BAC Information

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BAC

Clone NameB6Ng01-182D24
Chromosome11 (Build37)
Map Location 100,237,564 - 100,358,545
singlet/doubletdoublet
Overlap geneJup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly
Upstream geneKrt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835
Downstream geneTtc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182D24.bB6Ng01-182D24.g
ACCGA008196GA008197
length1,146775
definitionB6Ng01-182D24.b B6Ng01-182D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,237,564 - 100,238,717)(100,357,771 - 100,358,545)
sequence
gaattccaggccaaaggatagctcccagactgcccttcccccaagtaggc
gagacccaagacgctcagtttatccaaccctcaagctggccaatttgaca
gtggaaaatggcctctcactgggagctaaatttcatttctgtaaattcct
gggccgagcattctgcttatgagccacctgggagccacttgttgactctg
tgagcaccacactgttaggacccagtgttaatgagctccggtgtgctgag
gcgctggctcctaggttccatgtttgtccctttcctgtttcttgaatctg
cagatgctcttcatgtctgcatgtggctgcacttcaagaaggctctcgtg
atctaagttcggaaagccacttatccacccttctctacacagacctagac
tactcctggcccacacattccaaacccctcagcagcacctggggacagat
ctgcccatctgtaccggactcacctggacaaacaggggaatggtgttgag
ccggaagatctccatgcggttcatgggatcccgggcgaggatgtgcaggg
ctccggtgcagccttccacgatctcctccatcctcacaccatccgtgtag
ggctgctgggtgcctgcagccacatggcgctgggcgtcctggtgggcctt
gaccaacagctggacgaggcggggaatgaccgcggcctcctgcagagggg
catggttggctgggcacagagccaggttccggatcaggccaatagttgcc
tggcaagaaaggaggcagtgatgagtggaggggcgggtagtccttaaaca
tctggaggatccctgatccccggctttaggtattttgtccttcctgtcat
ctcttctgaatctgagtcccacttcagcaacaaccgcagagtcaggagca
tccctggctactcctgggaacggaactggggggcttgtgggcggggctgt
aggcacagaactgaaaggaatctagagctagttgggctttagctcagtta
ggacacacaaaggttggatacccagcacgcacaggagtgggtgtgatggc
acgactaacccagcagtaagggagaggctgagcaggagatcagggcgacc
ttgcctacaatctgaggttagcttggaatcctgaactgtacttttt
gaattcagttttgttttcttttgagactggtctcgtcatctagcccaggc
tggcctgaaactctgaggtccacctgtctctgctctcagaacgctaggat
taaaggtgttcaccagctccagtttctacttgccaacaccaagcaactat
gtaatgaattagtgttctgtatactctgcatgtctttggacattaattaa
aactaactaacagaaacactggcttgccatttgtgccctggatcctattc
ctccttcccccttttctgttgcaatatttgccttttgttagtgatttgta
aaagcctgctatagaccagtggttttgtttgtttgtttgtttgtttttta
ttctctgatccagttattcagttaatgagtggagaatataacttgttttg
ctgtttagatgagctgctctttcaggctggagcagactttggcaaaaaca
tcccagggcaaaatggtagcccccacctgtttccacaaataaggtttttt
tttattaaaacagccagtgctttcatttatgttttgtgcatggatactta
cacactgaaaacctggtacacagaccacaagacccacaaaacctaaactg
tgatcttgggaccctttacagacgggtccagagccaaagagagatggttc
ttagatcttcagtccctctagcccagtctaggcaagtatgggaacagctt
gcttctgttgtgcactggctacagcctgcagggatggagataagactggc
tgggtacttgggggtggggggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100237564_100238717
seq2: B6Ng01-182D24.b_46_1191

seq1  GAATTCCAGGCCAAAGGATAGCTCCCAGACTGCCCTTCCCCCAAGTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAAAGGATAGCTCCCAGACTGCCCTTCCCCCAAGTAGGC  50

seq1  GAGACCCAAGACGCTCAGTTTATCCAACCCTCAAGCTGGCCAATTTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCAAGACGCTCAGTTTATCCAACCCTCAAGCTGGCCAATTTGACA  100

seq1  GTGGAAAATGGCCTCTCACTGGGAGCTAAATTTCATTTCTGTAAATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAATGGCCTCTCACTGGGAGCTAAATTTCATTTCTGTAAATTCCT  150

seq1  GGGCCGAGCATTCTGCTTATGAGCCACCTGGGAGCCACTTGTTGACTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGAGCATTCTGCTTATGAGCCACCTGGGAGCCACTTGTTGACTCTG  200

seq1  TGAGCACCACACTGTTAGGACCCAGTGTTAATGAGCTCCGGTGTGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCACACTGTTAGGACCCAGTGTTAATGAGCTCCGGTGTGCTGAG  250

seq1  GCGCTGGCTCCTAGGTTCCATGTTTGTCCCTTTCCTGTTTCTTGAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGCTCCTAGGTTCCATGTTTGTCCCTTTCCTGTTTCTTGAATCTG  300

seq1  CAGATGCTCTTCATGTCTGCATGTGGCTGCACTTCAAGAAGGCTCTCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTCTTCATGTCTGCATGTGGCTGCACTTCAAGAAGGCTCTCGTG  350

seq1  ATCTAAGTTCGGAAAGCCACTTATCCACCCTTCTCTACACAGACCTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTTCGGAAAGCCACTTATCCACCCTTCTCTACACAGACCTAGAC  400

seq1  TACTCCTGGCCCACACATTCCAAACCCCTCAGCAGCACCTGGGGACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGGCCCACACATTCCAAACCCCTCAGCAGCACCTGGGGACAGAT  450

seq1  CTGCCCATCTGTACCGGACTCACCTGGACAAACAGGGGAATGGTGTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATCTGTACCGGACTCACCTGGACAAACAGGGGAATGGTGTTGAG  500

seq1  CCGGAAGATCTCCATGCGGTTCATGGGATCCCGGGCGAGGATGTGCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGATCTCCATGCGGTTCATGGGATCCCGGGCGAGGATGTGCAGGG  550

seq1  CTCCGGTGCAGCCTTCCACGATCTCCTCCATCCTCACACCATCCGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGTGCAGCCTTCCACGATCTCCTCCATCCTCACACCATCCGTGTAG  600

seq1  GGCTGCTGGGTGCCTGCAGCCACATGGCGCTGGGCGTCCTGGTGGGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGGTGCCTGCAGCCACATGGCGCTGGGCGTCCTGGTGGGCCTT  650

seq1  GACCAACAGCTGGACGAGGCGGGGAATGACCGCGGCCTCCTGCAGAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACAGCTGGACGAGGCGGGGAATGACCGCGGCCTCCTGCAGAGGGG  700

seq1  CATGGTTGGCTGGGCACAGAGCCAGGTTCCGGATCAGGCCAATAGTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGGCTGGGCACAGAGCCAGGTTCCGGATCAGGCCAATAGTTGCC  750

seq1  TGGCAAGAAAGGAGGCAGTGATGAGTGGAGGGGCGGGTAGTCCTTAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAAAGGAGGCAGTGATGAGTGGAGGGGCGGGTAGTCCTTAAACA  800

seq1  TCTGGAGGATCCCTGATCCCCGGCTTTAGGTATTTTGTCCTTCCTGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGATCCCTGATCCCCGGCTTTAGGTATTTTGTCCTTCCTGTCAT  850

seq1  CTCTTCTGAATCTGAGTCCCACTTCAGCAACAACCGCAGAGTCAGGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGAATCTGAGTCCCACTTCAGCAACAACCGCAGAGTCAGGAGCA  900

seq1  T-CCTGGCTACTCCT-GGAACGGAACT-GGGGGCTTGTGGGCGGGGCTGT  947
      | ||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TCCCTGGCTACTCCTGGGAACGGAACTGGGGGGCTTGTGGGCGGGGCTGT  950

seq1  AGGCACAGAACTG-AAGGAATCTAGAGCTAAGGTTGGGGCTTTAGCTCAG  996
      ||||||||||||| ||||||||||||||||  ||| ||||||||||||||
seq2  AGGCACAGAACTGAAAGGAATCTAGAGCTA--GTT-GGGCTTTAGCTCAG  997

seq1  TTAGGACACACAAAGGGTTGGATACCCAGCACCGCACA-GAGTGGGTGTG  1045
      |||||||||||||| |||||||||||||||| |||||| |||||||||||
seq2  TTAGGACACACAAA-GGTTGGATACCCAGCA-CGCACAGGAGTGGGTGTG  1045

seq1  ATGGCACAGAACTTACCCCAGCAAGTAGGGAGAGGCTGAGGCAGGAGGAT  1095
      ||||||| ||   || |||||||   ||||||||||||| |||||| |||
seq2  ATGGCAC-GA--CTAACCCAGCAGTAAGGGAGAGGCTGA-GCAGGA-GAT  1090

seq1  CAAGGCGAACCTTGGCTACAATCTGAGGTTAGCTTGGGATACCTGAGACT  1145
      || |||| |||||| |||||||||||||||||||||| || ||||| |||
seq2  CAGGGCG-ACCTTGCCTACAATCTGAGGTTAGCTTGGAAT-CCTGA-ACT  1137

seq1  GTACTTTTT  1154
      |||||||||
seq2  GTACTTTTT  1146

seq1: chr11_100357771_100358545
seq2: B6Ng01-182D24.g_64_838 (reverse)

seq1  CCTTCCCCCCACCCCCAAGTACCCAGCCAGTCTTATCTCCATCCCTGCAG  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCCCACCCCCAAGTACCCAGCCAGTCTTATCTCCATCCCTGCAG  50

seq1  GCTGTAGCCAGTGCACAACAGAAGCAAGCTGTTCCCATACTTGCCTAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCCAGTGCACAACAGAAGCAAGCTGTTCCCATACTTGCCTAGAC  100

seq1  TGGGCTAGAGGGACTGAAGATCTAAGAACCATCTCTCTTTGGCTCTGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAGAGGGACTGAAGATCTAAGAACCATCTCTCTTTGGCTCTGGAC  150

seq1  CCGTCTGTAAAGGGTCCCAAGATCACAGTTTAGGTTTTGTGGGTCTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTGTAAAGGGTCCCAAGATCACAGTTTAGGTTTTGTGGGTCTTGTG  200

seq1  GTCTGTGTACCAGGTTTTCAGTGTGTAAGTATCCATGCACAAAACATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTACCAGGTTTTCAGTGTGTAAGTATCCATGCACAAAACATAAA  250

seq1  TGAAAGCACTGGCTGTTTTAATAAAAAAAAACCTTATTTGTGGAAACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCACTGGCTGTTTTAATAAAAAAAAACCTTATTTGTGGAAACAGG  300

seq1  TGGGGGCTACCATTTTGCCCTGGGATGTTTTTGCCAAAGTCTGCTCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTACCATTTTGCCCTGGGATGTTTTTGCCAAAGTCTGCTCCAGC  350

seq1  CTGAAAGAGCAGCTCATCTAAACAGCAAAACAAGTTATATTCTCCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAGCAGCTCATCTAAACAGCAAAACAAGTTATATTCTCCACTCA  400

seq1  TTAACTGAATAACTGGATCAGAGAATAAAAAACAAACAAACAAACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAATAACTGGATCAGAGAATAAAAAACAAACAAACAAACAAACA  450

seq1  AAACCACTGGTCTATAGCAGGCTTTTACAAATCACTAACAAAAGGCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTGGTCTATAGCAGGCTTTTACAAATCACTAACAAAAGGCAAAT  500

seq1  ATTGCAACAGAAAAGGGGGAAGGAGGAATAGGATCCAGGGCACAAATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAACAGAAAAGGGGGAAGGAGGAATAGGATCCAGGGCACAAATGGC  550

seq1  AAGCCAGTGTTTCTGTTAGTTAGTTTTAATTAATGTCCAAAGACATGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTGTTTCTGTTAGTTAGTTTTAATTAATGTCCAAAGACATGCAG  600

seq1  AGTATACAGAACACTAATTCATTACATAGTTGCTTGGTGTTGGCAAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACAGAACACTAATTCATTACATAGTTGCTTGGTGTTGGCAAGTAG  650

seq1  AAACTGGAGCTGGTGAACACCTTTAATCCTAGCGTTCTGAGAGCAGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAGCTGGTGAACACCTTTAATCCTAGCGTTCTGAGAGCAGAGAC  700

seq1  AGGTGGACCTCAGAGTTTCAGGCCAGCCTGGGCTAGATGACGAGACCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGACCTCAGAGTTTCAGGCCAGCCTGGGCTAGATGACGAGACCAGT  750

seq1  CTCAAAAGAAAACAAAACTGAATTC  775
      |||||||||||||||||||||||||
seq2  CTCAAAAGAAAACAAAACTGAATTC  775