BAC Information

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BAC

Clone NameB6Ng01-180B01
Chromosome11 (Build37)
Map Location 103,587,266 - 103,588,414
singlet/doubletsinglet
Overlap genenone
Upstream geneAdam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2
Downstream geneWnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180B01.bB6Ng01-180B01.g
ACCGA006604GA006605
length1,0171,143
definitionB6Ng01-180B01.b B6Ng01-180B01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcagagaaccacctggaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccaccatacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagctggtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatcccacaatacctctcctgggc
atatatccagaagatgtttcaactggtgagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcagcagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttataaaattcctaagcaa
atggatagacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactctcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaacatacaagatacaatttgctaaacgcatgaaactcaa
gaagaatgaagactacagtgtggacacattgccccttcttagaattggga
acaaaacacccatggaaagagttatatagacaaagtttggagctaagaca
aaaggatggaccatctagagactgccatacccggggatccatcccataat
cagcctccaaacgctgacaccattgcaaacactagcaagattttgctgaa
aggacccagatatagctgtctcttgtgaggctatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggatcacagggccccc
aatggaggagctagagaaagtacccaaggagctaaaggggtctgcaaccc
tataggtggaacacaat
gaattcccagtgtgtaccattactacaccgtggtttcaggggattgaact
caggtcctgtatgtgcacgataactactttcctgacggggccatctccca
gtcttatttgtcctctcttgccttggcttgtggcaatatttttgcccagt
agaggctgccacctgacccggctaaggagtaaaggtcgtgaggtgggaag
gctcctcagggccaccagcaggcagcagagccagactgaaaacaggggtc
cttccctcctctcatctccacatctcctcttgggtaagtagggcaggaat
gcaccccttgctatgaattctgggtaaatgaggcctagtgtaaagtggtt
atccaacccaggctgtccatcaaatcagaccaggccaaacatatgagcag
aggcccccactctgcggcctgccacatggggagaatgcaagtagtcgaaa
acaaagcggtagccttcaggaatctgggacctgaaatgaaaaacaaaaag
aacagagatgcaataatggatggggccccttatggtttagctccagagtc
ccattgcatcctgggggtctggaacaagggaggtagaagcagggagtggg
ggcagagagttcttatctctgagctcagacacaccctgtgccctgtccca
ggtcttcaggccccctagggttctcagggagggaggcagtcctgagggta
gccatgtttctccctgtatccccatcctaacatgtttgaggccctgtgct
cttgggcatggactccagctggttctgagctagcgacagaaggctccaca
cacagtaagcaggctttagtttgtccagggctttatcatctgtttcgctt
gagccccacctggtacatggcttcatccctcttcacagccaggagaaatg
aggctggagtgggttaactgttccttctgccaagggactcaactttcatt
gtcttcttgccctttctgccccatgttgccttctgcctcctcacccgact
tgagactttcctgctccttacttcagagtccaaacccaggcctgggggct
ctccattttcagactttggatccaaaagccgccattcttctaccgaacct
aggaccaggctggtgactgactactgaaggaattcctacccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_103587266_103588414
seq2: B6Ng01-180B01.g_66_1208 (reverse)

seq1  CTGGGTAGGAATTCCTCTAGTGATTTCACTCAACAAGCCCTGGTCTCCTA  50
      ||||||||||||||||  |||    ||| ||| ||   |||||  |||||
seq2  CTGGGTAGGAATTCCTTCAGT--AGTCAGTCACCA--GCCTGG--TCCTA  44

seq1  -GTTCCGTAGAAAGAATGGCGGC-TTTGGATTCAAAGGTCTGAAAATGGA  98
       |||| |||| |||||||||||| ||||||| |||| |||||||||||||
seq2  GGTTCGGTAG-AAGAATGGCGGCTTTTGGATCCAAA-GTCTGAAAATGGA  92

seq1  GAGCCCCCAGGGCCTGGTTTGGACTCTGAAGT-AGGAGCAGGAAAGTCTC  147
      ||||||||||| |  ||||||||||||||||| |||||||||||||||||
seq2  GAGCCCCCAGGCCTGGGTTTGGACTCTGAAGTAAGGAGCAGGAAAGTCTC  142

seq1  AAGTCGGGTGAGGAGGCAGAAGGCAACATGGGGCAGAAAGGGCAAAGAAG  197
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGTCGGGTGAGGAGGCAGAAGGCAACATGGGGCAGAAAGGGC-AAGAAG  191

seq1  ACAATGAAAGTTGAGTCACCTTGGCAGAAGGAACAGTTAA-CCACTCCAG  246
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  ACAATGAAAGTTGAGTC-CCTTGGCAGAAGGAACAGTTAACCCACTCCAG  240

seq1  CCTCATTTCTCCTGGCTGTGAAGAGGGATGAAGCCATGTACCAGGTGGGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTCTCCTGGCTGTGAAGAGGGATGAAGCCATGTACCAGGTGGGG  290

seq1  CTCAAGCGAAACAGATGATAAAGCCCTGGACAAACTAAAGCCTGCTTACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCGAAACAGATGATAAAGCCCTGGACAAACTAAAGCCTGCTTACT  340

seq1  GTGTGTGGAGCCTTCTGTCGCTAGCTCAGAACCAGCTGGAGTCCATGCCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGAGCCTTCTGTCGCTAGCTCAGAACCAGCTGGAGTCCATGCCC  390

seq1  AAGAGCACAGGGCCTCAAACATGTTAGGATGGGGATACAGGGAGAAACAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACAGGGCCTCAAACATGTTAGGATGGGGATACAGGGAGAAACAT  440

seq1  GGCTACCCTCAGGACTGCCTCCCTCCCTGAGAACCCTAGGGGGCCTGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCCTCAGGACTGCCTCCCTCCCTGAGAACCCTAGGGGGCCTGAAG  490

seq1  ACCTGGGACAGGGCACAGGGTGTGTCTGAGCTCAGAGATAAGAACTCTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGACAGGGCACAGGGTGTGTCTGAGCTCAGAGATAAGAACTCTCT  540

seq1  GCCCCCACTCCCTGCTTCTACCTCCCTTGTTCCAGACCCCCAGGATGCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACTCCCTGCTTCTACCTCCCTTGTTCCAGACCCCCAGGATGCAA  590

seq1  TGGGACTCTGGAGCTAAACCATAAGGGGCCCCATCCATTATTGCATCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCTGGAGCTAAACCATAAGGGGCCCCATCCATTATTGCATCTCT  640

seq1  GTTCTTTTTGTTTTTCATTTCAGGTCCCAGATTCCTGAAGGCTACCGCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTTGTTTTTCATTTCAGGTCCCAGATTCCTGAAGGCTACCGCTT  690

seq1  TGTTTTCGACTACTTGCATTCTCCCCATGTGGCAGGCCGCAGAGTGGGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCGACTACTTGCATTCTCCCCATGTGGCAGGCCGCAGAGTGGGGG  740

seq1  CCTCTGCTCATATGTTTGGCCTGGTCTGATTTGATGGACAGCCTGGGTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTCATATGTTTGGCCTGGTCTGATTTGATGGACAGCCTGGGTTG  790

seq1  GATAACCACTTTACACTAGGCCTCATTTACCCAGAATTCATAGCAAGGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCACTTTACACTAGGCCTCATTTACCCAGAATTCATAGCAAGGGG  840

seq1  TGCATTCCTGCCCTACTTACCCAAGAGGAGATGTGGAGATGAGAGGAGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCTGCCCTACTTACCCAAGAGGAGATGTGGAGATGAGAGGAGGG  890

seq1  AAGGACCCCTGTTTTCAGTCTGGCTCTGCTGCCTGCTGGTGGCCCTGAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCCCTGTTTTCAGTCTGGCTCTGCTGCCTGCTGGTGGCCCTGAGG  940

seq1  AGCCTTCCCACCTCACGACCTTTACTCCTTAGCCGGGTCAGGTGGCAGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCCACCTCACGACCTTTACTCCTTAGCCGGGTCAGGTGGCAGCC  990

seq1  TCTACTGGGCAAAAATATTGCCACAAGCCAAGGCAAGAGAGGACAAATAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGGCAAAAATATTGCCACAAGCCAAGGCAAGAGAGGACAAATAA  1040

seq1  GACTGGGAGATGGCCCCGTCAGGAAAGTAGTTATCGTGCACATACAGGAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGAGATGGCCCCGTCAGGAAAGTAGTTATCGTGCACATACAGGAC  1090

seq1  CTGAGTTCAATCCCCTGAAACCACGGTGTAGTAATGGTACACACTGGGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAATCCCCTGAAACCACGGTGTAGTAATGGTACACACTGGGAA  1140

seq1  TTC  1149
      |||
seq2  TTC  1143