BAC Information

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BAC

Clone NameB6Ng01-181B19
Chromosome4 (Build37)11 (Build37)
Map Location 85,669,059 - 85,670,260103,704,385 - 103,704,501
singlet/doubletsingletsinglet
Overlap geneLOC668052
Upstream geneD530005L17Rik, LOC100040303, Sh3gl2, A930009N24
Downstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181B19.bB6Ng01-181B19.g
ACCGA007362GA007363
length1,185319
definitionB6Ng01-181B19.b B6Ng01-181B19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,669,059 - 85,670,260)(103,704,385 - 103,704,501)
sequence
gaattcactccagagaatacaaacaaagccacagcctcatgtgtgatgtc
gtacgatgaagaatgacatgaagcccctttaaaggcctcccgagtttggg
aaaggaatccactttttaaaatctataacaggagatgctaagaagacaaa
aactttgaatatgtgcgtccctggaggccacgaacagaatggcctcagcc
tatggcaggaagcagcattgaaaatacagtttctccatgtggctgagcac
aaagtttgagctgtgtcacctgaacaaagggggctttagttcaattttta
actaagttcttggagctgcatgagattgcaagtatgtaaaaggcgaaaag
atggtaatgttaataaatgttaaggtgagataaaacttggagtgttgcag
actcctgctttggtgtggctagaaatgctgacctgcatatccgtggtaac
tgtgagctgtggaagagcagctggctttcacggtggcctgatgaacaaat
acttgtcttcccttaacacctttaatagataccactcaaatatcatggta
cacgtgcatgtgtgtttgtgtacatacctggacatatgagtgccttcctc
aatcattttatatgttaatcccttgacacagggttgttcaatgaacctgg
agttaatcaatttggttaggacagctggtcagcatgttccaatgatctgt
ctgtctccacactgggattgcaggtgggggccaccatgcctactgtttta
catgtaacattttacatgggtgttaggcataaaactcagccctcaagcgt
accagcatttactggctgagctatatcctcactcccataaaatatcttct
gaagacctagctagagtcttattctgaagaactatgttaaaagtttactt
ttaaattttaaacaaaatgctcaaagtaatttaggatgcataatgaaaag
atgttctaatttcatgtaacaagccccaggcttctgtcttccatttctaa
agtgtaaggaaagtgtaaaggaagagaagaagagctgagagatagagact
gagctgaagagagagagagagaatagataagagcaagaacagtagtatgc
ctaccattttactccctgttcctataaaattttcccaggtataggccatc
aatggcaaggctctctcaagctcaatctatcatct

tctcatgtatgttcatcagggagattggtttagaattttctttttttggt
tgtgtctttatctggttttcagtttgtaaagagagtttggtatcattcct
tcctttattgtatagatggtgtgagaaacatcgggtttgcttctcttaga
gtctggtagaatttaaaagtgaattcatattgtcttgaaattcttgttgg
gcaggagctcttctttttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85669059_85670260
seq2: B6Ng01-181B19.b_46_1230

seq1  GAATTCACTCCAGAGAATACAAACAAAGCCACAGCCTCATGTGTGATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAGAGAATACAAACAAAGCCACAGCCTCATGTGTGATGTC  50

seq1  GTACGATGAAGAATGACATGAAGCCCCTTTAAAGGCCTCCCGAGTTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGATGAAGAATGACATGAAGCCCCTTTAAAGGCCTCCCGAGTTTGGG  100

seq1  AAAGGAATCCACTTTTTAAAATCTATAACAGGAGATGCTAAGAAGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCCACTTTTTAAAATCTATAACAGGAGATGCTAAGAAGACAAA  150

seq1  AACTTTGAATATGTGCGTCCCTGGAGGCCACGAACAGAATGGCCTCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAATATGTGCGTCCCTGGAGGCCACGAACAGAATGGCCTCAGCC  200

seq1  TATGGCAGGAAGCAGCATTGAAAATACAGTTTCTCCATGTGGCTGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAGGAAGCAGCATTGAAAATACAGTTTCTCCATGTGGCTGAGCAC  250

seq1  AAAGTTTGAGCTGTGTCACCTGAACAAAGGGGGCTTTAGTTCAATTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGAGCTGTGTCACCTGAACAAAGGGGGCTTTAGTTCAATTTTTA  300

seq1  ACTAAGTTCTTGGAGCTGCATGAGATTGCAAGTATGTAAAAGGCGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTCTTGGAGCTGCATGAGATTGCAAGTATGTAAAAGGCGAAAAG  350

seq1  ATGGTAATGTTAATAAATGTTAAGGTGAGATAAAACTTGGAGTGTTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAATGTTAATAAATGTTAAGGTGAGATAAAACTTGGAGTGTTGCAG  400

seq1  ACTCCTGCTTTGGTGTGGCTAGAAATGCTGACCTGCATATCCGTGGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCTTTGGTGTGGCTAGAAATGCTGACCTGCATATCCGTGGTAAC  450

seq1  TGTGAGCTGTGGAAGAGCAGCTGGCTTTCACGGTGGCCTGATGAACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGTGGAAGAGCAGCTGGCTTTCACGGTGGCCTGATGAACAAAT  500

seq1  ACTTGTCTTCCCTTAACACCTTTAATAGATACCACTCAAATATCATGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTTCCCTTAACACCTTTAATAGATACCACTCAAATATCATGGTA  550

seq1  CACGTGCATGTGTGTTTGTGTACATACCTGGACATATGAGTGCCTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCATGTGTGTTTGTGTACATACCTGGACATATGAGTGCCTTCCTC  600

seq1  AATCATTTTATATGTTAATCCCTTGACACAGGGTTGTTCAATGAACCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTATATGTTAATCCCTTGACACAGGGTTGTTCAATGAACCTGG  650

seq1  AGTTAATCAATTTGGTTAGGACAGCTGGTCAGCATGTTCCAATGATCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATCAATTTGGTTAGGACAGCTGGTCAGCATGTTCCAATGATCTGT  700

seq1  CTGTCTCCACACTGGGATTGCAGGTGGGGGCCACCATGCCTACTGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCACACTGGGATTGCAGGTGGGGGCCACCATGCCTACTGTTTTA  750

seq1  CATGTAACATTTTACATGGGTGTTAGGCATAAAACTCAGGCCCTCAAGCG  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATGTAACATTTTACATGGGTGTTAGGCATAAAACTCA-GCCCTCAAGCG  799

seq1  TACCAGCATTTACTGGCTGAGCTATATCCTCACTCCCATAAAATATCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCATTTACTGGCTGAGCTATATCCTCACTCCCATAAAATATCTTC  849

seq1  TGAAGACCTAGCTAGAGTCTTATTCTGAAGAACTATGTTAAAAGTTTAC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAAGACCTAGCTAGAGTCTTATTCTGAAGAACTATGTTAAAAGTTTACT  899

seq1  TTTAAATTTTAAACAAAATGCTCAAAGTAATTTAGGATGCATAATGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTAAACAAAATGCTCAAAGTAATTTAGGATGCATAATGAAAA  949

seq1  GATGTTCTAA-TTCATGTAACAAGCCCCAGGCTTCTGTCTTCCATTTCTA  998
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTAATTTCATGTAACAAGCCCCAGGCTTCTGTCTTCCATTTCTA  999

seq1  AAGTGTAAGGAAAGTGTAAAAGGGAGAGAGAGAGCTTGAGAGAATAAGAG  1048
      ||||||||||||||||||||  |||             |||||| |||||
seq2  AAGTGTAAGGAAAGTGTAAA--GGA-------------AGAGAAGAAGAG  1034

seq1  AAGTGAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  1098
        | |||  |||||  |||    ||||||||||||||| | ||| | |||
seq2  CTGAGAGATAGAGACTGAGCTGAAGAGAGAGAGAGAGA-ATAGATA-AGA  1082

seq1  GAGAGAGAGAGAGAGAAT-------ATATAACTCCCTGTT-CTATAAAAT  1140
      |  ||| | ||  || ||       || | |||||||||| |||||||||
seq2  GCAAGA-ACAG-TAGTATGCCTACCATTTTACTCCCTGTTCCTATAAAAT  1130

seq1  TTTTCCACAGTTTATTAAGGCCATCAGTATGGGCAGG-TCTCTCAAGCCA  1189
      ||| |||     |||  |||||||||  ||||  ||| ||||||||||  
seq2  TTTCCCA---GGTAT--AGGCCATCA--ATGGCAAGGCTCTCTCAAGCTC  1173

seq1  CATCTATACATCT  1202
       |||||| |||||
seq2  AATCTAT-CATCT  1185


seq1: chr11_103704385_103704501
seq2: B6Ng01-181B19.g_274_384 (reverse)

seq1  AGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  50

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAA  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  100

seq1  AGGAGGAAGGAAGAAGA  117
           |||  |||||||
seq2  -----GAA-AAAGAAGA  111


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