BAC Information

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BAC

Clone NameB6Ng01-182A17
Chromosome11 (Build37)
Map Location 77,576,481 - 77,706,235
singlet/doubletdoublet
Overlap geneMyo18a, Pipox
Upstream geneGosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506
Downstream geneSez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182A17.bB6Ng01-182A17.g
ACCGA008042GA008043
length1,120682
definitionB6Ng01-182A17.b B6Ng01-182A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,705,109 - 77,706,235)(77,576,481 - 77,577,164)
sequence
gaattcagtgggataatagaaggttattaacaaatggatgggtggctgcc
agggctatttacaaaaggaaaaatttagtcagtgctgaggtactattgct
aaccagaatgcctggccaatcagtgggcctcaaggagacctggaagtatg
gaaatatttgaaaatatctaggcctggcgatgagcacctgaaaatcccag
ttgctcaggagaccaatgtagggggattgcaagcttaaggcctgcctggg
ctacataacatgacagtgactcaaataagaaataaaaagaggtctagggc
aatagatagctcatctgcagggcacctacttgcctcctttgtgcaaggcc
agaggtctaggccccaggattagaaaggaaccatttgaagcctaagatgg
ctcctaaagaacaaagggaaggctgagccaaagggcagtgacttccattg
tctttcttgtctttcttgtcaagttctttcttccccattcccgaggaagc
tcacatggacagagccgcataatcagaaaggcttatccagaggacttcta
cacgatgatgatgaaggaatgttatcagacatgggcccagctggagcgtg
aagccggaacccagttacacaggtgggcgagggaggaagaccaggaacac
aggggacccatccctccaggtgctttgaatgtgtgatgctgtaaggtgtg
aacttgaaatgcaactggagggacacaagcccaggagggaggtgccagtc
atgtggaggccttctgctcactgtcacagatgctgctggcctctgtacct
ttgagttccaggcctggttagatcctgtgaccaaggctcttacaggttgt
tttctgaaaacttagaggatgaccatggacaggtatctagagcagcctgc
gcaaagccttccagagccatcttatagggcctgcgtcaaaatctatatat
ttttttgttttttgtttttgtttttgagatggtttctctgtgtagccccg
gctgtctggactcactctgtagaccaggctggactcgaactcagaatctg
ctgcctcttgcctcccaagtgctggattaaggcgtaagccacccaccgcc
cgcctaaaattctatattct
gaattccaaacatttagcgcgtccctctggtgtcttccctggtcagtgca
actcagcacattacagacatgccccgcagtctccagcggctagcgcggac
aaaatctccaggcatggcctctgggacatggccgcggggtccttggagtc
catcgcggacagtgtttgggcagcgctgggctccagcttggcccaaggct
ggcggcgcgccctggcatcagaccggccggcgtctatgccgccagccgcc
agcagggggcagccttcggttcgctcggctcgcgcgggcgcgggggggcg
gcgctgcgccgcgcggtgctgcgctccagccgggacccggccggggccgc
tggatgccgcgtctccgctcctgctgcctgccgggcgggctccggcggcc
ggtgagtgcggggcggccccgcggtggtgaaccgggcccgggagggtggc
gtggtgagttcgggccggccgacggggcccacgggctcctgctccttccc
tgtcccctggaaacggcggcccggactccaggctctgtccctggcggcgc
cgcggcgctggacagcccgggtgggggccgatccggagcggcgggcaggg
aaagcgcggggcccttgctggcagtctgggcgcctgcggcgggatagggt
ggccttcggctgggatggctaaaggttagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_77705109_77706235
seq2: B6Ng01-182A17.b_41_1160 (reverse)

seq1  AGAATATAG-ATTTTAGCCGGGCGGT-GGTGGCTAACGCCTTTAATCCCA  48
      ||||||||| ||||||| |||||||| ||||||| ||||| ||||| |||
seq2  AGAATATAGAATTTTAGGCGGGCGGTGGGTGGCTTACGCC-TTAAT-CCA  48

seq1  GCACTTGGGAGGC-AGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  97
      ||||||||||||| ||||||| ||||| ||||||||||||| ||||||||
seq2  GCACTTGGGAGGCAAGAGGCA-GCAGA-TTCTGAGTTCGAGTCCAGCCTG  96

seq1  GTCTACAGAGTGAGTTCCAGGACAGCCGGGGCTACACAGAGAAACCATCT  147
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTGAG-TCCA-GACAGCCGGGGCTACACAGAGAAACCATCT  144

seq1  CAAAAAACAAAAAACAAAAAACAAAAAAATTATATAGATTTTGACGCAGG  197
      ||||||   |||||||||||||||||||| ||||||||||||||||||||
seq2  CAAAAA--CAAAAACAAAAAACAAAAAAA-TATATAGATTTTGACGCAGG  191

seq1  CCCTATAAGATGGCTCTGGAAGGCTTTGCGCAGGCCTGCTCTAGATACCT  247
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCTATAAGATGGCTCTGGAAGGCTTTGCGCAGG-CTGCTCTAGATACCT  240

seq1  GTCCATGGTCATCCTCTAAGTTTTCAGAAAACAACCTGTAAGAGCCTTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGTCATCCTCTAAGTTTTCAGAAAACAACCTGTAAGAGCCTTGG  290

seq1  TCACAGGATCTAACCAGGCCTGGAACTCAAAGGTACAGAGGCCAGCAGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGATCTAACCAGGCCTGGAACTCAAAGGTACAGAGGCCAGCAGCA  340

seq1  TCTGTGACAGTGAGCAGAAGGCCTCCACATGACTGGCACCTCCCTCCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACAGTGAGCAGAAGGCCTCCACATGACTGGCACCTCCCTCCTGG  390

seq1  GCTTGTGTCCCTCCAGTTGCATTTCAAGTTCACACCTTACAGCATCACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTCCCTCCAGTTGCATTTCAAGTTCACACCTTACAGCATCACAC  440

seq1  ATTCAAAGCACCTGGAGGGATGGGTCCCCTGTGTTCCTGGTCTTCCTCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGCACCTGGAGGGATGGGTCCCCTGTGTTCCTGGTCTTCCTCCC  490

seq1  TCGCCCACCTGTGTAACTGGGTTCCGGCTTCACGCTCCAGCTGGGCCCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCACCTGTGTAACTGGGTTCCGGCTTCACGCTCCAGCTGGGCCCAT  540

seq1  GTCTGATAACATTCCTTCATCATCATCGTGTAGAAGTCCTCTGGATAAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATAACATTCCTTCATCATCATCGTGTAGAAGTCCTCTGGATAAGC  590

seq1  CTTTCTGATTATGCGGCTCTGTCCATGTGAGCTTCCTCGGGAATGGGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATTATGCGGCTCTGTCCATGTGAGCTTCCTCGGGAATGGGGAA  640

seq1  GAAAGAACTTGACAAGAAAGACAAGAAAGACAATGGAAGTCACTGCCCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACTTGACAAGAAAGACAAGAAAGACAATGGAAGTCACTGCCCTT  690

seq1  TGGCTCAGCCTTCCCTTTGTTCTTTAGGAGCCATCTTAGGCTTCAAATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCCTTCCCTTTGTTCTTTAGGAGCCATCTTAGGCTTCAAATGG  740

seq1  TTCCTTTCTAATCCTGGGGCCTAGACCTCTGGCCTTGCACAAAGGAGGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTAATCCTGGGGCCTAGACCTCTGGCCTTGCACAAAGGAGGCA  790

seq1  AGTAGGTGCCCTGCAGATGAGCTATCTATTGCCCTAGACCTCTTTTTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGCCCTGCAGATGAGCTATCTATTGCCCTAGACCTCTTTTTATT  840

seq1  TCTTATTTGAGTCACTGTCATGTTATGTAGCCCAGGCAGGCCTTAAGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTGAGTCACTGTCATGTTATGTAGCCCAGGCAGGCCTTAAGCTT  890

seq1  GCAATCCCCCTACATTGGTCTCCTGAGCAACTGGGATTTTCAGGTGCTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCCCTACATTGGTCTCCTGAGCAACTGGGATTTTCAGGTGCTCA  940

seq1  TCGCCAGGCCTAGATATTTTCAAATATTTCCATACTTCCAGGTCTCCTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCAGGCCTAGATATTTTCAAATATTTCCATACTTCCAGGTCTCCTTG  990

seq1  AGGCCCACTGATTGGCCAGGCATTCTGGTTAGCAATAGTACCTCAGCACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCACTGATTGGCCAGGCATTCTGGTTAGCAATAGTACCTCAGCACT  1040

seq1  GACTAAATTTTTCCTTTTGTAAATAGCCCTGGCAGCCACCCATCCATTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATTTTTCCTTTTGTAAATAGCCCTGGCAGCCACCCATCCATTTG  1090

seq1  TTAATAACCTTCTATTATCCCACTGAATTC  1127
      ||||||||||||||||||||||||||||||
seq2  TTAATAACCTTCTATTATCCCACTGAATTC  1120

seq1: chr11_77576481_77577164
seq2: B6Ng01-182A17.g_61_742

seq1  GAATTCCAAACATTTAGCGCGTCCCTCTGGTGTCTTCCCTGGTCAGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACATTTAGCGCGTCCCTCTGGTGTCTTCCCTGGTCAGTGCA  50

seq1  ACTCAGCACATTACAGACATGCCCCGCAGTCTCCAGCGGCTAGCGCGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCACATTACAGACATGCCCCGCAGTCTCCAGCGGCTAGCGCGGAC  100

seq1  AAAATCTCCAGGCATGGCCTCTGGGACATGGCCGCGGGGTCCTTGGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCCAGGCATGGCCTCTGGGACATGGCCGCGGGGTCCTTGGAGTC  150

seq1  CATCGCGGACAGTGTTTGGGCAGCGCTGGGCTCCAGCTTGGCCCAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCGGACAGTGTTTGGGCAGCGCTGGGCTCCAGCTTGGCCCAAGGCT  200

seq1  GGCGGCGCGCCCTGGCATCAGACCGGCCGGCGTCTATGCCGCCAGCCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCGCGCCCTGGCATCAGACCGGCCGGCGTCTATGCCGCCAGCCGCC  250

seq1  AGCAGGGGGCAGCCTTCGGTTCGCTCGGCTCGCGCGGGCGCGGGGGGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGGCAGCCTTCGGTTCGCTCGGCTCGCGCGGGCGCGGGGGGGCG  300

seq1  GCGCTGCGCCGCGCGGTGCTGCGCTCCAGCCGGGACCCGGCCGGGGCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGCGCCGCGCGGTGCTGCGCTCCAGCCGGGACCCGGCCGGGGCCGC  350

seq1  TGGATGCCGCGTCTCCGCTCCTGCTGCCTGCCGGGCGGGCTCCGGCGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCGCGTCTCCGCTCCTGCTGCCTGCCGGGCGGGCTCCGGCGGCC  400

seq1  GGTGAGTGCGGGGCGGCCCCGCGGTGGTGAACCGGGCCCGGGAGGGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGCGGGGCGGCCCCGCGGTGGTGAACCGGGCCCGGGAGGGTGGC  450

seq1  GTGGTGAGTTCGGGCCGGCCGACGGGGCCCACGGGCTCCTGCTCCTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGTTCGGGCCGGCCGACGGGGCCCACGGGCTCCTGCTCCTTCCC  500

seq1  TGTCCCCTGGAAACGGCGGCCCGGACTCCAGGCTCTGTCCCTGGCGGCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCTGGAAACGGCGGCCCGGACTCCAGGCTCTGTCCCTGGCGGCGC  550

seq1  CGCGGCGCTGGACAGCCCGGGTGGGGGCCGATCCGGAGCGGCGGGCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCGCTGGACAGCCCGGGTGGGGGCCGATCCGGAGCGGCGGGCAGGG  600

seq1  AAAGCGCGGGGCCCTTGCTGGCAGTCTGGGCGCCTGCGGCGGGATAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGCGGGGCCCTTGCTGGCAGTCTGGGCGCCTGCGGCGGGATAGGGT  650

seq1  GGCCTTCGGCTTGGGAGGGCTGAAGGTTTAGAGG  684
      |||||||||| ||||| |||| |||| |||||||
seq2  GGCCTTCGGC-TGGGATGGCTAAAGG-TTAGAGG  682