36 39 45 39 58 58 54 31 50 24 34 37 39 41 33 39 41 47 49 37 26 49 50 41 41 35 50 29 24 49 54 54 26 35 15 9 26 13 34 40 39 32 39 30 42 31 53 40 53 14 29 37 32 17 28 37 35 27 37 31 18 27 29 30 45 32 40 33 19 33 40 34 31 30 32 42 41 36 18 28 25 40 23 20 30 26 42 12 40 41 31 32 28 28 25 26 25 16 9 31 20 25 27 14 23 32 13 40 36 53 51 33 25 46 41 32 31 21 40 32 33 40 18 40 31 33 25 31 27 14 15 15 13 18 32 21 6	Open. Hide. 56 47 56 51 62 62 62 62 62 56 44 16 16 11 10 16 6 18 25 32 21 28 28 28 28 28 34 39 56 43 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 54 62 62 62 46 40 34 28 28 27 28 27 32 46 40 32 32 34 43 62 59 62 50 62 62 62 62 62 62 59 59 62 62 62 59 59 62 59 59 59 62 56 62 56 62 62 62 62 62 62 54 62 56 59 59 62 59 59 54 56 56 59 62 62 62 62 62 59 56 42 54 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 56 59 59 59 59 59 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 56 50 62 62 62 62 59 62 59 59 62 62 62 62 62 62 62 59 59 62 50 54 54 51 56 59 50 51 49 35 38 19 12 40 59 62 62 62 62 62 62 62 62 62 62 62 59 59 54 62 49 62 56 62 62 59 62 62 59 59 62 62 59 62 62 62 62 62 56 59 59 54 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 59 51 59 62 46 62 62 62 62 59 62 59 59 59 56 46 45 62 62 62 62 49 38 49 62 62 62 62 62 62 62 62 59 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 53 56 56 56 56 56 62 56 62 62 46 47 44 62 62 62 62 62 62 62 62 62 62 62 62 53 51 42 56 50 41 50 50 50 51 51 62 62 62 56 56 62 62 47 47 62 56 62 62 47 47 56 62 62 56 56 62 62 62 62 56 54 54 62 56 56 62 62 56 62 47 38 62 62 56 47 56 56 56 62 62 62 62 62 62 46 62 62 62 39 62 62 62 62 48 54 52 52 54 62 52 62 62 62 62 62 62 54 54 52 52 62 62 62 62 62 62 62 62 54 58 58 58 58 58 58 52 54 49 41 41 58 42 58 53 41 34 58 54 37 52 58 54 58 58 54 52 54 58 46 58 52 41 42 58 54 54 54 30 58 58 58 58 52 54 54 52 52 52 52 41 58 34 51 58 54 58 38 45 52 35 42 41 58 38 42 58 54 58 48 41 34 19 45 52 46 46 53 53 54 51 42 49 58 32 58 51 25 49 30 38 25 38 42 47 35 27 7 58 46 50 52 58 58 46 58 58 53 33 41 42 48 47 46 40 50 58 26 42 40 47 36 31 49 54 50 46 50 51 41 46 53 50 50 42 48 37 53 32 15 40 43 42 31 52 33 50 51 39 29 39 58 31 52 31 42 25 41 31 53 53 53 18 44 24 44 31 50 42 29 35 41 39 32 40 29 58 58 34 39 39 37 51 40 37 53 34 39 58 58 39 47 44 43 44 50 31 41 32 50 52 46 33 51 37 41 45 42 38 35 33 35 34 41 50 51 39 30 33 53 41 19 39 29 53 30 28 40 37 34 37 26 45 49 31 38 23 54 37 39 29 16 32 41 33 45 42 52 32 52 25 51 44 40 13 17 52 45 47 40 47 30 28 51 49 30 40 44 9 11 26 19 42 28 28 33 35 29 25 38 39 26 54 14 7 47 20 9 24 31 31 46 46 47 28 15 7 46 40 41 17 20 31 46 32 33 37 39 45 31 31 31 30 21 22 8 31 29 18 18 6 6 23 18 29 22 40 37 32 18 9 32 9 21 18 23 16 5 16 22 33 9 30 10 13 25 17 26 39 31 31 35 34 16 9 20 36 22 22 41 30 31 28 36 28 31 29 42 31 18 32 28 30 30 21 11 10 25 46 7 9 40 21 25 29 24 32 33 33 43 20 33 31 22 21 18 10 32 32 30 32 13 6 5 5 6 24 19 19 31 20 24 23 9 9 9 8 25 20 31 29 39 24 16 13 11 12 28 17 28 31 32 14 20 21 16 23 21 15 28 44 19 11 35 41 43 22 17 31 19 31 23 25 15 22 9 9 14 44 36 8 21 9 23 41 41 29 20 22 28 15 14 21 31 19 6 44 36 5 5 7 30 12 42 48 48 21 25 22 32 33 9 8 18 34 24 13 14 8 12 8 29 6 17 34 10 24 4 12 31 10 30 12 43 26 43 8 6 9 7 22 17 22 11 6 29 22 31 14 18 14 16 11 11 5 3 13 4 3 4 5 9 4 4 8 15 13 14 8 3 4 7 30 7 17 10 6 6 19 10 8 6 21 30 21 9 14 11 16 11 26 27 8 28 9 13 11 5 18 16 8 5 8 34 38 28 9 21 7 4 6 4 10 12 6 5 4 3 6 18 7 2 1 7 7 9 4 11 12 15 10 15 6 8 6 24 11 7 9 4 16 5 17 5 20 9 12 6 8 5 6 7 4 6 2 2 3 16 14 5 11 3 13 3

Alignment Information

BAC End 1

BAC End 2

seq1: chr11_46007604_46008739
seq2: B6Ng01-179G18.g_70_1225

seq1  GAATTCTTTTTAAAACATTTTAAAATCTAAGCTTTTTTCTTGATCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAAAACATTTTAAAATCTAAGCTTTTTTCTTGATCTTTAA  50

seq1  ATACATTAAAAAAAAAATCAAAGGGGTGGGGGGCAAGGACCACTAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAAAAAAAAAATCAAAGGGGTGGGGGGCAAGGACCACTAGAGAG  100

seq1  GAAAGAGCATTGAAGTTGTCCAGAGTTTGCAGGCAAGTGCTGCAAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCATTGAAGTTGTCCAGAGTTTGCAGGCAAGTGCTGCAAAAATG  150

seq1  GAATCTCTGTCCTCAAAGCGAGGACCTCAATTTATTGGGATCAAATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTGTCCTCAAAGCGAGGACCTCAATTTATTGGGATCAAATATCT  200

seq1  TGAGCAGAATGTGACTCTTCCCAGAGGGTCAACTGTTGGGGTCAGGAGTG  250
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TGAGCAGAATGTGACTCTTCCCAGAGGGTCAACTGCCGGGGTCAGGAGTG  250

seq1  CAGGGTAGAAGGGATGAGCTGCCAGGAAGGCGGCCTTATGAACAGCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGAAGGGATGAGCTGCCAGGAAGGCGGCCTTATGAACAGCCCAA  300

seq1  ATCTCTACAGAGCAGTGAGGGGACACTAAGCGGGGAAAGTCTGTTTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTACAGAGCAGTGAGGGGACACTAAGCGGGGAAAGTCTGTTTATCA  350

seq1  CATTCTATCCCCAGCCAGAGCTGACGATCTGGAAAGTGGAATCTGCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATCCCCAGCCAGAGCTGACGATCTGGAAAGTGGAATCTGCCTCT  400

seq1  GGGATACAGCTATGGTCATTGAAAAATAATCAGACTAAGAATTAACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACAGCTATGGTCATTGAAAAATAATCAGACTAAGAATTAACAGTG  450

seq1  CCAGACAGGAGGACTGGACAGTTTCTGTTTCAAACCACAACCCTACACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGGAGGACTGGACAGTTTCTGTTTCAAACCACAACCCTACACTA  500

seq1  CAAATGCTCCTACTCTTGCTCAGAGAGACCCAGAGTTAGTAGAGTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTCCTACTCTTGCTCAGAGAGACCCAGAGTTAGTAGAGTTGTCC  550

seq1  AATCTACAGCAAGGTCTGAGTATGTGGTGTGCAGTGATATATCTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAGCAAGGTCTGAGTATGTGGTGTGCAGTGATATATCTGAGAAG  600

seq1  AGGCAGGTC-TTCTGGCTCTATTCCCAGAGATTCAAAGTTAGTGTCCAGA  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTCTTTCTGGCTCTATTCCCAGAGATTCAAAGTTAGTGTCCAGA  650

seq1  AAGGAACACTCTGGTGTGCCATCCTTAAGGATTCTAATTTATATGACCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACACTCTGGTGTGCCATCCTTAAGGATTCTAATTTATATGACCAC  700

seq1  CCTGGGGTACATGGCCCTGTCTGGCAAAGTACAGATTATGCACATCTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTACATGGCCCTGTCTGGCAAAGTACAGATTATGCACATCTCTT  750

seq1  CTCTTCTCTGTGTGGTTAAAAAAACGGTGAT-GGATAACAATCACC-TTC  797
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  CTCTTCTCTGTGTGGTTAAAAAAACGGTGATGGGATAACAATCACCTTTC  800

seq1  CTGGGGCAGGGGATGGTTACTCCTGTCTTCTG-TCCTCCCCAGGCT-GGT  845
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CTGGGGCAGGGGATGGTTACTCCTGTCTTCTGTTCCTCCCCAGGCTGGGT  850

seq1  AGAGGAATATCTATTATTCCTGTGTCTT-GGGAGCTC-AGGGCTATGTCC  893
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  AGAGGAATATCTATTATTCCTGTGTCTTGGGGAGCTCAAGGGCTATGTCC  900

seq1  TCTCTGC-AGGTCAGATGACTAGC-TCTATATGGAGACTTGGGCAAT-CT  940
      ||||||| ||||||| |||||||| |||||||||||||||||||||| ||
seq2  TCTCTGCAAGGTCAGTTGACTAGCTTCTATATGGAGACTTGGGCAATCCT  950

seq1  CTTT-AAAAGATGTGCT--ATTTGTGGGGACTGTGCAGGG-GTG-TTTTA  985
      |||| ||||||||||||   |||||||||||||||||||| ||| |||||
seq2  CTTTAAAAAGATGTGCTTATTTTGTGGGGACTGTGCAGGGTGTGTTTTTA  1000

seq1  GTCTGAAACATAGAAGTTAATACATCCCCATGACTGAGCTT-GAGCAAAA  1034
      ||||||||||||| |||| |||||||||||||||||||||| |||| || 
seq2  GTCTGAAACATAG-AGTTTATACATCCCCATGACTGAGCTTGGAGC-AAT  1048

seq1  GGGAGAGACCAGGACATTGA-GAGCAAAAGAACATTCCAAGAATC-TTTT  1082
      ||  ||||||||||||| || |||| |||||||||||| || ||| ||||
seq2  GGAGGAGACCAGGACATGGAGGAGCCAAAGAACATTCCCAGTATCTTTTT  1098

seq1  AGT-AGCCG-ACATGAGAACA-TTCCA-GTTAG-CTCAAAGAAGACTTCC  1127
      ||| ||||| || |||||||| ||||| ||||| ||| |||||||| |||
seq2  AGTAAGCCGAACTTGAGAACATTTCCAGGTTAGACTCTAAGAAGACCTCC  1148

seq1  TTTTGAGGG  1136
       ||||||||
seq2  -TTTGAGGG  1156

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information